Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04249
- Subject:
- XM_011245123.2
- Aligned Length:
- 3487
- Identities:
- 2211
- Gaps:
- 947
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGAGAGGCACCGGGCGCGCGCTCTCGGCCGGGACAGCAAGTCGTCGCGGAGGAAGGGCTTGCAGTCCGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCCCGCTGGCCCCTACGAGCCCGGGGAGAAGCGACCCAAGTTGCTGGACAAATTTGCCAGTATAAGAATTCCAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAGCAAGAAAGAGAGACCTCCCCTTCCCCACCTGAAGACTGTGTCTGGGATCAGTGACAGCTCATCACTGTCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCAGAGACAATGGAAAACAACCCAAAGGCGCTGCCAGAGAGTGAAGTCTTGAAGCTTTTTGAGAAGATGATGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AGATATGAATTTAAATGAAGATAAAAAGGCACCATTGCGGGAAAAAGACTTCGGTATCAAAAAAGAAATGGTGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGCAGTACATTAATACTGCTTCTAAGACAGGAAGTCTTAGAAGTAGCCGACAGATCTCACCTCAGGAATTTCTC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CATGAGCTGAAAATGGGTTACACAGACGAGAGACTTTTCACGTATCTGGAGTCACTCCGAGTATCATTGACCAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCATCCTGTGAGTTGGGTGCAAAGCTTTGGACACGAGGGACTCGGATTATTGCTGGACATTTTGGAAAAACTAA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTAATGGGCAAATCCAAGAAAAAGTTGTGAAGAAGACTCAGCACAAAGTCATCCAGTGTCTGAGAGCCCTGATG 666
Query 1 ---------------------------ATGAGTGAGGAGAGGAGCCTTTCCTTATTGGCCAAAGCCGTGGATCC 47
||||||||..|||||||.||||||||.|||||.||||||.|||||||
Sbjct 667 AACACACAGTATGGCTTAGAAAGGATTATGAGTGACAAGAGGAGTCTTTCCTTGTTGGCAAAAGCCATGGATCC 740
Query 48 CAGACACCCCAATATGATGACAGATGTGGTTAAACTTCTCTCTGCGGTATGCATTGTAGGGGAAGAAAGCATCC 121
|||.||.|||..|||||||.||||.|||||.||.|||||.|||||.||.||||||||.||.||.||||||||||
Sbjct 741 CAGGCAGCCCGCTATGATGGCAGACGTGGTGAAGCTTCTGTCTGCAGTGTGCATTGTCGGCGAGGAAAGCATCC 814
Query 122 TTGAAGAAGTTTTAGAAGCTTTAACTTCAGCTGGTGAAGAAAAAAAAATTGACAGATTTTTTTGTATTGTGGAA 195
||||||||||.||||||||.||.|||||||||||.|||||||.|||.||||||||||||||||..|||||||||
Sbjct 815 TTGAAGAAGTGTTAGAAGCCTTGACTTCAGCTGGAGAAGAAAGAAAGATTGACAGATTTTTTTCCATTGTGGAA 888
Query 196 GGCCTCCGGCACAATTCAGTTCAACTGCAAGTAGCTTGTATGCAGCTCATCAATGCCCTGGTTACATCTCCTGA 269
|||||||||||.||.|||||..|.||||||||.|||||||||||||||||.|||||.||.||||||||||||||
Sbjct 889 GGCCTCCGGCATAACTCAGTGAACCTGCAAGTTGCTTGTATGCAGCTCATAAATGCTCTCGTTACATCTCCTGA 962
Query 270 TGATTTGGATTTCAGGCTTCACATCAGAAATGAATTTATGCGTTGTGGATTGAAAGAGATATTGCCAAATTTAA 343
|||||||||.||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 963 TGATTTGGACTTCAGGCTTCACCTCAGAAATGAATTTATGCGTTGTGGATTGAAAGAGATATTGCCAAACTTAA 1036
Query 344 AATGCATTAAGAATGATGGCCTGGATATCCAACTTAAAGTCTTTGATGAGCATAAAGAAGAAGATTTGTTTGAG 417
|..|||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||||||||..||||
Sbjct 1037 AGGGCATTAAGAATGATGGCCTGGATATACAACTTAAAGTCTTTGATGAGCACAAAGAAGAAGATTTGAGTGAG 1110
Query 418 TTATCCCATCGCCTTGAAGATATTAGAGCTGAACTTGATGAAGCATATGATGTTTACAACATGGTGTGGAGCAC 491
||.|.|||||||||||||||.|||||||||||||||||||||||||.|||||||||||.||||.|.|||..|||
Sbjct 1111 TTTTTCCATCGCCTTGAAGACATTAGAGCTGAACTTGATGAAGCATCTGATGTTTACAGCATGTTATGGGACAC 1184
Query 492 AGTTAAAGAAACTAGAGCAGAGGGATATTTTATTTCTATTCTTCAGCATCTTTTGCTGATTCGAAATGATTATT 565
||||||.||||||.|||||||||||.|||||.|||||||||||||||||||..||||.|||||.||||||..||
Sbjct 1185 AGTTAAGGAAACTCGAGCAGAGGGACATTTTCTTTCTATTCTTCAGCATCTCCTGCTCATTCGCAATGATCGTT 1258
Query 566 TTATAAGGCAACAATACTTCAAATTAATTGATGAGTGTGTATCCCAGATTGTATTGCATAGAGATGGAATGGAT 639
|||||||..|.||.||.|||||||||||||||||||||||.||.|||||||||||.|||||||||||||.|||.
