Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03880
- Subject:
- XM_006501630.2
- Aligned Length:
- 2276
- Identities:
- 1635
- Gaps:
- 394
Alignment
Query 1 ATGACATCTGGTTCTGTCTTCTTCTACATCTTAATTTTTGGAAAATATTTTTCTCATGGGGGTGGACAGGATGT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CAAGTGCTCCCTTGGCTATTTCCCCTGTGGGAACATCACAAAGTGCTTGCCTCAGCTCCTGCACTGTAACGGTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TGGACGACTGCGGGAATCAGGCCGATGAGGACAACTGTGGAGACAACAATGGATGGTCTCTGCAATTTGACAAA 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TATTTTGCCAGTTACTACAAAATGACTTCCCAATATCCTTTTGAGGCAGAAACACCTGAATGTTTGGTCGGTTC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 TGTGCCAGTGCAATGTCTTTGCCAAGGTCTGGAGCTTGACTGTGATGAAACCAATTTACGAGCTGTTCCATCGG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TTTCTTCAAATGTGACTGCAATGTCACTTCAGTGGAACTTAATAAGAAAGCTTCCTCCTGATTGCTTCAAGAAT 444
.||| ||||.||.|||.|||||||.|||||||..||.|||||..|..||||||.|||.
Sbjct 1 ---------------ATGC--TGTCCCTGCAGAGGAACTTCATAAGAACACTCCCTCCCAACGGCTTCAGGAAG 57
Query 445 TATCATGATCTTCAGAAGCTGTACCTGCAAAACAATAAGATTACA-TCCATCTCCATCTATGCTTTCAGAGGAC 517
||.|||||.||.||||||||||.||||||||||||||.|||| || |||.|...|.|||.|||.||||||||||
Sbjct 58 TACCATGAGCTGCAGAAGCTGTGCCTGCAAAACAATAGGATT-CACTCCGTGAGCGTCTCTGCCTTCAGAGGAC 130
Query 518 TGAATAGCCTTACTAAACTGTATCTCAGTCATAACAGAATAACCTTCCTGAAGCCGGGTGTTTTTGAAGATCTT 591
||...|||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||||||||||||||.
Sbjct 131 TGCGCAGCCTCACTAAACTGTACCTCAGTCATAACAGAATAACCTTCCTAAAGCCAGGAGTTTTTGAAGATCTC 204
Query 592 CACAGACTAGAATGGCTGATAATTGAAGATAATCACCTCAGTCGAATTTCCCCACCAACATTTTATGGACTAAA 665
||||||||.||||||||||||||||||||.|||||||||||||||||||||||||..||||||||.||||||||
Sbjct 205 CACAGACTGGAATGGCTGATAATTGAAGACAATCACCTCAGTCGAATTTCCCCACTCACATTTTACGGACTAAA 278
Query 666 TTCTCTTATTCTCTTAGTCCTGATGAATAACGTCCTCACCCGTTTACCTGATAAACCTCTCTGTCAACACATGC 739
||||||||||||||||||.|||||||||||.|.||||||||||||.|||||.|||||.||||||||.|||||||
Sbjct 279 TTCTCTTATTCTCTTAGTGCTGATGAATAATGCCCTCACCCGTTTGCCTGACAAACCCCTCTGTCAGCACATGC 352
Query 740 CAAGACTACATTGGCTGGACCTTGAAGGCAACCATATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAGT 813
|..|.||.||.|||||||||.||||||||||||.||||||||||||||||||||||||||||||||||||||.|
Sbjct 353 CCCGCCTGCACTGGCTGGACTTTGAAGGCAACCGTATCCATAATTTAAGAAATTTGACTTTTATTTCCTGCAAT 426
Query 814 AATTTAACTGTTTTAGTGATGAGGAAAAACAAAATTAATCACTTAAATGAAAATACTTTTGCACCTCTCCAGAA 887
||||||||||||||.||.||||||||.||||||||.|||.|||||||||||.||.|.|||.|||..||||||||
