Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03584
- Subject:
- NR_130759.2
- Aligned Length:
- 5547
- Identities:
- 530
- Gaps:
- 5017
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTGCCTGAGTTCGCCAGTGGTCCAGGAGCCGCTTTTTTCCACTCGGGAAGACTTCAGAGAAGTCTCACAAAGG 74
Query 1 --------------------------------------ATGCTCGTTCTCAGAAGCGGCCTGACCAAGGCGCTT 36
||||||||||||||||||||||||||||||||||||
Sbjct 75 ACTCGGCTGGCTGCTTTTCTCAGTGCCGAAGCCGCGCCATGCTCGTTCTCAGAAGCGGCCTGACCAAGGCGCTT 148
Query 37 GCCTCACGGACGCTCGCGCCTCAGGTGTGTTCATCTTTTGCTACGGGCCCTAGACAATACGATGGAACGTTCTA 110
|||||||||||||||||||||||
Sbjct 149 GCCTCACGGACGCTCGCGCCTCA--------------------------------------------------- 171
Query 111 TGAATTTCGTACTTATTACCTTAAACCTTCAAATATGAATGCGTTCATGGAAAATCTTAAGAAAAACATTCATC 184
Sbjct 172 -------------------------------------------------------------------------- 171
Query 185 TTCGGACCTCTTACTCTGAATTGGTTGGATTCTGGAGTGTAGAATTTGGAGGCAGAACGAATAAAGTGTTTCAT 258
Sbjct 172 -------------------------------------------------------------------------- 171
Query 259 ATTTGGAAGTATGATAATTTTGCTCATCGAGCTGAAGTTCGGAAAGCCTTAGCCAACTGTAAGGAATGGCAAGA 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ------------GATAATTTTGCTCATCGAGCTGAAGTTCGGAAAGCCTTAGCCAACTGTAAGGAATGGCAAGA 233
Query 333 ACAATCTATCATTCCAAATTTGGCTCGCATTGATAAACAAGAGACGGAAATTACTTACCTGATACCATGGTCCA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 ACAATCTATCATTCCAAATTTGGCTCGCATTGATAAACAAGAGACGGAAATTACTTACCTGATACCATGGTCCA 307
Query 407 AATTAGAAAAGCCTCCAAAAGAAGGAGTCTATGAACTAGCTGTTTTTCAGATGAAACCTGGTGGGCCAGCTCTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AATTAGAAAAGCCTCCAAAAGAAGGAGTCTATGAACTAGCTGTTTTTCAGATGAAACCTGGTGGGCCAGCTCTG 381
Query 481 TGGGGTGATGCATTTGAAAGAGCAATTAATGCCCATGTCAATTTAGGCTACACAAAAGTAGTTGGTGTTTTCCA 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 TGGGGTGATGCATTTGAAAGAGCAATTAATGCCCATGTCAATTTAGGCTACACAAAAGTAGTTGGTGTTTTCCA 455
Query 555 CACAGAATATGGAGAACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGGGA 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 CACAGAATATGGAGAACTCAACAGAGTTCATGTTCTTTGGTGGAATGAGAGTGCAGATAGTCGTGCAGCTGGGA 529
Query 629 GACATAAGTCCCATGAGGATCCCAGAGTTGTGGCGGCTGTTCGGGAAAGTGTCAACTACCTAGTTTCTCAGCAG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GACATAAGTCCCATGAGGATCCCAGAGTTGTGGCGGCTGTTCGGGAAAGTGTCAACTACCTAGTTTCTCAGCAG 603
Query 703 AATATGCTTCTGATTCCTGCATCATTTTCACCATTGAAA----------------------------------- 741
|||||||||||||||||||||||||||||||||||||||
Sbjct 604 AATATGCTTCTGATTCCTGCATCATTTTCACCATTGAAATAGTTTTCTACTGAAATACAAAACATTTCATTAAC 677
Query 742 -------------------------------------------------------------------------- 741
Sbjct 678 TGCTCTAAGATGTGTCTGCTAATGGTGCTTAAATTCTCCCAAGAGGTTCTCGCTTTTATTTGAAGGAGGTGGTA 751
Query 742 -------------------------------------------------------------------------- 741
Sbjct 752 AGTTAATTAGTTAATTTGCTGTGCTTCTTGCATTTTTGAAAGTTACATATTCTCCACTGCTTTAAGAAATAATT 825