Sbjct 1259 TTATAAGAGAGCAGTATTTCAAATTAATTGATGAGTGTGTGTCACAGATTGTATTACATAGAGATGGAACGGAC 1332
Query 640 CCAGACTTCACATATCGAAAAAGACTAGATTTAGATTTAACCCAGTTTGTAGACATTTGCATAGATCAAGCAAA 713
||.|||||||||||..||||||||||||||||.||.||||..|||||||||||..|||||||||||||.||.||
Sbjct 1333 CCTGACTTCACATACAGAAAAAGACTAGATTTGGACTTAAGTCAGTTTGTAGATGTTTGCATAGATCAGGCCAA 1406
Query 714 ACTAGAAGAGTTTGAAGAGAAAGCATCAGAACTTTACAAGAAATTTGAAAAAGAGTTTACCGACCACCAAGAAA 787
||||||.||||..||||||||||||||.||||.||.||||||||||||||||||||.|||.|||||||||||||
Sbjct 1407 ACTAGATGAGTGGGAAGAGAAAGCATCCGAACATTGCAAGAAATTTGAAAAAGAGTGTACTGACCACCAAGAAA 1480
Query 788 CTCAGGCTGAATTGCAGAAAAAAGAGGCAAAGATTAATGAGCTTCAAGCAGAGCTACAAGCTTTTAAGTCTCAG 861
|.||||||.||||||||||||.|||||||||||||||||||||||||||||||.|||||||||||||.||.|||
Sbjct 1481 CCCAGGCTCAATTGCAGAAAAGAGAGGCAAAGATTAATGAGCTTCAAGCAGAGTTACAAGCTTTTAAATCCCAG 1554
Query 862 TTTGGTGCCTTGCCAGCTGATTGTAATATTCCTTTGCCTCCCTCTAAAGAAGGTGGAACTGGCCACTCAGCACT 935
|||||||||||||||.|||.|...||.||||||||||..||.||...||||||||.|.||||||..|||||.||
Sbjct 1555 TTTGGTGCCTTGCCACCTGGTACAAAAATTCCTTTGCAACCTTCAGTAGAAGGTGAAGCTGGCCCTTCAGCCCT 1628
Query 936 TCCTCCTCCGCCTCCACTGCCTTCTGGTGGAGGGGTGCCGCCT------CCACCTCCTCCCCCACCACCTCCTC 1003
|||||||.|.||.||| ||..|| .|||||||.||||||||| ||.||.|||||.||||||||.||.|
Sbjct 1629 TCCTCCTGCCCCACCA--GCACTC-AGTGGAGGAGTGCCGCCTCCCCCACCGCCCCCTCCTCCACCACCCCCAC 1699
Query 1004 CACTTCCAGGAATGCGGATGCCATTCAGTGGTCCTGTGCCTCCACCACCTCCCCTGGGATTCCTTGGAGGACAA 1077
||||.||||||||||..||||||||..||||.|||||.||.|||||||||||.|||||||||||.||.||.|||
Sbjct 1700 CACTCCCAGGAATGCCAATGCCATTTGGTGGCCCTGTACCACCACCACCTCCTCTGGGATTCCTGGGTGGGCAA 1773
Query 1078 AATTCTCCTCCTCTACCAATCCTGCCATTTGGGTTGAAACCAAAGAAAGAATTTAAACCTGAAATCAGCATGAG 1151
|..|||..||| |..||.||||||||||||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct 1774 AGCTCTATTCC---ATTAAACCTGCCATTTGGTTTGAAACCAAAGAAAGAATTTAAGCCTGAAATCAGCATGAG 1844
Query 1152 AAGATTGAATTGGTTAAAGATCAGACCTCATGAAATGACTGAAAACTGTTTCTGGATAAAAGTAAATGAAAATA 1225
||||||||||||||||||||||.||||..||||||||.||||.|||||.||||||||.||||||||||||||||
Sbjct 1845 AAGATTGAATTGGTTAAAGATCGGACCAAATGAAATGTCTGAGAACTGCTTCTGGATCAAAGTAAATGAAAATA 1918
Query 1226 AGTATGAAAACGTGGATTTGCTTTGTAAACTTGAGAATACATTTTGTTGCCAACAAAAAGAGAGAAGAGAAGAG 1299
||||||||||...||||||||||||||||||||||||.||.||||||||||||.|||||||||.||| |||.|.
