Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04249
- Subject:
- NM_019670.1
- Aligned Length:
- 3520
- Identities:
- 2211
- Gaps:
- 980
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGAGGCACCGGGCGCGCGCTCTCGGCCGGGACAGCAAGTCGTCGCGGAGGAAGGGCTTGCAGTCCGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCGCTGGCCCCTACGAGCCCGGGGAGAAGCGACCCAAGTTGCATTTAAATATTAGAACACTGACAGATGATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGCTGGACAAATTTGCCAGTATAAGAATTCCAGGGAGCAAGAAAGAGAGACCTCCCCTTCCCCACCTGAAGACT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTGTCTGGGATCAGTGACAGCTCATCACTGTCCTCAGAGACAATGGAAAACAACCCAAAGGCGCTGCCAGAGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGAAGTCTTGAAGCTTTTTGAGAAGATGATGGAAGATATGAATTTAAATGAAGATAAAAAGGCACCATTGCGGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAAAGACTTCGGTATCAAAAAAGAAATGGTGATGCAGTACATTAATACTGCTTCTAAGACAGGAAGTCTTAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGTAGCCGACAGATCTCACCTCAGGAATTTCTCCATGAGCTGAAAATGGGTTACACAGACGAGAGACTTTTCAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTATCTGGAGTCACTCCGAGTATCATTGACCAGTCATCCTGTGAGTTGGGTGCAAAGCTTTGGACACGAGGGAC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TCGGATTATTGCTGGACATTTTGGAAAAACTAATTAATGGGCAAATCCAAGAAAAAGTTGTGAAGAAGACTCAG 666
Query 1 ------------------------------------------------------------ATGAGTGAGGAGAG 14
||||||||..||||
Sbjct 667 CACAAAGTCATCCAGTGTCTGAGAGCCCTGATGAACACACAGTATGGCTTAGAAAGGATTATGAGTGACAAGAG 740
Query 15 GAGCCTTTCCTTATTGGCCAAAGCCGTGGATCCCAGACACCCCAATATGATGACAGATGTGGTTAAACTTCTCT 88
|||.||||||||.|||||.||||||.||||||||||.||.|||..|||||||.||||.|||||.||.|||||.|
Sbjct 741 GAGTCTTTCCTTGTTGGCAAAAGCCATGGATCCCAGGCAGCCCGCTATGATGGCAGACGTGGTGAAGCTTCTGT 814
Query 89 CTGCGGTATGCATTGTAGGGGAAGAAAGCATCCTTGAAGAAGTTTTAGAAGCTTTAACTTCAGCTGGTGAAGAA 162
||||.||.||||||||.||.||.||||||||||||||||||||.||||||||.||.|||||||||||.||||||
Sbjct 815 CTGCAGTGTGCATTGTCGGCGAGGAAAGCATCCTTGAAGAAGTGTTAGAAGCCTTGACTTCAGCTGGAGAAGAA 888
Query 163 AAAAAAATTGACAGATTTTTTTGTATTGTGGAAGGCCTCCGGCACAATTCAGTTCAACTGCAAGTAGCTTGTAT 236
|.|||.||||||||||||||||..||||||||||||||||||||.||.|||||..|.||||||||.||||||||
Sbjct 889 AGAAAGATTGACAGATTTTTTTCCATTGTGGAAGGCCTCCGGCATAACTCAGTGAACCTGCAAGTTGCTTGTAT 962
Query 237 GCAGCTCATCAATGCCCTGGTTACATCTCCTGATGATTTGGATTTCAGGCTTCACATCAGAAATGAATTTATGC 310
|||||||||.|||||.||.|||||||||||||||||||||||.||||||||||||.||||||||||||||||||
Sbjct 963 GCAGCTCATAAATGCTCTCGTTACATCTCCTGATGATTTGGACTTCAGGCTTCACCTCAGAAATGAATTTATGC 1036