Query 742 -------------------------------------------------------------------------- 741
Sbjct 826 CAGTTCACTTTCACCTTGGCATTTCAGTATCTGTTACACATTAGAAGTAGTTGTCACTATTTCATCATCTTGGT 899
Query 742 -------------------------------------------------------------------------- 741
Sbjct 900 TTTTCATTTGTTTTAGAATACCTCTTCTGTATTTTGATAACTCATTGCTTTATAGCATTTTCTTTTACTCAAAT 973
Query 742 -------------------------------------------------------------------------- 741
Sbjct 974 AAGGATTTTACATTTCCTTGCCTGACAGTATTTTTGAATTATTTATATAAAATATCTATCTTTTCATCATGTCT 1047
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1048 ATAGTTCCTGAGATTTTAAAAAAATTTGCTTAGTAAAGGTTATTTTGTGATATAAAATGGGATTTATAAAAATA 1121
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1122 TTAGATTGTTTATTTCTTTACTGTGGAAAAGTACAATGTCATCTGTATTAATTATTGCTTTTACATTCATTGAT 1195
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1196 TATTAGTCATTCTAACTTGGAAAATAATGCAATTGGGTCACAGTGTTAAAAATCTAGAAAAGACTTGTTGGTTT 1269
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1270 ATATGCTGAAATTGTTCATTTATAATTAATTTTACTAATTTCTACTTAGTTTGGATCACTAACAGAGATCTTGG 1343
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1344 GACATTTATTTGTTTTAAAGAAATATTTATGGTTATGGAAACGCTTGCCCTAATAAAAATCCTGCATATTCATT 1417
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1418 GTTTTTTTAAATTCACATTTTATACTTATATGATCTCTAAAGCTCTTGCTATGTTGCTATAAGACAGTAATATA 1491
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1492 GTGATAATTTACCAACTTTATTGAAAATGTTGTTACATCAATAAAATAGCATGCTGGGAACCTGAGAAGGAAGG 1565
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1566 TTTCTTTAGTACTGCCACAGATGTCCTGGAGTTTTCCTTGAAACATCTTTCATTTCCATTTTACTTGATGCCTC 1639
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1640 TACCTACTAAAACTAGATTTGGTACTTCCGATAGTGTATATTTACAGCTATATTATATTTACATTTTTACAGAC 1713
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1714 TATCTTCTGATAATCTGTATTTACAGCTATGTTATTTTATATTTTTAAAATCTTACAGCTATAAAATAGTAAAT 1787
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1788 TGTGAATTAGCTGTCCAAGGGCAATTTGGAAAACAAACTGTACAGTTTCCTCTCATTTATCAGGCTCTAAGCGA 1861
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1862 TCTGCAGTTTATCTGGGCTATTATGCAATGTGAGATATTATTTATGAGAGGCAGGCAGTGGCAGCTTAAACAGA 1935
Query 742 -------------------------------------------------------------------------- 741
Sbjct 1936 CATACCTCCTCAGCATTCTTTTCCATGCAGAGTTCAAAGAGGCCTAAGACATCTCACATTTATGTGAAATAGTT 2009
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2010 GAGGCACAAGTATGTGGTTAACTACACATAAATTACCAATAAAATTAAAAGTTAACTAAAATACTACAGAAGAC 2083
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2084 ATTTAATATTTTGCTTCAGACTGTTATAGTACCTTAGGGTTATGAACATCAATTACCTTTGAGCCTTACTATAT 2157
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2158 TTAAAGGGAAGGGGAAGCTGACATTTTTATCTTTTTTAATGGGTACACTCTACGTTACCTTAAAGGCTTCCCCG 2231
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2232 GTTTAAGCAAAAATAGAATTATGTGGTTTAAATCATATACCTTATTCTTCATACTTAGCTCCAAGTAGATTATG 2305
