Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04544
- Subject:
- XR_001751414.1
- Aligned Length:
- 5030
- Identities:
- 1128
- Gaps:
- 3902
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGGTAAAAGCTGCTTCCTGTTGGGGCATGAGTCCGGCGCGTGTCGGGTTTTGAGCTGCCGCGGTCCCGGGACT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAGCTCCTTGGGAGCAGACAGCTGTCCTCACTGGCAGAGGAGGAGCGCTCAGTAAATGCTCGCTGGACGAATAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ATGGCTAGATAAGATAAGGCAGCTCCAGCCCCTGGAAGGCCAGAGACTTGCCAGTGTCCCACTAGCGGGCTCTT 222
Query 1 --------------------------------------------------------------ATGGCGGAGGAG 12
||||||||||||
Sbjct 223 CGCAAGAATCCCCCCGGGCCCGCCGCAGCCAGGCGGCGGCCGGCAGAGGGCGCTGCTCGGGCATGGCGGAGGAG 296
Query 13 CGGCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGT 86
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CGGCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGT 370
Query 87 GCACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCG 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCG 444
Query 161 TGACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCC 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCC 518
Query 235 TCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATC 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATC 592
Query 309 GGCGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTG 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GGCGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTG 666
Query 383 AGGCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGG 456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGG 740
Query 457 CCTCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGG 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCTCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGG 814
Query 531 CCAGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCAC 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCAGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCAC 888
Query 605 GGCTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGT 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGCTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGT 962
Query 679 GAGACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGA 752
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GAGACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGA 1036
Query 753 GGATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGG 1110
Query 827 CTGAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTGAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCA 1184
Query 901 GATGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACAC------------------------- 949
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACACGTGAGTGGGGCTGGGAGGCACTCTG 1258
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1259 CTCCACTCGAGCTGGTGCCTACGGAAGGGGGTGTGGTCGACGGAAAAACTTCTGTCTTAAGGCTTCTGTGGCTC 1332
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1333 ATACAGAGCAGCTACCTTGCTCAGTGGATAAGCCCCAACCCCCTTGTTGTTTCACAGTAGTTCCCCAGCCTGTC 1406
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1407 AGGCCCAGAAGTTTCTTCCTTCTGGTGGGAGGCTGATGCTTTCTGTCCTCCCTGCACGGCCACAGACACATTCC 1480
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1481 CTGCCCGCCGCCGCCTCTGACAGCAGGGACTGTCCAGTCTGGCATGGAAGACTGCGGCGCTCGGTAGCATGGCA 1554
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1555 CACAGGAAGATCCGCCACTTTTTCCCTCGGGATCCTCTGCCATGCCACGTGTGATCAGCCAGTTGTTAAGAGAA 1628
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1629 TATGTTGTTCCATGCCAGGCAGATCTCATGAGGATTGTAATATGCTAGCTGTGGGCTGTGCCAAGCTGGGCTGG 1702
Query 950 ---------------------------------------------------------GAACAGGGGAGCTCTAC 966
|||||||||||||||||
Sbjct 1703 ACAGATGCCTTGCCAAAGAACCGTAGTGACAACTATCGATTGTCCTTTTGCTTTCAGGAACAGGGGAGCTCTAC 1776
Query 967 ACCTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGA 1040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ACCTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGA 1850
Query 1041 ATACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGG 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGG 1924
Query 1115 AGAAAGGGAAGAGC------------------------------------------------------------ 1128
||||||||||||||
Sbjct 1925 AGAAAGGGAAGAGCTGACATGTGTACGTATATGTATATGCAACACCTGTGAGACCCCCATTCAGGTCAAGGAAA 1998
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1999 ACCATTGCCTGCACCCCAAGGGCCCCATATTTGCCCCTCCCCATCACAGTCCTGCCCTTCACCCTCAAGCACGG 2072
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2073 TCCTAAACTTGTCTGCACTTTAGAAACACCTGGAGAGCATTGAAAACTCTGCTGCCTAAGGTCAGCATCAATCA 2146
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2147 AAACAATGAAATCAATGAAACAATGAAACCAGAGCTTCTAGGTGTGTGGCCTGGATAGTGGTAGATTCAAAGCT 2220
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2221 CCACCCACCTCATCCCAGGTACATTTGATGTGCAGCTGAGATTGGGGCACATTCCAGGTCATCGTCTTCTGTCA 2294
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2295 GTCATTTCCCTGCTTTCGTTTGAATTTTACCATTCTTGTATGCAGCCTTATACGACATAGTTGTGTTTGCTTTT 2368
