Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03910
- Subject:
- XR_001743579.2
- Aligned Length:
- 5381
- Identities:
- 1077
- Gaps:
- 4304
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCCGGCAGGAAAGGGCGGTCCTGCGCTGTGGCCCACGCTCGCTCCCGCTGTCGGACTCTGGGCCTGGACCGCGC 74
Query 1 ------------------------------------------------------------ATGGACTGCGGCTC 14
||||||||||||||
Sbjct 75 GTGGCCGGCGCCAAAAGCGAGAGGCATGAGCGCGCGCCCGGGCCAGTGAACTGCTCGGGGATGGACTGCGGCTC 148
Query 15 GGTCGGCGGCCAGAGGACCCAGCGCCTGCCCGGCCGCCAGCGGCTTCTCTTCTTGCCCGTGGGCCTCAGCGGAA 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GGTCGGCGGCCAGAGGACCCAGCGCCTGCCCGGCCGCCAGCGGCTTCTCTTCTTGCCCGTGGGCCTCAGCGGAA 222
Query 89 GACCGGGCGGCAGCGAAACCTCAGCACGCCGCTGCCTCTCTGCGCTCTCCGACGGTCTGGGGGCGCTGCGCCCT 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GACCGGGCGGCAGCGAAACCTCAGCACGCCGCTGCCTCTCTGCGCTCTCCGACGGTCTGGGGGCGCTGCGCCCT 296
Query 163 CGCGCCCCGGCGGCCCGCGGCGGCGTGTCACGTGCCTCACCGCTGCTCCTCCTCCTGCTAGTGCCCTCCCCGCG 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGCGCCCCGGCGGCCCGCGGCGGCGTGTCACGTGCCTCACCGCTGCTCCTCCTCCTGCTAGTGCCCTCCCCGCG 370
Query 237 CTTGGCCGCCGCAGCCCCGCGCCGGCAGCTCGGGGACTGGGAGCGCTCGCGCCTCGGGTATGCCGCACCCCCGG 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTGGCCGCCGCAGCCCCGCGCCGGCAGCTCGGGGACTGGGAGCGCTCGCGCCTCGGGTATGCCGCACCCCCGG 444
Query 311 CCGGGCGCAGCAGCGCGTGGAGGTGCTCACCGGGCGTCGCCGCTGCCGCCGGCGCCCTTCCCCAGTACCACGGC 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCGGGCGCAGCAGCGCGTGGAGGTGCTCACCGGGCGTCGCCGCTGCCGCCGGCGCCCTTCCCCAGTACCACGGC 518
Query 385 CCGGCGCCTGCACTCGTTTCCTGCAGGAGAGAGCTAAGCTTGTCTGCTGGATCCCTGCAGCTGGAGCGCAAAAG 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCGGCGCCTGCACTCGTTTCCTGCAGGAGAGAGCTAAGCTTGTCTGCTGGATCCCTGCAGCTGGAGCGCAAAAG 592
Query 459 GAGAGATTTCACCTCTTCTGGGAGCAGGAAACTCTACTTCGACACTCATGCCTTAGTGTGCTTACTGGAAGACA 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GAGAGATTTCACCTCTTCTGGGAGCAGGAAACTCTACTTCGACACTCATGCCTTAGTGTGCTTACTGGAAGACA 666
Query 533 ATGGGTTTGCTACTCAACAAGCAGAAATCATTGTGTCTGCATTGGTCAAGATCCTGGAGGCCAACATGGACATC 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATGGGTTTGCTACTCAACAAGCAGAAATCATTGTGTCTGCATTGGTCAAGATCCTGGAGGCCAACATGGACATC 740
Query 607 GTCTACAAAGATATGGTCACCAAGATGCAGCAGGAAATCACTTTTCAGCAAGTAATGTCTCAGATTGCGAATGT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GTCTACAAAGATATGGTCACCAAGATGCAGCAGGAAATCACTTTTCAGCAAGTAATGTCTCAGATTGCGAATGT 814
Query 681 GAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGAAAATGAGAAAATAAAACTCG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GAAAAAGGATATGATTATTTTGGAGAAGAGTGAATTTTCAGCCCTCAGAGCAGAAAATGAGAAAATAAAACTCG 888
Query 755 AACTACATCAGTTAAAACAACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGATACCAAATTAGACTTCAAC 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AACTACATCAGTTAAAACAACAAGTAATGGATGAAGTGATCAAAGTCCGAACAGATACCAAATTAGACTTCAAC 962