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2306 ACTTTTCCTAAAACTTAACATGACAGAGATTTGCCTTCCAGGGGGTCTAATTTGAAGAGGAAAGTAATTTAAAT 2379
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2380 GTATAGGTTTATATAATAGCATTGTATTTTTCTCTATTTTATTCATTCTTTCATTCTCTTCGATGACTCCCAGC 2453
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2454 ACCTGCGCGTCCATCTTCATTCTTAGCCAATGACCTTTCCTTTTACTTAACAGAGAAAATAACAATCAGAAGAG 2527
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2528 TCTTCATAAGTTCCCACCCCGTCTGCCCGCTTTCTACAGCCAACCCCACATGCCCTGCCTTCTCTCCTTTCACT 2601
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2602 GTGGATGAACCGCCCGTGCCCCAAGCAAAGACAAACCCTCCACTTGAACACTCACTTGCTGAAGGATGTGGCTT 2675
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2676 AGGCAGTTTTCCTGTCTCCTGAAGCCACAGTATTCCCCTTCAACTGGATTCTTCTCCTCAGCATATAAATATAC 2749
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2750 TTTTTTTTCCTATCTTTAAAAAAAAAAAAGAGTAAAATCACCCCATTTTTTTCCTTTACAATATGACTCAAAAG 2823
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2824 AGTAGTTCATACTTCCTGCCTCCATTTTCTTCCCTCACATTATCTCTTAAACATTCTCTGATCACGCCAGCCAA 2897
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2898 ATTGCTCTTGTCAACTCATTTCCCAGTTCTCATTTCACTTGACTTGTTAGCAGTTGACCTCTCCTTTCTTCTGG 2971
Query 742 -------------------------------------------------------------------------- 741
Sbjct 2972 GAAGTTTCTTCGTTTCTCCGAAACACTCACTGCACAAGCCTTCATATCTCCTAGTCTCCATCTTGTCTCTTTGA 3045
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3046 CCTCTGATGTAAGGACTGAGTCCTTGGACCACTTCTCTTTTCTATTTATACTTACTCCCTGCGTCATCACCCCC 3119
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3120 AGTCTTGTGGCTTCAAATGCTATCTGTGTGTGGATAGCTCCTCCAGTCCACACCTCTTTTCTGAATCTTTTTTC 3193
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3194 AAATTCACACATGTGAATTTGAATTCCAGGCTCATCACATCCAGGTGTGTTCCCCACACCTCCACCTGAATGTC 3267
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3268 TATTAGAAATCTCACACCCCTCTTGTCCAAAACTGAGCTCTTGATCTTTAACCAGAAACTTTATCTCAGCTATT 3341
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3342 GGCAACTCCAGGTTTCTGTTTTGCTCAGGCCACAGACTTCAGAGTCATTCTCACACTGCCTTTTCTCTCATACA 3415
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3416 CCATTATGTACCTGTCAGCAGGTCCCAAATATCTAGAATTTGATTGCTTCACATCCCTATAGCAACTCTCCTGG 3489
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3490 TTCAAGCCCATCATCATCTGGATTTTTGGGAAGTGGTCTTAACTGGTGTGCTGCCCTTCCCCTCTGCTCTCAAC 3563
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3564 CCTATTTTCAACATAGCAGTCAGAATAATCTAAAATATAAACCAGATCATATCACTCCTCTGCTCAACACCCCC 3637
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3638 TCCCAATACCTTCATGTCATCCTCAGAGTTATTGTCCAAGCCTCTAACTGTGGTCTACAAGTCTTTACATGATC 3711
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3712 TGTCCTGTTACATTTTCCACTCTCGCTCCAGACCTGACCTAAGAGGCTTTTCTCTGAACTTGCTAAACATGCTC 3785
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3786 TTACCTGAGGGTCCATTCCCACTGCCTCTGCCTGGAATGCTCTTCCCCAGACATGCATCTGCGTGGATCATTTC 3859
