Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_04085
• Subject: NM_024539.3
• Aligned Length: 1371
• Identities: 1024
• Gaps: 252

Alignment

Query    1  ATGGGGCCGCCGCCTGGGGCCGG--------GGTCTCCTGCCGCGGTG---------GCTGCGGCTTTTCC---  54
            |||...|.|..|..|.||.||.|        || |||||       ||         .||     ||||.|   
Sbjct    1  ATGAACCAGGAGAATAGGTCCAGTTTTTTTTGG-CTCCT-------TGTAATTTTTACCT-----TTTTACTTA  61

Query   55  AGATTGCTGGCATGGTGCTTCCTGCTGGCCCTGAGTCCGCAGGCACCCGGTTCCCGGGGGGCTGAAGCAGTG--  126
            |.|||.| .||||    |||     |..|..|||||.|..|.|                   |||  |.|||  
Sbjct   62  AAATTAC-AGCAT----CTT-----TTTCAATGAGTGCCTATG-------------------TGA--CTGTGAC  104

Query  127  ---------TGGACCGCGTACC-TCAACGTGTCCTGGCGGGTTCCGCACACGGGA----------GTGAACCGT  180
                     ||.|      ||| .||||                  .||||.|.|          |||||    
Sbjct  105  TTATTACAATGAA------ACCAGCAAC------------------TACACTGCAATAGAGACATGTGAA----  150

Query  181  ACGGTGTGGGAGCTGAGCGAGGAGGGCGTGTACGGCCAGGACTCGCCGCTGGAGCCTGTGGCT---------GG  245
                |||                 |||||.||     .|||.|.||..|    .||.||||||         ||
Sbjct  151  ----TGT-----------------GGCGTTTA-----TGGATTAGCTTC----ACCAGTGGCTAATGCTATGGG  194

Query  246  GGTCCTGGTACCGCCCGACGGGC--CCGGGGCGCT--------TAAC------GCCTGTAACCCGCACAC-GAA  302
            .|   |||||          |||  ||      ||        ||||      ||.|||.|||...|||| || 
Sbjct  195  AG---TGGTA----------GGCATCC------CTAAGAACAATAACTACCAAGCTTGTGACCACAACACTGA-  248

Query  303  TTTCACGGTGCCCACGGTTTGG--------GGAAGCACCGTGCAAGTCTCTTGGTTGGCCCTCATCCAACGCGG  368
                            ||||.|        .|||||             |.|||.|.||.||.||..||.|.||
Sbjct  249  ----------------GTTTAGTAATACTAAGAAGC-------------CCTGGATTGCGCTGATAGAAAGAGG  293

Query  369  CGGGGGC----TGCACCTTCGCAGACAAGAT----CCATCTGGCTTATGAGAGAGGGGCGTCTGGAGCCGTCAT  434
                       ||.||.||..||||.||.||    .||.|.|||  |..|||.|.|     |||..||.||..|
Sbjct  294  -------TAATTGTACATTTTCAGAAAAAATTCAAACAGCGGGC--AGAAGAAATG-----CTGATGCTGTTGT  353

Query  435  CTTTAAC--TTC-CCCGGGACCCGCAATGAGGTCATCCCCATGTCTCACCCGGGTGCAGTAGACATTGTTGCAA  505
            ..||.||  |.| ||.|.|||..|||||.||...||.|..|||.|..|....||||||||||||||||||||||
Sbjct  354  GATTTACAATGCTCCAGAGACTGGCAATCAGACGATACAGATGGCAAATTTTGGTGCAGTAGACATTGTTGCAA  427

Query  506  TCATGATCGGCAATCTGAAAGGCACAAAAATTCTGCAATCTATTCAAAGAGGCATACAAGTGACAATGGTCATA  579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  428  TCATGATCGGCAATCTGAAAGGCACAAAAATTCTGCAATCTATTCAAAGAGGCATACAAGTGACAATGGTCATA  501

Query  580  GAAGTAGGGAAAAAACATGGCCCTTGGGTGAATCACTATTCAATTTTTTTCGTTTCTGTGTCCTTTTTTATTAT  653
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  502  GAAGTAGGGAAAAAACATGGCCCTTGGGTGAATCACTATTCAATTTTTTTCGTTTCTGTGTCCTTTTTTATTAT  575

Query  654  TACGGCGGCAACTGTGGGCTATTTTATCTTTTATTCTGCTCGAAGGCTACGGAATGCAAGAGCTCAAAGCAGGA  727
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  576  TACGGCGGCAACTGTGGGCTATTTTATCTTTTATTCTGCTCGAAGGCTACGGAATGCAAGAGCTCAAAGCAGGA  649

Query  728  AGCAGAGGCAATTAAAGGCAGATGCTAAAAAAGCTATTGGAAGGCTTCAACTACGCACACTGAAACAAGGAGAC  801
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  650  AGCAGAGGCAATTAAAGGCAGATGCTAAAAAAGCTATTGGAAGGCTTCAACTACGCACACTGAAACAAGGAGAC  723

Query  802  AAGGAAATTGGCCCTGATGGAGATAGTTGTGCTGTGTGCATTGAATTGTATAAACCAAATGATTTGGTACGCAT  875
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  724  AAGGAAATTGGCCCTGATGGAGATAGTTGTGCTGTGTGCATTGAATTGTATAAACCAAATGATTTGGTACGCAT  797

Query  876  CTTAACGTGCAACCATATTTTCCATAAGACATGTGTTGACCCATGGCTGTTAGAACACAGGACTTGCCCCATGT  949
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  798  CTTAACGTGCAACCATATTTTCCATAAGACATGTGTTGACCCATGGCTGTTAGAACACAGGACTTGCCCCATGT  871

Query  950  GCAAATGTGACATACTCAAAGCTTTGGGAATTGAGGTGGATGTTGAAGATGGATCAGTGTCTTTACAAGTCCCT  1023
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  872  GCAAATGTGACATACTCAAAGCTTTGGGAATTGAGGTGGATGTTGAAGATGGATCAGTGTCTTTACAAGTCCCT  945

Query 1024  GTATCCAATGAAATATCTAATAGTGCCTCCTCCCATGAAGAGGATAATCGCAGCGAGACCGCATCATCTGGATA  1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  946  GTATCCAATGAAATATCTAATAGTGCCTCCTCCCATGAAGAGGATAATCGCAGCGAGACCGCATCATCTGGATA  1019

Query 1098  TGCTTCAGTACAGGGAACAGATGAACCGCCTCTGGAGGAACACGTGCAGTCAACAAATGAAAGTCTACAGCTGG  1171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020  TGCTTCAGTACAGGGAACAGATGAACCGCCTCTGGAGGAACACGTGCAGTCAACAAATGAAAGTCTACAGCTGG  1093

Query 1172  TAAACCATGAAGCAAATTCTGTGGCAGTGGATGTTATTCCTCATGTTGACAACCCAACCTTTGAAGAAGACGAA  1245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1094  TAAACCATGAAGCAAATTCTGTGGCAGTGGATGTTATTCCTCATGTTGACAACCCAACCTTTGAAGAAGACGAA  1167

Query 1246  ACTCCTAATCAAGAGACTGCTGTTCGAGAAATTAAATCT  1284
            |||||||||||||||||||||||||||||||||||||||
Sbjct 1168  ACTCCTAATCAAGAGACTGCTGTTCGAGAAATTAAATCT  1206