Query 311 GTTGTGGATTGAAAGAGATATTGCCAAATTTAAAATGCATTAAGAATGATGGCCTGGATATCCAACTTAAAGTC 384
||||||||||||||||||||||||||||.|||||..|||||||||||||||||||||||||.||||||||||||
Sbjct 1037 GTTGTGGATTGAAAGAGATATTGCCAAACTTAAAGGGCATTAAGAATGATGGCCTGGATATACAACTTAAAGTC 1110
Query 385 TTTGATGAGCATAAAGAAGAAGATTTGTTTGAGTTATCCCATCGCCTTGAAGATATTAGAGCTGAACTTGATGA 458
|||||||||||.|||||||||||||||..||||||.|.|||||||||||||||.||||||||||||||||||||
Sbjct 1111 TTTGATGAGCACAAAGAAGAAGATTTGAGTGAGTTTTTCCATCGCCTTGAAGACATTAGAGCTGAACTTGATGA 1184
Query 459 AGCATATGATGTTTACAACATGGTGTGGAGCACAGTTAAAGAAACTAGAGCAGAGGGATATTTTATTTCTATTC 532
|||||.|||||||||||.||||.|.|||..|||||||||.||||||.|||||||||||.|||||.|||||||||
Sbjct 1185 AGCATCTGATGTTTACAGCATGTTATGGGACACAGTTAAGGAAACTCGAGCAGAGGGACATTTTCTTTCTATTC 1258
Query 533 TTCAGCATCTTTTGCTGATTCGAAATGATTATTTTATAAGGCAACAATACTTCAAATTAATTGATGAGTGTGTA 606
||||||||||..||||.|||||.||||||..|||||||||..|.||.||.|||||||||||||||||||||||.
Sbjct 1259 TTCAGCATCTCCTGCTCATTCGCAATGATCGTTTTATAAGAGAGCAGTATTTCAAATTAATTGATGAGTGTGTG 1332
Query 607 TCCCAGATTGTATTGCATAGAGATGGAATGGATCCAGACTTCACATATCGAAAAAGACTAGATTTAGATTTAAC 680
||.|||||||||||.|||||||||||||.|||.||.|||||||||||..||||||||||||||||.||.||||.
Sbjct 1333 TCACAGATTGTATTACATAGAGATGGAACGGACCCTGACTTCACATACAGAAAAAGACTAGATTTGGACTTAAG 1406
Query 681 CCAGTTTGTAGACATTTGCATAGATCAAGCAAAACTAGAAGAGTTTGAAGAGAAAGCATCAGAACTTTACAAGA 754
.|||||||||||..|||||||||||||.||.||||||||.||||..||||||||||||||.||||.||.|||||
Sbjct 1407 TCAGTTTGTAGATGTTTGCATAGATCAGGCCAAACTAGATGAGTGGGAAGAGAAAGCATCCGAACATTGCAAGA 1480
Query 755 AATTTGAAAAAGAGTTTACCGACCACCAAGAAACTCAGGCTGAATTGCAGAAAAAAGAGGCAAAGATTAATGAG 828
|||||||||||||||.|||.||||||||||||||.||||||.||||||||||||.|||||||||||||||||||
Sbjct 1481 AATTTGAAAAAGAGTGTACTGACCACCAAGAAACCCAGGCTCAATTGCAGAAAAGAGAGGCAAAGATTAATGAG 1554
Query 829 CTTCAAGCAGAGCTACAAGCTTTTAAGTCTCAGTTTGGTGCCTTGCCAGCTGATTGTAATATTCCTTTGCCTCC 902
||||||||||||.|||||||||||||.||.||||||||||||||||||.|||.|...||.||||||||||..||
Sbjct 1555 CTTCAAGCAGAGTTACAAGCTTTTAAATCCCAGTTTGGTGCCTTGCCACCTGGTACAAAAATTCCTTTGCAACC 1628
Query 903 CTCTAAAGAAGGTGGAACTGGCCACTCAGCACTTCCTCCTCCGCCTCCACTGCCTTCTGGTGGAGGGGTGCCGC 976
.||...||||||||.|.||||||..|||||.|||||||||.|.||.||| ||..|| .|||||||.|||||||
Sbjct 1629 TTCAGTAGAAGGTGAAGCTGGCCCTTCAGCCCTTCCTCCTGCCCCACCA--GCACTC-AGTGGAGGAGTGCCGC 1699
Query 977 CT------CCACCTCCTCCCCCACCACCTCCTCCACTTCCAGGAATGCGGATGCCATTCAGTGGTCCTGTGCCT 1044
|| ||.||.|||||.||||||||.||.|||||.||||||||||..||||||||..||||.|||||.||.