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3860 CATGCCTCCTCAGGTCTTTGCCCTCATGAAGCCTTCCCTGACAACCCTATTTAAGATTGTAATCCCCTCCCACA 3933
Query 742 -------------------------------------------------------------------------- 741
Sbjct 3934 GTGGCCCCTATCTGCTAGAGACTGAATGTTTTTGTCCCCCCAAAATTCCTATGTTGAAGCCTTAATCTCAACAT 4007
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4008 AGGAGGTTTGGCCTTTGTGAGTTAGTTTTAGATGAGGTCATGTGGGTAATAGAATTAGTGCATTTATAAGGGCG 4081
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4082 TGAAGAGCCCTCACTGTGAGGAAACCAGAATGTAAGCCTTCACCAGAACTTCTTCATGCTGGCACCCTGGTCTT 4155
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4156 AGACTTCCCAGCCACTAGATCTGTGAGAAAGAAATGTTTGTTGTTTAAGCCACCCTGTCTATGGTACTCTTGTT 4229
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4230 ACAGCAACCTGAACTAAGACACTATCCCTCTCCCCTGCTTTCTTTTTCTGTTATCACCATAATTAATGTTTTAC 4303
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4304 TTATATATGATTTGTTAATGTATGTCTCTTCCCACTAGAAACCGAATTCTATGACAGCAAGGGTTTTTGTTTTC 4377
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4378 ATTATTGTCATATTACCTGTGCCTGGCATGTGATAAGCCCTAAGTACTTGTTGACTGAATTAACATATGAGATC 4451
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4452 TGTGAGTCTGAAAAAAGAAGTACATCATTCCTTCACATGTCATTTTGAGCCACTGTTAACAGATTACATAACTG 4525
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4526 TTATTGGAAGTGCCTCACTACTCCATTTGGAAAGTATTCCTGGAATACACGATGAATGACTCAGTAGAAGTTCT 4599
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4600 GGCTATGGGGGAGTGCCATCAATAAATAAAAATAATACCATTGTCTGTTGGTTATAAGTTGCTGTCACAGACTA 4673
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4674 TGAAGGTATTTGAATTGTATTTTCAGGAAGAGAAACAGATATGCAACCAATCTGATTTGGTTCCACACCCTGCC 4747
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4748 ACAGAAGTCCCAAAGGAGAAGCAAATGCCACTTGTAGACTCAAACTCTGGACTTCATTCTCAGCACCATCTCTT 4821
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4822 AACCTACTGAGTAAATCCTATGAACCTGACTAGGGTGGCAACTGAAGTTGTAGTACTTTCTGTCTTCAAAGGAG 4895
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4896 GGTGAACCTGGAGTATGTTGGAAGAAGTGTTAGGTTCATTAGAGACACCTCTTTCATAACTGCTGTCACCTAGA 4969
Query 742 -------------------------------------------------------------------------- 741
Sbjct 4970 ATGTCTATTCTCTAAGCACCTTCTTGAAAGAAGCACATTCCCCCAGGAGGAGGAAATGGTTTGTTTTCTTTAGT 5043
Query 742 -------------------------------------------------------------------------- 741
Sbjct 5044 GACAGTTGGCCCAGGATCCTAAGGTAAAGGAGTATGGGCACTAGACAAAATGAGTTTTATAATAGTCGATTGGA 5117
Query 742 -------------------------------------------------------------------------- 741
Sbjct 5118 AGGAATGGAAGTTTTTGAATCACAGGCTTCTGCCTTGAAAGGGCAAGTCCGTGGTGGTCATGAACCACCCAGAG 5191
Query 742 -------------------------------------------------------------------------- 741
Sbjct 5192 TGTGTACAAGGCTCCTGCCAGAAGAAATGCCTGTAGGATTAAAAGCAAAACAGCAGAATCAAAAAGGAAGGGCA 5265
Query 742 ----------------------------------------------------------------------- 741
Sbjct 5266 CGATGATGCCCAGGTGCAGCCTATATTATTAACAGACAAGGAAAGAATCCAAATAAAAGTTCTGTAAACCA 5336