Sbjct 427 AATTTAACTGTTTTGGTAATGAGGAAGAACAAAATCAATTACTTAAATGAACATGCATTTACACACCTCCAGAA 500
Query 888 ACTGGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGCTTATATTCAAGGACCTGAAGGAGC 961
|||.|||||||||||||||||||||||||||||||||||||||||||||...|||||.|||||.||||||||||
Sbjct 501 ACTAGATGAATTGGATTTAGGAAGTAATAAGATTGAAAATCTTCCACCGAACATATTTAAGGATCTGAAGGAGC 574
Query 962 TGTCACAATTGAATCTTTCCTATAATCCAATCCAGAAAATTCAAGCAAACCAATTTGATTATCTTGTCAAACTC 1035
||||.|||||||||.||||.|||||.|||||||||||||||.|||.|||.|||||.||||.|||||.|||||||
Sbjct 575 TGTCGCAATTGAATATTTCTTATAACCCAATCCAGAAAATTGAAGTAAATCAATTCGATTGTCTTGCCAAACTC 648
Query 1036 AAGTCTCTCAGCCTAGAAGGGATTGAAATTTCAAATATCCAACAAAGGATGTTTAGACCTCTTATGAATCTCTC 1109
||||||||||||||.|||||.||.|||||||||||||||||||||||||||||||||||.||.||.||||||||
Sbjct 649 AAGTCTCTCAGCCTTGAAGGAATAGAAATTTCAAATATCCAACAAAGGATGTTTAGACCGCTCATAAATCTCTC 722
Query 1110 TCACATATATTTTAAGAAATTCCAGTACTGTGGGTATGCACCACATGTTCGCAGCTGTAAACCAAACACTGATG 1183
||||||.||||||||||||||.|||||||||||.||.|||||||||||.|||||||||||.||.|||||.||||
Sbjct 723 TCACATCTATTTTAAGAAATTTCAGTACTGTGGATACGCACCACATGTGCGCAGCTGTAAGCCCAACACGGATG 796
Query 1184 GAATTTCATCTCTAGAGAATCTCTTGGCAAGCATTATTCAGAGAGTATTTGTCTGGGTTGTATCTGCAGTTACC 1257
|.|||||||||||||||||.||||||||||||||.||.||||||||.||||||||||||||||||||..|||||
Sbjct 797 GGATTTCATCTCTAGAGAACCTCTTGGCAAGCATCATCCAGAGAGTCTTTGTCTGGGTTGTATCTGCCATTACC 870
Query 1258 TGCTTTGGAAACATTTTTGTCATTTGCATGCGACCTTATATCAGGTCTGAGAACAAGCTGTATGCCATGTCAAT 1331
||||||||||||||||||||.|||||.||||||||.||.|||||.|||||||||||||||.||||||||||.||
Sbjct 871 TGCTTTGGAAACATTTTTGTTATTTGTATGCGACCATACATCAGATCTGAGAACAAGCTGCATGCCATGTCGAT 944
Query 1332 CATTTCTCTCTGCTGTGCCGACTGCTTAATGGGAATATATTTATTCGTGATCGGAGGCTTTGACCTAAAGTTTC 1405
||||||||||||||||||.||||||.|||||||..|.|||.||||.|||||.||.|.|||||||||.|||||||
Sbjct 945 CATTTCTCTCTGCTGTGCTGACTGCCTAATGGGGGTGTATCTATTTGTGATTGGTGCCTTTGACCTCAAGTTTC 1018
Query 1406 GTGGAGAATACAATAAGCATGCGCAGCTGTGGATGGAGAGTACTCATTGTCAGCTTGTAGGATCTTTGGCCATT 1479
|.|||||.|||||||||||.||.||||.|||||||||||||..||||||||||.|..|.||.||.|||||||||
Sbjct 1019 GGGGAGAGTACAATAAGCACGCACAGCCGTGGATGGAGAGTGTTCATTGTCAGTTCATGGGGTCGTTGGCCATT 1092
Query 1480 CTGTCCACAGAAGTATCAGTTTTACTGTTAACATTTCTGACATTGGAAAAATACATCTGCATTGTCTATCCTTT 1553
|||||||||||||||||.||||||||.|||||||||||||||||||||||.||||||||||||||.||||||||
Sbjct 1093 CTGTCCACAGAAGTATCCGTTTTACTTTTAACATTTCTGACATTGGAAAAGTACATCTGCATTGTGTATCCTTT 1166
