Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03644
- Subject:
- XR_001782401.1
- Aligned Length:
- 2683
- Identities:
- 1074
- Gaps:
- 1456
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGACGCAGACTGGTTCTGCACTGCCCACTTTGTCGGGAAAGGGCCTCAGCCCTTCACTTCGAAAGAAGATTCTG 74
Query 1 -----------------ATGGCCAGCCCAAGAACCAGGAAGGTTCTTAAAGAAGTCAGGGTGCAGGATGAGAAC 57
|||||||||||||||||||||||.||||||||.||||||.|||..|||||||||||.
Sbjct 75 TCCAGAGGTGCCGCACCATGGCCAGCCCAAGAACCAGGAAAGTTCTTAAGGAAGTCCGGGCACAGGATGAGAAT 148
Query 58 AACGTTTGTTTTGAGTGTGGCGCGTTCAATCCTCAGTGGGTCAGTGTGACCTACGGCATCTGGATCTGCCTGGA 131
||.|||||.|||||||||||.|||||||||||||||||||||||.|||||.||.||||||||||||||||||||
Sbjct 149 AATGTTTGCTTTGAGTGTGGTGCGTTCAATCCTCAGTGGGTCAGCGTGACTTATGGCATCTGGATCTGCCTGGA 222
Query 132 GTGCTCGGGGAGACACCGCGGGCTTGGGGTTCACCTCAGCTTTGTGCGCTCTGTTACTATGGACAAGTGGAAGG 205
.|||||.|||||||||||.|||||||||||.||||||||||||||||||||||||||.||||||||.|||||||
Sbjct 223 ATGCTCTGGGAGACACCGTGGGCTTGGGGTGCACCTCAGCTTTGTGCGCTCTGTTACAATGGACAAATGGAAGG 296
Query 206 ACATTGAGCTTGAGAAGATGAAAGCTGGTGGGAATGCTAAGTTCCGAGAGTTCCTGGAGTCTCAGGAGGATTAC 279
||||||||||.|||||||||||.||||||||||||||||||||||||||||||||||||.|.|||||.||.||.
Sbjct 297 ACATTGAGCTGGAGAAGATGAAGGCTGGTGGGAATGCTAAGTTCCGAGAGTTCCTGGAGACACAGGACGACTAT 370
Query 280 GATCCTTGCTGGTCCTTGCAGGAGAAGTACAACAGCAGAGCCGCGGCCCTCTTTAGGGATAAGGTGGTCGCTCT 353
||.|||.|||||||..|||||||.|||||||.|||||||||||||||.|||||.|||||||||||||...||.|
Sbjct 371 GAGCCTAGCTGGTCACTGCAGGACAAGTACAGCAGCAGAGCCGCGGCGCTCTTCAGGGATAAGGTGGCTACTTT 444
Query 354 GGCCGAAGGCAGAGAGTGGTCTCTGGAGTCATCACCTGCCCAGAACTGGACCCCACCTCAGCCCAGGACGCTGC 427
|||.|||||.|.|||||||||||||||||||||.|||||.|||||||||||||||||||||||||.|||.||||
Sbjct 445 GGCAGAAGGTAAAGAGTGGTCTCTGGAGTCATCGCCTGCACAGAACTGGACCCCACCTCAGCCCAAGACACTGC 518
Query 428 CGTCCATGGTGCACCGAGTCTCTGGCCAGCCGCAGAGTGTGACCGCCTCCTCGGACAAGGCTTTTGAAGACTGG 501
.||.||..|..|||||||.||||||||||||.|||||||...|||||||...||||||||||||||||||.|||
Sbjct 519 AGTTCACTGCCCACCGAGCCTCTGGCCAGCCACAGAGTGCAGCCGCCTCTGGGGACAAGGCTTTTGAAGATTGG 592
Query 502 CTGAATGATGACCTCGGCTCCTATCAAGGGGCCCAGGGGAATCGCTACGTGGGGTTTGGGAACAC---GCCACC 572
||||||||||||||.||.|||||.||.||.||.||||.|||||||||.||.|||||||||||||| ||||
Sbjct 593 CTGAATGATGACCTGGGTTCCTACCAGGGTGCTCAGGAGAATCGCTATGTAGGGTTTGGGAACACAGTGCCA-- 664