Query 829 CTAGAAAAGAGCAGAGTAAAAGAATT------------------------------------------------ 854
||||||||||||||||||||||||||
Sbjct 963 CTAGAAAAGAGCAGAGTAAAAGAATTGGAGGTACTGAGACCAGAATATTTAAGGCACCAGAGAAGGAGAAGAGA 1036
Query 855 -------------------------------------------GTATTCATTGAACGAAAAGAAGCTGCTGGAA 885
|||||||||||||||||||||||||||||||
Sbjct 1037 GAGGAGTAGATCAGAATCTGACCCATGTTACGTGTTTATTTCAGTATTCATTGAACGAAAAGAAGCTGCTGGAA 1110
Query 886 TTGAGAACAGAAATAGTGGCATTGCATGCCCAGCAAGATCGGGCCCTTACCCAGACAGACAGGAAGATCGAAAC 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTGAGAACAGAAATAGTGGCATTGCATGCCCAGCAAGATCGGGCCCTTACCCAGACAGACAGGAAGATCGAAAC 1184
Query 960 TGAGGTTGCTGGCCTCAAAACCATGCTTGAGTCACACAAGCTTGATAATATTAAATATTTAGCAGGGTCTATAT 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGAGGTTGCTGGCCTCAAAACCATGCTTGAGTCACACAAGCTTGATAATATTAAATATTTAGCAGGGTCTATAT 1258
Query 1034 TTACGTGCCTAACAGTAGCTCTGGGATTTTATCGCCTGTGGATC------------------------------ 1077
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TTACGTGCCTAACAGTAGCTCTGGGATTTTATCGCCTGTGGATCTAATAAAGTGTCTATTTAAAGTGATTTCTA 1332
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1333 CTGTTTTGCCTTAAGAATACCAGATTGTTGGCTGGGTGCGGTGGCTCACACCTGTAATTCCAGCACTTTGGGAG 1406
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1407 GCTGAGGCAGGTGGATTACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACACGGTGAAACCCCGTCTCTAC 1480
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1481 TAAAAAATTAAAACATTAGGCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTAAGGTGTGA 1554
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1555 ACCTGGGAGGCGGAGCTTGTAGTGAGCCGAGATCACGTCACTGCACTCCAGCCTGGGCAACAGAGCGAGACTCC 1628
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1629 GTCTCAAAAAAAAAAAAAAAACCGGAATACCAGATTGTTGTCCTTTTGTTTTCTTGTTACACATTTGAGCCCAG 1702
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1703 ATTTTGACTTAATGTGTATTATTTATTTTTATGAAAATTGTGGACACATAACCAAGATAAAGAAGTCAGGTATT 1776
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1777 CCATAGCCATTCCTTATCTCCTTTCTGCTTAGTTGACTTTCTAGCTGAGTGGTGCACAGTGCATGGAAGATTCC 1850
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1851 ACTTAGCCGGACCAGGAAGCTTGGTCTCATCTGTGGTGCACACCAACAGCAAACATTGATGTAATTCTCTACAA 1924
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1925 CTTAATCTTTGGCACATAGAGGATTTGGGGGTCTCCATGTTCAGGGCACAATGGCTTTAATAAGTGCTGGAAAA 1998
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 1999 TCACTGAAGCTAAACCAAGAGCACCAGATCCTCTTTACCTAAATAACCAGTCTTTAACATGAGCTAGTCCCTGT 2072
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2073 ACCATAGTATTGTTTCAGCTGTAGTTGGTTGTCATGTTAATAAGACAGCTGCACGTCTACCTTCTTTTCTTTTG 2146
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2147 ATTTCCATTGTCTTGGTAAGTTATTGTTAGGGTTATTTTTAATGTGCCTTCCAGCCAGAAAAATCAGCTGTCTA 2220
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2221 AAGAAGCATTGCAATTGTAATGGGGACTCTTACCTCTTAGAATGCAAGATTTTCCCTCCTCCCTCCCTCTTCTC 2294