Sbjct 1700 CTCCCCCACCGCCCCCTCCTCCACCACCCCCACCACTCCCAGGAATGCCAATGCCATTTGGTGGCCCTGTACCA 1773
Query 1045 CCACCACCTCCCCTGGGATTCCTTGGAGGACAAAATTCTCCTCCTCTACCAATCCTGCCATTTGGGTTGAAACC 1118
|||||||||||.|||||||||||.||.||.||||..|||..||| |..||.||||||||||||.||||||||
Sbjct 1774 CCACCACCTCCTCTGGGATTCCTGGGTGGGCAAAGCTCTATTCC---ATTAAACCTGCCATTTGGTTTGAAACC 1844
Query 1119 AAAGAAAGAATTTAAACCTGAAATCAGCATGAGAAGATTGAATTGGTTAAAGATCAGACCTCATGAAATGACTG 1192
|||||||||||||||.|||||||||||||||||||||||||||||||||||||||.||||..||||||||.|||
Sbjct 1845 AAAGAAAGAATTTAAGCCTGAAATCAGCATGAGAAGATTGAATTGGTTAAAGATCGGACCAAATGAAATGTCTG 1918
Query 1193 AAAACTGTTTCTGGATAAAAGTAAATGAAAATAAGTATGAAAACGTGGATTTGCTTTGTAAACTTGAGAATACA 1266
|.|||||.||||||||.||||||||||||||||||||||||||...||||||||||||||||||||||||.||.
Sbjct 1919 AGAACTGCTTCTGGATCAAAGTAAATGAAAATAAGTATGAAAATAGGGATTTGCTTTGTAAACTTGAGAACACT 1992
Query 1267 TTTTGTTGCCAACAAAAAGAGAGAAGAGAAGAGGAA-GATATTGAAGAGAAGAAATCGATTAAGAAAAAAATTA 1339
||||||||||||.|||||||||.||| |||.|..|| ||..||||.|||||||||...||||||||.|.|||.|
Sbjct 1993 TTTTGTTGCCAAGAAAAAGAGAAAAG-GAATACAAATGACTTTGATGAGAAGAAAGTTATTAAGAAGAGAATGA 2065
Query 1340 AAGAACTTAAGTTTTTAGATTCTAAAATTGCCCAGAACCTTTCAATCTTCCTGAGCTCTTTTCGGGTGCCATAT 1413
|.||||||||.|||.|||||.||||||||||.||||||||||||||||||||||||||.||.||||||||||||
Sbjct 2066 AGGAACTTAAATTTCTAGATCCTAAAATTGCTCAGAACCTTTCAATCTTCCTGAGCTCCTTCCGGGTGCCATAT 2139
Query 1414 GAGGAAATCAGAATGATGATATTGGAAGTAGATGAAACACGGTTGGCAGAGTCTATGATTCAGAACTTAATAAA 1487
|||.|||||||.|.|||||||||||||||.||||||||||.||||.|||||||.||||||||||||||||||||
Sbjct 2140 GAGAAAATCAGGACGATGATATTGGAAGTGGATGAAACACAGTTGTCAGAGTCCATGATTCAGAACTTAATAAA 2213
Query 1488 GCATCTTCCTGATCAAGAGCAATTAAATTCATTGTCTCAGTTCAAGAGTGAATATAGCAACTTATGTGAACCTG 1561
|||.|||||||||.|.|||||.||.||.||||||||.|||||.|..|||||.||||.||..||.|||||.||||
Sbjct 2214 GCACCTTCCTGATGAGGAGCAGTTGAAGTCATTGTCCCAGTTTAGAAGTGACTATAACAGTTTGTGTGAGCCTG 2287
Query 1562 AGCAGTTTGTGGTTGTGATGAGCAATGTGAAGAGACTACGGCCACGGCTCAGTGCTATTCTCTTTAAGCTTCAG 1635
|||||||.|..||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.