Sbjct 1919 AGTATGAAAATAGGGATTTGCTTTGTAAACTTGAGAACACTTTTTGTTGCCAAGAAAAAGAGAAAAG-GAATAC 1991
Query 1300 GAA-GATATTGAAGAGAAGAAATCGATTAAGAAAAAAATTAAAGAACTTAAGTTTTTAGATTCTAAAATTGCCC 1372
.|| ||..||||.|||||||||...||||||||.|.|||.||.||||||||.|||.|||||.||||||||||.|
Sbjct 1992 AAATGACTTTGATGAGAAGAAAGTTATTAAGAAGAGAATGAAGGAACTTAAATTTCTAGATCCTAAAATTGCTC 2065
Query 1373 AGAACCTTTCAATCTTCCTGAGCTCTTTTCGGGTGCCATATGAGGAAATCAGAATGATGATATTGGAAGTAGAT 1446
|||||||||||||||||||||||||.||.|||||||||||||||.|||||||.|.|||||||||||||||.|||
Sbjct 2066 AGAACCTTTCAATCTTCCTGAGCTCCTTCCGGGTGCCATATGAGAAAATCAGGACGATGATATTGGAAGTGGAT 2139
Query 1447 GAAACACGGTTGGCAGAGTCTATGATTCAGAACTTAATAAAGCATCTTCCTGATCAAGAGCAATTAAATTCATT 1520
|||||||.||||.|||||||.|||||||||||||||||||||||.|||||||||.|.|||||.||.||.|||||
Sbjct 2140 GAAACACAGTTGTCAGAGTCCATGATTCAGAACTTAATAAAGCACCTTCCTGATGAGGAGCAGTTGAAGTCATT 2213
Query 1521 GTCTCAGTTCAAGAGTGAATATAGCAACTTATGTGAACCTGAGCAGTTTGTGGTTGTGATGAGCAATGTGAAGA 1594
|||.|||||.|..|||||.||||.||..||.|||||.|||||||||||.|..||||||||||||||||||||||
Sbjct 2214 GTCCCAGTTTAGAAGTGACTATAACAGTTTGTGTGAGCCTGAGCAGTTCGCTGTTGTGATGAGCAATGTGAAGA 2287
Query 1595 GACTACGGCCACGGCTCAGTGCTATTCTCTTTAAGCTTCAGTTTGAAGAGCAGGTGAACAACATCAAACCTGAC 1668
||||.|||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 2288 GACTCCGGCCACGGCTCAGTGCTATTCTCTTTAAGCTTCAATTTGAAGAGCAGGTGAACAACATCAAACCTGAC 2361
Query 1669 ATCATGGCTGTCAGTACTGCCTGCGAAGAGATAAAGAAGAGCAAAAGCTTTAGCAAGTTGCTGGAACTTGTATT 1742
||||||||||||||||||||||||||.|||||.||||||||||||.|||||||||||||||||||||||||.||
Sbjct 2362 ATCATGGCTGTCAGTACTGCCTGCGAGGAGATCAAGAAGAGCAAAGGCTTTAGCAAGTTGCTGGAACTTGTGTT 2435
Query 1743 GCTAATGGGAAACTACATGAATGCTGGCTCCCGGAATGCTCAAACCTTCGGATTTAACCTTAGCTCTCTCTGTA 1816
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 2436 GCTAATGGGAAACTACATGAATGCTGGCTCCCGGAATGCTCAAACCTTCGGATTTGACCTTAGCTCTCTCTGTA 2509
Query 1817 AACTAAAGGACACAAAATCAGCAGATCAGAAAACAACGCTACTTCATTTCCTGGTAGAAATATGTGAAGAGAAG 1890
||||.|||||.||||||||.||||||||||||||.||.||.||.||||||||||||||..||||||||||.|||
Sbjct 2510 AACTGAAGGATACAAAATCTGCAGATCAGAAAACCACACTCCTCCATTTCCTGGTAGATGTATGTGAAGAAAAG 2583
Query 1891 TACCCTGATATACTGAATTTTGTGGATGATTTGGAACCTTTAGACAAAGCTAGTAAAGTCTCTGTAGAAACGCT 1964
.|..||||.||.||..|.||||||||.|||||||.||.|||||||||||||||.|.||||||||||||||.|||
Sbjct 2584 CATGCTGACATCCTTCACTTTGTGGACGATTTGGCACATTTAGACAAAGCTAGCAGAGTCTCTGTAGAAATGCT 2657
Query 1965 GGAAAAGAATTTGAGGCAGATGGGAAGGCAGCTTCAACAGCTTGAGAAGGAATTGGAAACCTTTCCCCCTCCTG 2038
|||||||||..|||.||||||||||||||||||||||||||||||||||.|.||||||||||||||||||||||
Sbjct 2658 GGAAAAGAACGTGAAGCAGATGGGAAGGCAGCTTCAACAGCTTGAGAAGAATTTGGAAACCTTTCCCCCTCCTG 2731
Query 2039 AGGACTTGCATGACAAGTTTGTGACAAAGATGTCCAGATTTGTTATCAGTGCAAAAGAACAATATGAGACACTT 2112
||||||||||||||||||||||||.||||||||||||.||.|||||||||||.||.||.||.|||||.|.|||.