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2295 CATCTCTTTCCCTCATGATTTGAGAACTGTAATAATCCTCCACTGGTGGCATTACCTACCTAGAAAACCTGCTG 2368
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2369 ATTCTTAGCATGGAACTTTGCTTCAGTTTGCAGGACAAAGTCTGCTTCCTTCCGGTCTTCATTTACTTTTTATA 2442
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2443 CAAGGGATGCAGTCAGCTCTCCATGTATAAGATACCTAGATGATGGATACATATTTCATAAATGAAATTTATGT 2516
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2517 CATTAATGAATATCCCCTTGCCCACAACCAGCTCAGGCTTTCAAAATTCGAGAATGGTCATGCCACACAGCATT 2590
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2591 CTAATCTAGATGGATTAATTCTGTTGTTCAAAACATTCTCATACCTGCCTTTATATTGAAAACAAATTCTAGAT 2664
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2665 ACAACTGGGGTTATTCTGGAAAAGCACATTCTCACCTTTTTTTTTTTTTTGAGACGGAGTCTCGCACTGTCGCA 2738
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2739 GGGCTGGAGTGCATTGTCGTGATCTCTGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTC 2812
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2813 AGTCTCCTGAGTAGCTGGGATTACAGGTGCCCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGATGA 2886
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2887 GGTTTCACCATGTTGGCCAGGCTGGTCTCTAACTCCTGACCTCGTGATTCACCCGCCTTGGTCTCCCAAAGTAG 2960
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 2961 TGGGATTACAGGCGTGAGCCGCTGCGCCTGGCCCATTCTCATCTTATTCAAATTACTGGCACATGGGCAAGAGA 3034
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3035 GACAATGACATGGATAGAAGCTTTTCTGCCTTTCTCTGCACACACATACAGTGAAGGAACCACAGGCAGATTTT 3108
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3109 TTGATCAGTTTGGTGAATACATTGCTCGTTGTCACTGTTCCAACCACATTGGTAAAAAAAATAGTTACCTTTTG 3182
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3183 TCCTTTGGATGTCATGTCTAAACTTTGGAAAATATAAGTCATTGCCCTTTTAGAGAATGTTTGTGTAGTCCAAA 3256
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3257 GATTGTGAGCTCCATATAGTATGAAAATCAAGTACTTTTGCATGAGCAATAGCAGTTTCAAAGTGAAATATTAT 3330
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3331 AATTTAATCTTTTTCAAGTAGATCAAAAATTCTTAACTGATTAATAAAATATTTTATCAATATATCATCCCCCT 3404
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3405 TTCAGAGAGAAGTCCCCAGAAGAGACAGCACACTTAGCAATTGCCCTCATTATTAAAGGCCTAGGTGAGTGGCA 3478
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3479 TAAAGGGCCATATGCGATTATGTTTCAAGGTAAACATTACCTAACCTTGTGTGGGTTAAAAACAGTGAAGTGTC 3552
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3553 CTTGTATCCTGATAAAATTTTTTTTTAAATAACATGGTGGGTTGACATTTTTGCATCTGCTATAAGTTTTCTCA 3626
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3627 CATGTCGTTCTTCCTGGTGAGAGCGGGCTGCATCATTCTGGCACTTAATTTGGGTGTTCGATTTTGCTATAGAG 3700
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3701 TTCTTTGCAGTACAGCATAGCCTCTTCTTGGCCTTGGGAACAGTGAACTCTTCTTTTGATGGTGTGGATTGCAT 3774
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3775 GCATATCTGGAGAGAGGAGGGCTCAGGACTGTGTTCACTTTATTTGGTCAGATGTATTTTATTTGAAAACCATT 3848