Sbjct 2288 AGCAGTTCGCTGTTGTGATGAGCAATGTGAAGAGACTCCGGCCACGGCTCAGTGCTATTCTCTTTAAGCTTCAA 2361
Query 1636 TTTGAAGAGCAGGTGAACAACATCAAACCTGACATCATGGCTGTCAGTACTGCCTGCGAAGAGATAAAGAAGAG 1709
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.||||||||
Sbjct 2362 TTTGAAGAGCAGGTGAACAACATCAAACCTGACATCATGGCTGTCAGTACTGCCTGCGAGGAGATCAAGAAGAG 2435
Query 1710 CAAAAGCTTTAGCAAGTTGCTGGAACTTGTATTGCTAATGGGAAACTACATGAATGCTGGCTCCCGGAATGCTC 1783
||||.|||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 2436 CAAAGGCTTTAGCAAGTTGCTGGAACTTGTGTTGCTAATGGGAAACTACATGAATGCTGGCTCCCGGAATGCTC 2509
Query 1784 AAACCTTCGGATTTAACCTTAGCTCTCTCTGTAAACTAAAGGACACAAAATCAGCAGATCAGAAAACAACGCTA 1857
||||||||||||||.||||||||||||||||||||||.|||||.||||||||.||||||||||||||.||.||.
Sbjct 2510 AAACCTTCGGATTTGACCTTAGCTCTCTCTGTAAACTGAAGGATACAAAATCTGCAGATCAGAAAACCACACTC 2583
Query 1858 CTTCATTTCCTGGTAGAAATATGTGAAGAGAAGTACCCTGATATACTGAATTTTGTGGATGATTTGGAACCTTT 1931
||.||||||||||||||..||||||||||.|||.|..||||.||.||..|.||||||||.|||||||.||.|||
Sbjct 2584 CTCCATTTCCTGGTAGATGTATGTGAAGAAAAGCATGCTGACATCCTTCACTTTGTGGACGATTTGGCACATTT 2657
Query 1932 AGACAAAGCTAGTAAAGTCTCTGTAGAAACGCTGGAAAAGAATTTGAGGCAGATGGGAAGGCAGCTTCAACAGC 2005
||||||||||||.|.||||||||||||||.||||||||||||..|||.||||||||||||||||||||||||||
Sbjct 2658 AGACAAAGCTAGCAGAGTCTCTGTAGAAATGCTGGAAAAGAACGTGAAGCAGATGGGAAGGCAGCTTCAACAGC 2731
Query 2006 TTGAGAAGGAATTGGAAACCTTTCCCCCTCCTGAGGACTTGCATGACAAGTTTGTGACAAAGATGTCCAGATTT 2079
||||||||.|.||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||.