Query 573 GCCTCAGAAGAAAGAAGATGACTTCCTCAACAACGCCATGTCCTCCCTGTACTCGGGCTGGAGCAGCTTCACCA 646
||||||||||.|||||||||||||||||||||.||||||||.||.||||||||||||||||||||.||.||||
Sbjct 665 -CCTCAGAAGAGAGAAGATGACTTCCTCAACAATGCCATGTCATCGCTGTACTCGGGCTGGAGCAGTTTTACCA 737
Query 647 CTGGAGCCAGCCGGTTTGCCTCGGCAGCCAAGGAGGGCGCTACAAAGTTTGGATCCCAAGCGAGTCAGAAGTTT 720
||||.||.|||..||||||.||.|||||.||||||||.||||||||.||||||||.|||||.||||||||||||
Sbjct 738 CTGGGGCGAGCAAGTTTGCATCTGCAGCAAAGGAGGGTGCTACAAAATTTGGATCTCAAGCAAGTCAGAAGTTT 811
Query 721 TGGGGTCACAAGCAGCAGCCGGAGCCGGCGTCCGAGCTGGGCCACAGCCTGAACGAGAACGTCCTCAAGCCTGC 794
||||||.|||||||||||.|.||||||||.||.|||.||||||||||||||||.|||||.||.|||||||||||
Sbjct 812 TGGGGTTACAAGCAGCAGTCAGAGCCGGCTTCGGAGTTGGGCCACAGCCTGAATGAGAATGTTCTCAAGCCTGC 885
Query 795 GCAGGAGAAGGTGAAGGAGGGAAAGATTTTTGATGATGTCTCCAGTGGGGTCTCTCAGTTGGCGTCCA------ 862
.||||||||||||||||||||||.|||||||||||||||.|||||||||||||||||||||||.||||
Sbjct 886 ACAGGAGAAGGTGAAGGAGGGAAGGATTTTTGATGATGTGTCCAGTGGGGTCTCTCAGTTGGCATCCAAGGTAG 959
Query 863 -------------------------------------------------------------------------- 862
Sbjct 960 GGCCTACCCTGCTGACTGCAGCACAGCCCAAGCCAGTCTCCATATTCCAGGCACGGAGCCCCACAGGGTCTTGG 1033
Query 863 -------------------------------------------------------------------------- 862
Sbjct 1034 GCCAGCTGAGGCAGTGGTCAGTGCCCTCTGGTTTCTGAGGGCTTGAGGAATATGGAAACAGCTTGGTTGTTGGG 1107
Query 863 ----------------------------------------------------------------AGGGAGTCGG 872
|||||||.||
Sbjct 1108 GACTTGCTAGCCACTAACCTGTGTTTCTTCTCTGTCTTGCTGCCATTGGCCTATCCCTTGGTCCAGGGAGTTGG 1181
Query 873 TAGTAAGGGATGGCGGGACGTCACCACCTTTTTTTCGGGGAAAGCAGAGGGCCCCTTGGACAGCCCCTCGGAGG 946
.||||||||||||||.||.|||||.||.||.||.||.||||||||.||.|.|.|.|..|||||.||||..||||
Sbjct 1182 CAGTAAGGGATGGCGTGATGTCACTACTTTCTTCTCTGGGAAAGCCGAAGACTCTTCAGACAGACCCTTAGAGG 1255
Query 947 GCCACAGTTATCAGAACAGCGGTCTGGACCACTTCCAAAACAGCAACATAGACCAGAGCTTCTGGGAGACCTTT 1020
|||||||.||.|||||||||.||...|||.|||..||.||||||||||||||||||||||||||||||||||||
Sbjct 1256 GCCACAGCTACCAGAACAGCAGTGGAGACAACTCTCAGAACAGCAACATAGACCAGAGCTTCTGGGAGACCTTT 1329
Query 1021 GGAAGTGCTGAGCCCACCAAGACCCGCAAGTCCCCGAGCAGCGACAGCTGGACGTGCGCGGACACCTCCACCGA 1094
||.||||||||||||.|||||.| |||||||||.|||||.|||||||||||.||.||.||..|.||.||.|.