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2369 GAGTGTTAGATAAATGGAATCCTGTGTATGTGCTTTTGTGTCGTTTTTGTCACTCAGCATTGTATAATCCATCC 2442
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2443 TTGTTGGGTCCTGGAGTTCATTTTTAATGCTATATGGTGTTCTGTTGTATGAATAATACCTCAAGTGATACAGC 2516
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2517 CTTGTTGATGGTCATTTTTATTGTTTCTGATTTTGGTCATTCCACATAATTCTTTGTGCAGTCTTCTGCACATG 2590
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2591 TGCACAAGTTCCTTTGCAGAACATTGAGTTGAATTGCTAAGTCAGGAGATACCTTTAATTTTACTAGATAACTG 2664
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2665 TTGCCCCCAGCAGGGTGGGGTCTACTGTGGCTAAAATGTCAGGTAGATGCACACTGGTTTTAATTGGCATTTCC 2738
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2739 CTGGATACTGATGAGGTTGAGTAGCTTTTCATTTGTTTTGGATGGCTGGGCATGGTGGCTCACACCTGTAGTCC 2812
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2813 CAGCACTTTGGGAGGCTAAGCAGGGAGATTGCTTGAGGCGAAGAGTTCATATGTTTATTGGCCACTTGGAGTTT 2886
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2887 TTCTGTTGTCAAGTGCCTGTTCAAGTTTTCTGGCCTTTTAAAATGTTCTGTATTTTCCTTAGTGATTTTTCTTT 2960
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2961 TGGATATTTCAGATACAAGTCTTTTGAGAGTTAGTATTCAGAGTATCTTCTGCTACAATGTAGTTTGTTTCAGT 3034
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3035 CTCTCTTGGTATTACCAATTTTAATACTTAGGTGATGCTTACTCCATGCCAGGTAAGGCTCAAAGTGCTTTACA 3108
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3109 AGTATCAACTTATTTTGATAAAATAAGCTTATCAGTAGTTTTCTTTATAGTTAAATTCTATTTGTGCATGTGTG 3182
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3183 TGTCTGTGGTTTAGCAAATGTTTCCCACCCATGGGGTCTTTTTTATTGTGGTAAAATATACTGAACATAAAATT 3256
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3257 TATGTTCAATAAAAAACAAAAATTGTTTTTAACCATTTTAAGTACATAGTTCAGTGACATTATATGCATTCACT 3330
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3331 GTTGTGCAACCGTCACCCCTATGCATTTCCAGAACTTTTTCATCATTCTATGCTGAAACTCTGTGCATTAAACA 3404
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3405 CTTAACTCGTCAGTCTCCCCTTCCCCAGCCCCAGGCAACCACAGTCCTAACCTTCTGTTCCTATGATACTGTAA 3478
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3479 GTGCCTCATGTAAGTGAAATCCCATAGTATTTGTCTTTTTATGACTGGCTTATCTCACTTAGCAGCATGTCCTC 3552
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3553 CAAGTTCATCCATGATGTAGCTTATGTATCTAGACTTCCTGCCTTTTAAAGGCTAAGATTCTGTTGTATGTATA 3626
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3627 CACTGCGTTTTATTCATCCGTGCATTGGTGGATATCTGAGTTGTTCACTACAGTCAATAATGTTGCTGGGAACA 3700
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3701 TGGGTGTACAACTCTCTTGAGTCTCTGCTTTCAGTTCTTTTGGATATATACCCAGAGTGGAATTGCTGGATTGT 3774
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3775 GTGGTAATTCTAAATTTTTTTGAGGAACTGCCCTGTTTCCCACAGAGGCTGCATCATTTTACATCCCCACTGGA 3848
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3849 AGTGCACACAAATCCTAATTTCTCCACATCCGCGTCCACACTTGTTTTCTATTTCTGGTTAACAGCCATCCTAA 3922
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3923 TGGGTGTGAAGTGGTATTTCATTGTGGGTTTTTTTTTTTTTTTTTGGACAGGGTCTCTCTGTTGTCCAGGCTGG 3996
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3997 AGTACAGCCTCCACCTTCTGGGCTTAAGCCATCCTCCCGGGTAGCTGGGGCTACAGGCACGTGCCACCACATCT 4070
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4071 GGCTAGTTTTTTGTATTTTTAGTAGAGATGGGGTTGTTGCATATTGCCCAGGCTGGTCTCAAACTGCTGGGCTG 4144
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4145 AAGCGATCCACTTGCCTTAGCCTCCCAAAGTACTAGGATTATAGGCATGAGCCATCATGCCTGGCCAAGCCATT 4218
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4219 TTTTAAAATGGACAAAAGTCAACAAAGACGACAGAAGGATAGCAAGTGAGCATATGAGAAGATGCTCTACATCA 4292
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4293 TTAGTCATTAGGGAGTTGTAAATGAAAACCATAGTGAGACACCACTCCATACACAGAATAACTAGAATTACATA 4366
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4367 AAGGCTGAACATACCAACTGTTGGTGAAGATGTGGAGAAACTGGAACCTTCATACATTACTGGTAGGAATGTAA 4440
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4441 AATGGTACAACTGCTTTGGAAAACAGTTTGGCATTTCTTCTTTTTTAAGATGGAGTCTTGCTCTGTTGCCCAGG 4514
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4515 CTAGAGTGCAGTGGTGCAATCTCAGCTCACTGCCACTTCCGCCTCCTGAGTTCAAGGAATTCTCCTTCCTCAGC 4588
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4589 CTCCTGAATAGCTGAGATTACAGGTGTGTGCCACCACAGCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGT 4662
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4663 TTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTTAGCCTCCCAAAGTGCTGG 4736
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4737 GATTACAGGCGTGAGCCACCATGCCCGGCCCAGTTTGGCATTTCTTAAAAAGTTAAGTGTACACATACCATAGA 4810
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4811 TGTGATCCAGCCATTTCACTCCTAGGTATTTATCCAGAAAAAAAAATATATCCATACAAAGACTTGTACATGAA 4884
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4885 TGTTTATAACAGCCTTGTTTTTAATAGCCAAAAACTGGAGAAAAGCCAAATGTGAAAAATAAACCTAACAGGCG 4958
Query 1129 ------------------------------------------------------------------------ 1128
Sbjct 4959 AATAAACTGGTATATCAACACCATGGAATACTAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5030