Sbjct 2732 TTGAGAAGAATTTGGAAACCTTTCCCCCTCCTGAGGACTTGCATGACAAGTTTGTGATAAAGATGTCCAGCTTC 2805
Query 2080 GTTATCAGTGCAAAAGAACAATATGAGACACTTTCGAAGTTACACGAAAACATGGAAAAGTTATACCAGAGTAT 2153
|||||||||||.||.||.||.|||||.|.|||.||.|...|||..|..|.||||..|.|.||.|||||||||||
Sbjct 2806 GTTATCAGTGCGAACGAGCAGTATGAAAAACTCTCCACACTACTGGGCAGCATGACACAATTGTACCAGAGTAT 2879
Query 2154 AATAGGATACTATGCCATTGATGTGAAGAAGGTGTCTGTGGAAGACTTTCTTACTGACCTGAATAACTTCAGAA 2227
|||.||.||||||||..|.||..||||||||||.||.||||||||.|||.|||.|||.|||||.||||||||||
Sbjct 2880 AATGGGCTACTATGCTGTCGACATGAAGAAGGTTTCCGTGGAAGAGTTTTTTAATGATCTGAACAACTTCAGAA 2953
Query 2228 CCACATTCATGCAAGCAATAAAGGAGAATATCAAAAAAAGAGAAGCAGAGGAAAAAGAAAAACGTGTCAGAATA 2301
|..||||.||||.||||.|||||||.||.|||||||||.|||||||||..|||||.||.|||||||.|||.|||
Sbjct 2954 CTTCATTTATGCTAGCATTAAAGGAAAACATCAAAAAACGAGAAGCAGCAGAAAAGGAGAAACGTGCCAGGATA 3027
Query 2302 GCTAAAGAATTAGCAGAGCGAGAAAGACTCGAACGCCAACAAAAGAAAAAGCGTTTATTAGAAATGAAGACTGA 2375
||.|||||...|||||||..|||..||||.||||||||.|||.||||||||||.|||.||||||||||.|||||
Sbjct 3028 GCGAAAGAGCGAGCAGAGAAAGAGCGACTTGAACGCCAGCAAGAGAAAAAGCGCTTACTAGAAATGAAAACTGA 3101
Query 2376 GGGTGATGAGACAGGAGTGATGGATAATCTGCTGGAGGCCTTGCAGTCCGGGGCTGCCTTCCGCGACAGAAGAA 2449
|||.||||||||||||||||||||||.|||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 3102 GGGAGATGAGACAGGAGTGATGGATAGTCTGCTGGAGGCCTTGCAGTCAGGGGCTGCCTTCCGCGACAGAAGAA 3175
Query 2450 AAAGGACACCGATGCCAAAAGATGTTCGGCAGAGTCTCAGTCCAATGTCTCAGAGGCCTGTTCTGAAAGTTTGT 2523
||||||||||.|.||..||||||.||||||||||||||||.||.||||||||||||||||||||.|||||||||
Sbjct 3176 AAAGGACACCAAAGCTGAAAGATATTCGGCAGAGTCTCAGCCCGATGTCTCAGAGGCCTGTTCTCAAAGTTTGT 3249
Query 2524 AACCATGGTAAT---AAACCGTATTTA----------------------------------------------- 2547
|||||||..||| |||..|.|.||.
Sbjct 3250 AACCATGAAAATCAGAAAATGCAGTTGACAGAAGGGTCACGTCCACACCACAGTATCAATTGCAACTCCACCAG 3323
Query 2548 -------------------------------------------------------------------------- 2547
Sbjct 3324 GACTCCAGTCGCCAAGGAGCTTAATTATAATCTAGACACTCATGCGTCTACAGGGAGGATCAAGGCAGTTGAGA 3397
Query 2548 -------------------------------------------------------------------------- 2547
Sbjct 3398 AGGAAGCCTGTAATGCAGAAAGCAACAAAAAAAAGGAAATGGAACTTCTTGGCTCTGTTGCTAAAAGCGAATCA 3471
Query 2548 ------------------------------------------ 2547
Sbjct 3472 GTTCCTGAAGTTGAAGCCCTGCTGGCAAGATTACGAGCTTTA 3513