Query 1554 TAGATGTGTGAGACCTGGAAAATGCAGAACAATTACAGTTCTGATTCTCATTTGGATTACTGGTTTTATAGTGG 1627
|.|.|||.|.||.|||.||||||||||||||||.||.|||||||||.||||||||||||.|||.||||||||||
Sbjct 1167 TCGGTGTTTAAGGCCTCGAAAATGCAGAACAATCACGGTTCTGATTTTCATTTGGATTATTGGGTTTATAGTGG 1240
Query 1628 CTTTCATTCCA-TTGAGCAATAAGGAATTTTTCAAAAACTACTATGGCACCAATGGAGTATGCTTCCCTCTTCA 1700
||||...|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 1241 CTTTTGCTCCACTTG-GCAATAAGGAATTTTTCAAAAACTACTATGGCACCAATGGAGTATGCTTTCCTCTTCA 1313
Query 1701 TTCAGAAGATACAGAAAGTATTGGAGCCCAGATTTATTCAGTGGCAATTTTTCTTGGTATTAATTTGGCCGCAT 1774
|||||||||.||.|.|||||.|||||||||||||||||||||||.||||||||||||||||||..|||..||||
Sbjct 1314 TTCAGAAGACACGGGAAGTACTGGAGCCCAGATTTATTCAGTGGTAATTTTTCTTGGTATTAACCTGGTGGCAT 1387
Query 1775 TTATCATCATAGTTTTTTCCTATGGAAGCATGTTTTATAGTGTTCATCAAAGTGCCATAACAGCAACTGAAATA 1848
||||||||||.||.||.||||||||||||||||||||.||||||||||||||..||.||||||.|||.||||||
Sbjct 1388 TTATCATCATTGTGTTCTCCTATGGAAGCATGTTTTACAGTGTTCATCAAAGCTCCGTAACAGTAACCGAAATA 1461
Query 1849 CGGAATCAAGTTAAAAAAGAGATGATCCTTGCCAAACGTTTTTTCTTTATAGTATTTACTGATGCATTATGCTG 1922
|.|||.|||||.||.||.|||.||.|.||.||||||||.|||||||||||.||.||.||.||.||..|.|||||
Sbjct 1462 CAGAAGCAAGTGAAGAAGGAGGTGGTTCTCGCCAAACGCTTTTTCTTTATCGTTTTCACCGACGCGCTGTGCTG 1535
Query 1923 GATACCCATTTTTGTAGTGAAATTTCTTTCACTGCTTCAGGTAGAAATACCAGGTACCATAACCTCTTGGGTAG 1996
|||.|||||.||..||.|||||||||||||||||||||||||.||||||||||.|.|.||.|||||||||||.|
Sbjct 1536 GATTCCCATCTTCATACTGAAATTTCTTTCACTGCTTCAGGTGGAAATACCAGATTCTATTACCTCTTGGGTGG 1609
Query 1997 TGATTTTTATTCTGCCCATTAACAGTGCTTTGAACCCAATTCTCTATACTCTGACCACAAGACCATTTAAAGAA 2070
||||||||||||||||.||.|||||||||||||||||||||.||||.||..|||||||.|||||.||.||.|||
Sbjct 1610 TGATTTTTATTCTGCCTATCAACAGTGCTTTGAACCCAATTATCTACACGTTGACCACTAGACCTTTCAAGGAA 1683
Query 2071 ATGATTCATCGGTTTTGGTATAACTACAGACAAAGAAAATCTATGGACAGCAAAG---GTCAGAAAACATATGC 2141
|||||.||||...|.|||.|.||||||||||||||||..|||.|.|||||.|||| .||||||..|||||||
Sbjct 1684 ATGATCCATCAACTCTGGCACAACTACAGACAAAGAAGGTCTGTTGACAGGAAAGAGACTCAGAAGGCATATGC 1757
Query 2142 TCCATCATTCATCTGGGTGGAAATGTGGCCACTGCAGGAGATGCCACCTGAGTTAATGAAGCCGGACCTTTTCA 2215
||||||||||||||||||||||||||||||..|||||||||||.|..|||.|||.||||||||.|.|..|||||
Sbjct 1758 TCCATCATTCATCTGGGTGGAAATGTGGCCCTTGCAGGAGATGTCCTCTGGGTTCATGAAGCCAGGCGCTTTCA 1831
Query 2216 CATACCCCTGTGAAATGTCACTGATTTCTCAATCAACGAGACTCAATTCCTATTCA 2271
||.||||||||||..||||.||..|||||||.|||.|.|||||||||||.|||||.
Sbjct 1832 CAGACCCCTGTGATCTGTCGCTAGTTTCTCAGTCATCTAGACTCAATTCTTATTCG 1887
