Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03948
Subject:
XR_001740231.1
Aligned Length:
2571
Identities:
1713
Gaps:
835

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGAAGTGGAAGTAGAAGGCGGTGGCTGAGGCGGTTCCGGAGGTTCTAGTGTCGGAGTTGGGTGCAGGCAGGTGC  74

Query    1  --------------------------------------------ATGGCCGGCGCTCGGGCCGCCGCCGCCGCT  30
                                                        ||||||||||||||||||||||||||||||
Sbjct   75  CATGGGCCCGCTTGAGGCACACTGAGGGGACGCGGGGCTGGGCCATGGCCGGCGCTCGGGCCGCCGCCGCCGCT  148

Query   31  GCCTCGGCGGGGTCCTCGGCCTCTTCAGGCAACCAGCCGCCTCAGGAGCTGGGGCTTGGGGAGCTGCTGGAGGA  104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCCTCGGCGGGGTCCTCGGCCTCTTCAGGCAACCAGCCGCCTCAGGAGCTGGGGCTTGGGGAGCTGCTGGAGGA  222

Query  105  GTTCTCCCGGACTCAGTACCGGGCCAAGGATGGCAGCGGGACCGGCGGCTCTAAG-------------------  159
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||                   
Sbjct  223  GTTCTCCCGGACTCAGTACCGGGCCAAGGATGGCAGCGGGACCGGCGGCTCTAAGTCGTCTTATCGCCAGACCT  296

Query  160  --------------------------------------------------------------------------  159
                                                                                      
Sbjct  297  GGAGGGCTTCCTGTCAGCTCAGGCCATCCCCACCCTAAGCACTGGCTGGCAGTGCGGTGGGAATCTTGCCGACC  370

Query  160  --------------------------------------------------------------------------  159
                                                                                      
Sbjct  371  CTGCCATCTCATTCCCCCACGTGGTTTTGGCAGCTTTAGCACCAAGTTTTCCAGTGGAATTCTGTTCCATCCTG  444

Query  160  -----------------------------------GTTGAGCGCATTGAGAAGAGATGTCTGGAGCTGTTTGGC  198
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct  445  CACCACAGAACTCTGATTTGACCTCAGAGATTACCGTTGAGCGCATTGAGAAGAGATGTCTGGAGCTGTTTGGC  518

Query  199  CGAGACTACTGTTTCAGCGTGATTCCAAACACGAATGGGGATATCTGTGGCCACTATCCCCGGCACATCGTGTT  272
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGAGACTACTGTTTCAGCGTGATTCCAAACACGAATGGGGATATCTGTGGCCACTATCCCCGGCACATCGTGTT  592

Query  273  CCTGGAGTATGAGAGTTCTGAGAAGGAGAAAGACACGTTTGAGAGTACCGTACAGGTGAGCAAGTTGCAAGACC  346
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCTGGAGTATGAGAGTTCTGAGAAGGAGAAAGACACGTTTGAGAGTACCGTACAGGTGAGCAAGTTGCAAGACC  666

Query  347  TCATCCACCGCAGCAAGATGGCCCGGTGCAGAGGACGGTTTGTCTGCCCAGTAATCCTGTTCAAGGGCAAGCAC  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCATCCACCGCAGCAAGATGGCCCGGTGCAGAGGACGGTTTGTCTGCCCAGTAATCCTGTTCAAGGGCAAGCAC  740

Query  421  ATTTGCAGGTCGGCCACACTGGCTGGATGGGGAGAGCTGTATGGACGCTCAGGCTACAACTATTTTTTCTCAGG  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATTTGCAGGTCGGCCACACTGGCTGGATGGGGAGAGCTGTATGGACGCTCAGGCTACAACTATTTTTTCTCAGG  814

Query  495  GGGTGCAGATGATGCCTGGGCAGATGTGGAGGACGTCACGGAGGAGGACTGTGCTCTTCGAAGTGGTGACACGC  568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGGTGCAGATGATGCCTGGGCAGATGTGGAGGACGTCACGGAGGAGGACTGTGCTCTTCGAAGTGGTGACACGC  888