Sbjct 1330 GGGAGTGCTGAGCCCCCCAAGGC---CAAGTCCCCAAGCAGTGACAGCTGGACCTGTGCAGATGCTTCAACAGG 1400
Query 1095 GAGGAGGAGCTCGGACAGCTGGGAGGTGTGGGGC------TCGGCCTCCACCAACAGGAACAGCAACAGCGACG 1162
||||||||||||||||||||||||.||.|||||| ||.||.||||.|||||.|||||||||.|||||.|
Sbjct 1401 GAGGAGGAGCTCGGACAGCTGGGACGTTTGGGGCTCAGGTTCCGCATCCAACAACAAGAACAGCAATAGCGATG 1474
Query 1163 GC------------------------GGGGAGGGCGGGG---AGGGCACCAAGAAGGCAGTGCCGCCGGCCGTG 1209
|| |||||||||.||| |||.||||||||||||| ||| ||.|
Sbjct 1475 GCTGGGAGAGTTGGGAGGGAGCCAGTGGGGAGGGCAGGGCAAAGGCCACCAAGAAGGCA--GCC-----CCAT- 1540
Query 1210 CCCA---CTGATGATGGCTGGGACAACCAGAACTGG-------------------------------------- 1242
||| |||||||.|||||||||||||||||||||
Sbjct 1541 -CCACGGCTGATGAGGGCTGGGACAACCAGAACTGGTAGGAGCCTAGCACCCTAGCCCAGCCCTGCTGGGGACC 1613
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1614 GCTGTGTTTGCACTTTGCCCTTCTTGTTCCTCCTGCATTTGACCTCAGTGTGAAGACAGTGGCTCAGGCAGGAC 1687
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1688 TTGAGTTGGTGCTGCCTGCCTGGTGTGGGGTGGCTTTCTCTTAGACCTCAGGGGACGTGTCATCCACCTGCCTC 1761
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1762 TTGGGTCCTCTGAGCAGCCCTCCTGGACTCTGGGTTCTTGGGACCCAGGCATTGTCTCTGCAGCCCTAGCACAG 1835
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1836 CCTGGGACTGCAGCCCTGTGCAATGTCAGCCAAGTCAGACATCTGCTTTCCTTGAAATGTCTTTTTAAACTTGA 1909
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1910 AAGGTCTGCTAGTTCTTTCTTCTTGAAGAAAGTGCCTGGAGCCTTAAAGCTGGAAATGAGATGACAAAAGCAAT 1983
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 1984 ACTGGAGCTCACACTGCCACCGACACCCTCACCTAAGTCCACAGCCTGTGTGGCCTGTGCTGTGAAACTCACCT 2057
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2058 TGTGACCCTCCGCCTTTCCTGCATCAGCCTGTCCAGCCCTCAGTTAAATGGGACAAACTCTCCACAGATGGCCA 2131
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2132 CACAAAGCAGACTGGGCTCTGGTCCTCCTTGGACACCTGATTTGAACTTGGCCAGCCCTGGACAGCTCAGAAAT 2205
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2206 GAGGAAAGGAGAGTAAAGGGGCCGGGAGCATTTCCTACGTATCTGCCGCTCCCACCTGGTACAGGGGAGCCTGA 2279
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2280 GCATGGAGGGGGTGCTCAGGGGCCAACTGCCACTGCCAGGGTCAAGCATCTTAATGGGGACCCTCCATCCGGGC 2353
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2354 AGAGCACCTGTTAGTATTTGCCATGCATTGTGTCTGTGACAGCCCAGGCCTTCTCCCAGCCTGTTCAGGCTGCT 2427
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2428 CAGAGCACACTTGGTTGTGTCTCCCTCAGCATGCAGCTGTCCTTCCCCACTTATCGCCATGTGGATTTTGTGGA 2501
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2502 ACACTGCAGTTGAGACCCATGTGTTATCAGTGGTTGGTGTGACAGCCGCCCCCTCCTAGGATTCCGTGACTGCT 2575
Query 1243 -------------------------------------------------------------------------- 1242
Sbjct 2576 GTGTGCTGTGGCTGGAGAGACCAGCTGGGGTCTCTGTCTCCTTAAACCCACTCCTGTCTGACCCTCAGTTTGAC 2649
Query 1243 ------------------- 1242
Sbjct 2650 CAGCAGTGCATGACCTGAA 2668