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3849 TGAGCCCAAAATACAAGTGTACCCTTCCCACTTCTGGCTCAAGCACCCGTGAGCCGACTAGACGTAATATTAAA 3922
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3923 ACTTACTGATGCTGGGTGCGGTGGCTCATGCCTATAATCCCAGCACTTTGGGAGGCCAAGGCAGGCAGATCACC 3996
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 3997 TGAGGTCAGGAGTTGGAGACCAGACTGGCCAACATGACGAAATGCTCTCGCTACTAAAAATAGAAAAATTAGCC 4070
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4071 AGGCGTGGTGGCACACCCCTGTAATCCTAGCTACTCGGGAGGCTGAGACAGGAAAATTGCATGAACCTGGGAGG 4144
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4145 CAGAGGTTGCAGTGAGCAGAGATTACACCACTGCAACGAGACTCGGGCCCAGACGAGATCTGCCTGGGCGACAC 4218
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4219 AGTGAGACTCTGTCTCAAAATAAATAAATAAGTAAATAGAACCTCCTGAGCTACCCTGGCTTATAAGGATTCAG 4292
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4293 ATTACTTTAGGAAATTAGGCATTAGCACTAGGAGGGGGGAAGATGGCTGGCAAAACTTCTAGCTAGCAACCTAT 4366
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4367 GTCTAGCACATGGGTAACTAACCATAGCGAGATCCTGAACACATATCCTCTAGGTGCAGGTGGAGGGAACGATG 4440
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4441 TCCAATACCTGAAGCAGAATCTCACATGGACGGAACGTCTGTATTTCCCTCTCCTGCACGAATCACTCATCATT 4514
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4515 CTTGGAGGGCTTCTCTGCATTCCTCCTTTTCTTCTCTCCCCTCCCCTGCCTTTTGTCTTTTCTAAAGAGTCTGA 4588
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4589 ACTCCGATTTCCATGCTCTCCTGCTACATTAATAAGCAAAACCTGCTTGTGTGTACGGTTCTTTACTGGAAACA 4662
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4663 TGACTTTTTGTTTCTGTATTGGTTTTACTGTCATCCAGTTTTCTAGTTTAATATCTAGCAAAACTAAATCTGAA 4736
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4737 TGTACTCGCTTTTTCCGTTAAGTATGCCAAGCACCTCGGTTGAAAGGCTTGACTCAAACCAGAAGTCTTGCTGG 4810
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4811 AATTCGTCTCTGAACACTTGAAAAACAGAAACCCTGAGCCGCAACAAACATGCCTCTGTGTGTCGGGATTGCCT 4884
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4885 TTGTCTCTGCTTCCATGTGGCTTTTCCTTTTGTAGCTATGCTTAGTGACATAATCTTCCCTCTTCTAGCCTTCT 4958
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 4959 CCTTTCAAGCCTGTCTGTTAATTAACCATGTCAGTATTGGCAAGCATTTATCTTCCCCCACCCTAACATGCAAT 5032
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 5033 CTTCTAAGAATTTTGCAAAATTCTAAACAAATATAGAGATGGTATATAGAATTCATATCTAGAAAACTTTGATT 5106
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 5107 TTAATGTGAGCTTATCAAATTTGTTCTGGCTTTTTTGGCACTAAGGCAAAAACATGTTAACCAGAAATAATTTA 5180
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 5181 TTCTTCATGTATGTAAAATATTTGAGAATGTTTAGCCTTTTATTAGAATTTTATTTGGAAAATATTTATCTTTC 5254
Query 1078 -------------------------------------------------------------------------- 1077
Sbjct 5255 TACACATTTTACACTTATGTTCCTTTGCTTATAACCCAATTTCTTAACTTTTTTGTTACTTAAGCAAATATCAA 5328
Query 1078 ----------------------------------------------------- 1077
Sbjct 5329 TTATGTTTTATTATCTAATAAAGTGTAAGATTCTTACTATCTAAAATATTTAA 5381