Query  569  ATCTTTTTGATAAGGTCAGAGGCTATGACATCAAGCTGCTTCGATACCTGTCAGTCAAATACATCTGTGACCTG  642
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ATCTTTTTGATAAGGTCAGAGGCTATGACATCAAGCTGCTTCGATACCTGTCAGTCAAATACATCTGTGACCTG  962

Query  643  ATGGTGGAGAACAAGAAGGTGAAGTTTGGCATGAATGTAACCTCCTCTGAGAAGGTGGACAAAGCCCAGCGCTA  716
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATGGTGGAGAACAAGAAGGTGAAGTTTGGCATGAATGTAACCTCCTCTGAGAAGGTGGACAAAGCCCAGCGCTA  1036

Query  717  TGCCGACTTCACTCTCCTCTCCATCCCGTATCCAGGCTGTGAATTTTTCAAGGAATATAAAGATCGGGATTACA  790
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGCCGACTTCACTCTCCTCTCCATCCCGTATCCAGGCTGTGAATTTTTCAAGGAATATAAAGATCGGGATTACA  1110

Query  791  TGGCAGAAGGGCTCATATTTAACTGGAAGCAGGACTACGTTGATGCCCCATTGAGCATCCCCGACTTCCTGACT  864
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGGCAGAAGGGCTCATATTTAACTGGAAGCAGGACTACGTTGATGCCCCATTGAGCATCCCCGACTTCCTGACT  1184

Query  865  CACTCTCTGAACATTGACTGGAGCCAGTATCAGTGTTGGGATCTGGTGCAACAAACACAAAACTACCTGAAGCT  938
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CACTCTCTGAACATTGACTGGAGCCAGTATCAGTGTTGGGATCTGGTGCAACAAACACAAAACTACCTGAAGCT  1258

Query  939  GCTGCTTTCCTTAGTTAACAGTGATGATGACAGCGGGCTGCTGGTACACTGTATCTCAGGCTGGGATCGGACCC  1012
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GCTGCTTTCCTTAGTTAACAGTGATGATGACAGCGGGCTGCTGGTACACTGTATCTCAGGCTGGGATCGGACCC  1332

Query 1013  CCCTCTTCATCTCCCTCCTGCGCCTTTCCTTGTGGGCTGATGGGCTCATCCACACGTCCCTGAAGCCCACTGAG  1086
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CCCTCTTCATCTCCCTCCTGCGCCTTTCCTTGTGGGCTGATGGGCTCATCCACACGTCCCTGAAGCCCACTGAG  1406

Query 1087  ATCCTCTACCTCACTGTGGCCTATGACTGGTTCCTCTTCGGGCACATGTTGGTAGATCGGCTCAGCAAAGGGGA  1160
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  ATCCTCTACCTCACTGTGGCCTATGACTGGTTCCTCTTCGGGCACATGTTGGTAGATCGGCTCAGCAAAGGGGA  1480

Query 1161  GGAGATTTTCTTCTTCTGCTTCAATTTTTTGAAGCATATTACCTCCGAGGAGTTCTCTGCTCTGAAGACCCAGA  1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GGAGATTTTCTTCTTCTGCTTCAATTTTTTGAAGCATATTACCTCCGAGGAGTTCTCTGCTCTGAAGACCCAGA  1554

Query 1235  GGAGGAAGAGTTTGCCAGCCCGGGATGGAGGCTTCACCCTGGAAGACATCTGCATGCTGAGACGAAAGGACCGT  1308
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GGAGGAAGAGTTTGCCAGCCCGGGATGGAGGCTTCACCCTGGAAGACATCTGCATGCTGAGACGAAAGGACCGT  1628

Query 1309  GGCAGCACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGAGTTCCCCAGGAGCCACTGGGAGCTTCAC  1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGCAGCACCACCAGCCTTGGCAGCGACTTCTCCCTGGTCATGGAGAGTTCCCCAGGAGCCACTGGGAGCTTCAC  1702