Sbjct 2732 AGGACTTGCATGACAAGTTTGTGATAAAGATGTCCAGCTTCGTTATCAGTGCGAACGAGCAGTATGAAAAACTC 2805
Query 2113 TCGAAGTTACACGAAAACATGGAAAAGTTATACCAGAGTATAATAGGATACTATGCCATTGATGTGAAGAAGGT 2186
||.|...|||..|..|.||||..|.|.||.||||||||||||||.||.||||||||..|.||..||||||||||
Sbjct 2806 TCCACACTACTGGGCAGCATGACACAATTGTACCAGAGTATAATGGGCTACTATGCTGTCGACATGAAGAAGGT 2879
Query 2187 GTCTGTGGAAGACTTTCTTACTGACCTGAATAACTTCAGAACCACATTCATGCAAGCAATAAAGGAGAATATCA 2260
.||.||||||||.|||.|||.|||.|||||.|||||||||||..||||.||||.||||.|||||||.||.||||
Sbjct 2880 TTCCGTGGAAGAGTTTTTTAATGATCTGAACAACTTCAGAACTTCATTTATGCTAGCATTAAAGGAAAACATCA 2953
Query 2261 AAAAAAGAGAAGCAGAGGAAAAAGAAAAACGTGTCAGAATAGCTAAAGAATTAGCAGAGCGAGAAAGACTCGAA 2334
|||||.|||||||||..|||||.||.|||||||.|||.|||||.|||||...|||||||..|||..||||.|||
Sbjct 2954 AAAAACGAGAAGCAGCAGAAAAGGAGAAACGTGCCAGGATAGCGAAAGAGCGAGCAGAGAAAGAGCGACTTGAA 3027
Query 2335 CGCCAACAAAAGAAAAAGCGTTTATTAGAAATGAAGACTGAGGGTGATGAGACAGGAGTGATGGATAATCTGCT 2408
|||||.|||.||||||||||.|||.||||||||||.||||||||.||||||||||||||||||||||.||||||
Sbjct 3028 CGCCAGCAAGAGAAAAAGCGCTTACTAGAAATGAAAACTGAGGGAGATGAGACAGGAGTGATGGATAGTCTGCT 3101
Query 2409 GGAGGCCTTGCAGTCCGGGGCTGCCTTCCGCGACAGAAGAAAAAGGACACCGATGCCAAAAGATGTTCGGCAGA 2482
|||||||||||||||.|||||||||||||||||||||||||||||||||||.|.||..||||||.|||||||||
Sbjct 3102 GGAGGCCTTGCAGTCAGGGGCTGCCTTCCGCGACAGAAGAAAAAGGACACCAAAGCTGAAAGATATTCGGCAGA 3175
Query 2483 GTCTCAGTCCAATGTCTCAGAGGCCTGTTCTGAAAGTTTGTAACCATGGTAAT---AAACCGTATTTA------ 2547
|||||||.||.||||||||||||||||||||.||||||||||||||||..||| |||..|.|.||.
Sbjct 3176 GTCTCAGCCCGATGTCTCAGAGGCCTGTTCTCAAAGTTTGTAACCATGAAAATCAGAAAATGCAGTTGACAGAA 3249
Query 2548 -------------------------------------------------------------------------- 2547
Sbjct 3250 GGGTCACGTCCACACCACAGTATCAATTGCAACTCCACCAGGACTCCAGTCGCCAAGGAGCTTAATTATAATCT 3323
Query 2548 -------------------------------------------------------------------------- 2547
Sbjct 3324 AGACACTCATGCGTCTACAGGGAGGATCAAGGCAGTTGAGAAGGAAGCCTGTAATGCAGAAAGCAACAAAAAAA 3397
Query 2548 -------------------------------------------------------------------------- 2547
Sbjct 3398 AGGAAATGGAACTTCTTGGCTCTGTTGCTAAAAGCGAATCAGTTCCTGAAGTTGAAGCCCTGCTGGCAAGATTA 3471
Query 2548 --------- 2547
Sbjct 3472 CGAGCTTTA 3480
