Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_03880
• Subject: NR_045584.2
• Aligned Length: 2448
• Identities: 1633
• Gaps: 753

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGAAATAGCACACAACCACTGTGAGCTGTATGCGATTCAGAAACCAAGACCAAATTTTGCTCACTTTCATTAAT  74

Query    1  ---------------------ATGACATCTGGTTCTGTCTTCTTCTACATCTTAATTTTTGGAAAATATTTTTC  53
                                 |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CAGTTGCTCAGATAGAAGGAAATGACATCTGGTTCTGTCTTCTTCTACATCTTAATTTTTGGAAAATATTTTTC  148

Query   54  TCATGGGGGTGGACAGGATGTCAAGTGCTCCCTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCCTC  127
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCATGGGGGTGGACAGGATGTCAAGTGCTCCCTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCCTC  222

Query  128  AGCTCCTGCACTGTAACGGTGTGGACGACTGCGGGAATCAGGCCGATGAGGACAACTGTGGAGACAACAATGGA  201
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGCTCCTGCACTGTAACGGTGTGGACGACTGCGGGAATCAGGCCGATGAGGACAACTGTGGAGACAACAATGGA  296

Query  202  TGGTCTCTGCAATTTGACAAATATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAAC  275
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGTCTCTGCAATTTGACAAATATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAAC  370

Query  276  ACCTGAATGTTTGGTCGGTTCTGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGATGAAACCA  349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCTGAATGTTTGGTCGGTTCTGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGATGAAACCA  444

Query  350  ATTTACGAGCTGTTCCATCGGTTTCTTCAAATGTGACTGCAATGTCACTTCAGTGGAACTTAATAAGAAAGCTT  423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATTTACGAGCTGTTCCATCGGTTTCTTCAAATGTGACTGCAATGTCACTTCAGTGGAACTTAATAAGAAAGCTT  518

Query  424  CCTCCTGATTGCTTCAAGAATTATCATGATCTTCAGAAGCTGTACCTGCAAAACAATAAGATTACATCCATCTC  497
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCTCCTGATTGCTTCAAGAATTATCATGATCTTCAGAAGCTGTACCTGCAAAACAATAAGATTACATCCATCTC  592

Query  498  CATCTATGCTTTCAGAGGACTGAATAGCCTTACTAAACT-----------------------------------  536
            |||||||||||||||||||||||||||||||||||||||                                   
Sbjct  593  CATCTATGCTTTCAGAGGACTGAATAGCCTTACTAAACTGTCCAGAGCAGTAAAGGATGGCTCTGAAAAATGAA  666

Query  537  ------------------GTATCTCAGTCATAACAGAATAACCTTCCTGAAGCCGGGTGTTTTTGAAGATCTTC  592
                              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GAGGACTGGGCAAAACAGGTATCTCAGTCATAACAGAATAACCTTCCTGAAGCCGGGTGTTTTTGAAGATCTTC  740

Query  593  ACAGACTAGAATGGCTGATAATTGAAGATAATCACCTCAGTCGAATTTCCCCACCAACATTTTATGGACTAAAT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACAGACTAGAATGGCTGATAATTGAAGATAATCACCTCAGTCGAATTTCCCCACCAACATTTTATGGACTAAAT  814

Query  667  TCTCTTATTCTCTTAGTCCTGATGAATAACGTCCTCACCCGTTTACCTGATAAACCTCTCTGTCAACACATGCC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTCTTATTCTCTTAGTCCTGATGAATAACGTCCTCACCCGTTTACCTGATAAACCTCTCTGTCAACACATGCC  888

Query  741  AAGACTACATTGGCTGGACCTTGAAGGCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGTA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AAGACTACATTGGCTGGACCTTGAAGGCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGTA  962

Query  815  ATTTAACTGTTTTAGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATTTAACTGTTTTAGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAAA  1036

Query  889  CTGGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGCTTATATTCAAGGACCTGAAGGAGCT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CTGGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGCTTATATTCAAGGACCTGAAGGAGCT  1110

Query  963  GTCACAATTGAATCTTTCCTATAATCCAATCCAGAAAATTCAAGCAAACCAATTTGATTATCTTGTCAAACTCA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GTCACAATTGAATCTTTCCTATAATCCAATCCAGAAAATTCAAGCAAACCAATTTGATTATCTTGTCAAACTCA  1184

Query 1037  AGTCTCTCAGCCTAGAAGGGATTGAAATTTCAAATATCCAACAAAGGATGTTTAGACCTCTTATGAATCTCTCT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  AGTCTCTCAGCCTAGAAGGGATTGAAATTTCAAATATCCAACAAAGGATGTTTAGACCTCTTATGAATCTCTCT  1258

Query 1111  CACATATATTTTAAGAAATTCCAGTACTGTGGGTATGCACCACATGTTCGCAGCTGTAAACCAAACACTGATGG  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CACATATATTTTAAGAAATTCCAGTACTGTGGGTATGCACCACATGTTCGCAGCTGTAAACCAAACACTGATGG  1332

Query 1185  AATTTCATCTCTAGAGAATCTCTTGGCAAGCATTATTCAGAGAGTATTTGTCTGGGTTGTATCTGCAGTTACCT  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AATTTCATCTCTAGAGAATCTCTTGGCAAGCATTATTCAGAGAGTATTTGTCTGGGTTGTATCTGCAGTTACCT  1406