Query 1383  CTATGAGGCCGTGGAGCTGGTCCCAGCAGGAGCGCCAACTCAGGCAGCTTG----GAGGAAGAGCCACT-----  1447
            |||||||||||||||||||||||||||||||||||||||||||||||||||    |.|||..|.||.||     
Sbjct 1703  CTATGAGGCCGTGGAGCTGGTCCCAGCAGGAGCGCCAACTCAGGCAGCTTGATCAGTGGACCATCCCCTGCCCG  1776

Query 1448  CATC----CTCTCCACAGAGTGTCCTCTGGAACCGGCCA-----CAACCCTCAGAGGACCGCT-TGCC----TT  1507
            .|||    |||||||||||     ||.|||.|.|.|.||     .|||       ||   ||| ||.|    ||
Sbjct 1777  GATCCTCTCTCTCCACAGA-----CTATGGCAGCTGGCAGATGGTAAC-------GG---GCTGTGGCAGTATT  1835

Query 1508  CCCAGCAG-GGGCTGGCGGAAGCCAGGTCTTC---CAG-CTCCTCTTCCTCAAACCATTCTGATAACTTTTTCA  1576
              |||.|| ||||||.|           ||.|   ||| |||||||  |||   ||.|||.|      .||.|.
Sbjct 1836  --CAGGAGCGGGCTGTC-----------CTGCACACAGACTCCTCT--CTC---CCTTTCAG------CTTCCC  1885

Query 1577  GGATGGGTAGCAGTCCCCTGGAGGTCCCCAAACCCAG------GCTTGCAGCCCTGAGTGATCGAGAGACTCGG  1644
            ||||                |||.||||.||   |||      |||||||||||||||||||||||||||||||
Sbjct 1886  GGAT----------------GAGCTCCCTAA---CAGTTGTCTGCTTGCAGCCCTGAGTGATCGAGAGACTCGG  1940

Query 1645  CTGCAGGAGGTGCGCTCAGCCTTCTTGGCTGCGTACAGCAGCACAGTGGGGCTTCGGGCAGTAGCCCCCAGTCC  1718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1941  CTGCAGGAGGTGCGCTCAGCCTTCTTGGCTGCGTACAGCAGCACAGTGGGGCTTCGGGCAGTAGCCCCCAGTCC  2014

Query 1719  TTCCGGTGCCATCGGGGGCCTGCTGGAGCAATTTGCCCGTGGTGTTGGACTCCGGAGCATCAGCAGCAATGCCT  1792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2015  TTCCGGTGCCATCGGGGGCCTGCTGGAGCAATTTGCCCGTGGTGTTGGACTCCGGAGCATCAGCAGCAATGCCT  2088

Query 1793  TG------------------------------------------------------------------------  1794
            ||                                                                        
Sbjct 2089  TGTGAAGAAGCCAGCCCATGACATTTTCCTGCTCCTCTCTCAGCTGAGCCCTTAGCAGAGAATCAAAGCCATGC  2162

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2163  CTGGCCGAAGGGGTACTTCCAGGTCAGGGGAAATTTCAGTCCCCCATCTCCATCATGAACATGGCAGCCCCAAA  2236

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2237  GCTGAGCAAGGCCAAAGACAGGGTTTTCCAACCCCCAGCCTCTTGACTGGTGACCACCACCCCTTCTTGTCACT  2310

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2311  GTCTCCCACCCACCCCATCTTTGCTGGGATTCCCATCAACTCTCAGAACTGTGTGGGGTTTCCCTGGGGCCTTG  2384

Query 1795  --------------------------------------------------------------------------  1794
                                                                                      
Sbjct 2385  TGGAAGCCATGACTTCACAAAGACCCTACCTGTCAGTTCTTGTTTCTGGGGAGGAGGGATCACCTGCACTGAGA  2458

Query 1795  -------------------------------------------------------  1794
                                                                   
Sbjct 2459  ATGAGGCAGTTTGACACAGATCACAAAATAAAATCAAAGTCTTTTTGAATAGCCA  2513

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