Query 1259  GCTTTGGAAACATTTTTGTCATTTGCATGCGACCTTATATCAGGTCTGAGAACAAGCTGTATGCCATGTCAATC  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCTTTGGAAACATTTTTGTCATTTGCATGCGACCTTATATCAGGTCTGAGAACAAGCTGTATGCCATGTCAATC  1480

Query 1333  ATTTCTCTCTGCTGTGCCGACTGCTTAATGGGAATATATTTATTCGTGATCGGAGGCTTTGACCTAAAGTTTCG  1406
            |||||||||||         ||||||.|   ||||..|.|.|||                              
Sbjct 1481  ATTTCTCTCTG---------CTGCTTCA---GAATTCAGTCATT------------------------------  1512

Query 1407  TGGAGAATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCATTGTCAGCTTGTAGGATCTTTGGCCATTC  1480
                  ||.|.||   |||..|.|..||||.||      ||||                            |||
Sbjct 1513  ------ATTCTAT---CATAGGAACTTGTGAAT------TACT----------------------------TTC  1543

Query 1481  TGTCCACAGAAGTATCAGTTTTACTGTTAACATTTCTGACA----------------TTGGAAAAATACATCTG  1538
              |||| |||        |||||           |.|||||                ||||.|.||        
Sbjct 1544  --TCCA-AGA--------TTTTA-----------TATGACACCTTGAGCTTGTTGCGTTGGGAGAA--------  1587

Query 1539  CATTGTCTATCCTTTTAGATGTGTGAGACCTGGAAAATGCAGAACAATTACAGTTCTG--ATTCTCATTTGGAT  1610
                        |||.||            |||||.| |||||||.|    |||..||  ||.|||||.||   
Sbjct 1588  ------------TTTCAG------------TGGAAGA-GCAGAACCA----AGTAATGCCATCCTCATCTG---  1629

Query 1611  TACTGGTTTTATAGTGGCTTTCATTCCATTGAGCAATAAGGAATTTTTCAAAAACTACTATGGCACCAATGGAG  1684
                        |||..||                                 ||||          .||||   
Sbjct 1630  ------------AGTCCCT---------------------------------AACT----------GAATG---  1645

Query 1685  TATGCTTCCCTCTTCATTCAGAAGATACAGAAAGTATTGGAGCCCAGATTTATTCAGTGGCAATTTTTCTTGGT  1758
                     ||||.|.|                             ||||         |||  ||||.||   
Sbjct 1646  ---------CTCTACGT-----------------------------GATT---------GCA--TTTTGTT---  1667

Query 1759  ATTAATTTGGCCGCATTTATCATC-ATAGTTTTTTCCTATGGAAGCATGTTTTATAGTGTTCATCAAAGTGCCA  1831
                         |||||||  || |.|.||     |||||      ||.|     |.||           |.|
Sbjct 1668  -------------CATTTAT--TCGACACTT-----CTATG------TGAT-----GGGT-----------CTA  1699

Query 1832  TAACAGCAACTGAAATACGGAATCAAGTTAAAAAAGAGATGATCCTTGCCAAACGTTTTTTCT-TTATAGTATT  1904
            .|||                           ||.|||.|.||||             |.|.|| |||.||    
Sbjct 1700  GAAC---------------------------AATAGACAAGATC-------------TGTGCTGTTAGAG----  1729

Query 1905  TACTGATGCATTATGCTGGATACCCATTTTTGTAGTGAAATTTCTTTCACTGCTTCAGGTAGAAATACCAGGTA  1978
             |||  ||||                 .|||..||..||||                 |.||||||    |.|.
Sbjct 1730  -ACT--TGCA-----------------CTTTAAAGGAAAAT-----------------GAAGAAAT----GATT  1762

Query 1979  CCATA---ACCTCTTGGGTAGTGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATACTCTG  2049
            .||||   |.||     ||||.|               |.|||     ||||||                    
Sbjct 1763  GCATAATTAACT-----GTAGAG---------------AGTAA-----CTTTGA--------------------  1791

Query 2050  ACCACAAGACCATTTAAAGAAATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGACAGCAA  2123
                                   ||.|    ||||        ||      ||||||.|.||||||        
Sbjct 1792  -----------------------GAGT----GGTT--------AC------CAAAGAGAGTCTATG--------  1816

Query 2124  AGGTCAGAAAACATATGCTCCATCATTCATCTGGGTGGAAATG------TGGCCACTGCAGGAGATGCCACCTG  2191
                     ||.|.||.|| ||||           ||.|||||      |         ||||||         
Sbjct 1817  ---------AATAGATCCT-CATC-----------TGTAAATGAATTATT---------AGGAGA---------  1851

Query 2192  AGTTAATGAAGCCGGACCTTTTCACATACCCCTGTGAAATGTCACTGATTTCTCAATCAACGAGACTCAATTCC  2265
                                     |||        |||        |||.|             |||  ||||
Sbjct 1852  -------------------------ATA--------AAA--------ATTAC-------------CTC--TTCC  1869

Query 2266  TATTCA  2271
            ||.   
Sbjct 1870  TAA---  1872