Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04544
Subject:
XR_001751415.1
Aligned Length:
4954
Identities:
1128
Gaps:
3826

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATCCGTGGAAGGTAAAAGCTGCTTCCTGTTGGGGCATGAGTCCGGCGCGTGTCGGGTTTTGAGCTGCCGCGGTC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCGGGACTGAGATAAGGCAGCTCCAGCCCCTGGAAGGCCAGAGACTTGCCAGTGTCCCACTAGCGGGCTCTTCG  148

Query    1  ------------------------------------------------------------ATGGCGGAGGAGCG  14
                                                                        ||||||||||||||
Sbjct  149  CAAGAATCCCCCCGGGCCCGCCGCAGCCAGGCGGCGGCCGGCAGAGGGCGCTGCTCGGGCATGGCGGAGGAGCG  222

Query   15  GCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGTGC  88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTGGGCTCCGGACGCGGGCGCCAGGTGC  296

Query   89  ACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCGTG  162
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGCGAGCTGGAGCTACACCGCTTTCGTG  370

Query  163  ACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCCTC  236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGGGCCGCTGCAAGGACGCGTGGGCCTC  444

Query  237  GGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATCGG  310
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTACTGCAGGTCTGGGCGGCCGAATCGG  518

Query  311  CGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTGAG  384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGAAGGGGAAGACGATCCGGCCGGTGAG  592

Query  385  GCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGGCC  458
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGAGCCCGCGGGCGCCCTTCTACCGGCC  666

Query  459  TCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGGCC  532
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCACGCGTTGCTGCTGGACGCTGCTGGCC  740

Query  533  AGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCACGG  606
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGACCCTGGAGGCAGAGCTGGAGCCACGG  814

Query  607  CTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGTGA  680
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGGGCTGGCATTCTGTGTGTGTGAGTGA  888

Query  681  GACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGAGG  754
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCCCTGCCCACCAGGAACCTGGCAGAGG  962

Query  755  ATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGGCT  828
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  ATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTCTCAGGTGAAGAGAACGGGTGGGGCT  1036

Query  829  GAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGA  902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  GAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCATTACTGGATCTCCCCATGGGCTCAGA  1110

Query  903  TGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACAC---------------------------  949
            |||||||||||||||||||||||||||||||||||||||||||||||                           
Sbjct 1111  TGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACACGTGAGTGGGGCTGGGAGGCACTCTGCT  1184

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1185  CCACTCGAGCTGGTGCCTACGGAAGGGGGTGTGGTCGACGGAAAAACTTCTGTCTTAAGGCTTCTGTGGCTCAT  1258

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1259  ACAGAGCAGCTACCTTGCTCAGTGGATAAGCCCCAACCCCCTTGTTGTTTCACAGTAGTTCCCCAGCCTGTCAG  1332

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1333  GCCCAGAAGTTTCTTCCTTCTGGTGGGAGGCTGATGCTTTCTGTCCTCCCTGCACGGCCACAGACACATTCCCT  1406

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1407  GCCCGCCGCCGCCTCTGACAGCAGGGACTGTCCAGTCTGGCATGGAAGACTGCGGCGCTCGGTAGCATGGCACA  1480

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1481  CAGGAAGATCCGCCACTTTTTCCCTCGGGATCCTCTGCCATGCCACGTGTGATCAGCCAGTTGTTAAGAGAATA  1554

Query  950  --------------------------------------------------------------------------  949
                                                                                      
Sbjct 1555  TGTTGTTCCATGCCAGGCAGATCTCATGAGGATTGTAATATGCTAGCTGTGGGCTGTGCCAAGCTGGGCTGGAC  1628

Query  950  -------------------------------------------------------GAACAGGGGAGCTCTACAC  968
                                                                   |||||||||||||||||||
Sbjct 1629  AGATGCCTTGCCAAAGAACCGTAGTGACAACTATCGATTGTCCTTTTGCTTTCAGGAACAGGGGAGCTCTACAC  1702

Query  969  CTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGAAT  1042
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  CTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGCTTGGATCGGCCTCGCCGTGTGGAAT  1776

Query 1043  ACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGGAG  1116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  ACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTGGAACACCTACGTGTATGCTGTGGAG  1850

Query 1117  AAAGGGAAGAGC--------------------------------------------------------------  1128
            ||||||||||||                                                              
Sbjct 1851  AAAGGGAAGAGCTGACATGTGTACGTATATGTATATGCAACACCTGTGAGACCCCCATTCAGGTCAAGGAAAAC  1924

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 1925  CATTGCCTGCACCCCAAGGGCCCCATATTTGCCCCTCCCCATCACAGTCCTGCCCTTCACCCTCAAGCACGGTC  1998

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 1999  CTAAACTTGTCTGCACTTTAGAAACACCTGGAGAGCATTGAAAACTCTGCTGCCTAAGGTCAGCATCAATCAAA  2072

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2073  ACAATGAAATCAATGAAACAATGAAACCAGAGCTTCTAGGTGTGTGGCCTGGATAGTGGTAGATTCAAAGCTCC  2146

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2147  ACCCACCTCATCCCAGGTACATTTGATGTGCAGCTGAGATTGGGGCACATTCCAGGTCATCGTCTTCTGTCAGT  2220

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2221  CATTTCCCTGCTTTCGTTTGAATTTTACCATTCTTGTATGCAGCCTTATACGACATAGTTGTGTTTGCTTTTGA  2294

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2295  GTGTTAGATAAATGGAATCCTGTGTATGTGCTTTTGTGTCGTTTTTGTCACTCAGCATTGTATAATCCATCCTT  2368

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2369  GTTGGGTCCTGGAGTTCATTTTTAATGCTATATGGTGTTCTGTTGTATGAATAATACCTCAAGTGATACAGCCT  2442

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2443  TGTTGATGGTCATTTTTATTGTTTCTGATTTTGGTCATTCCACATAATTCTTTGTGCAGTCTTCTGCACATGTG  2516

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2517  CACAAGTTCCTTTGCAGAACATTGAGTTGAATTGCTAAGTCAGGAGATACCTTTAATTTTACTAGATAACTGTT  2590

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2591  GCCCCCAGCAGGGTGGGGTCTACTGTGGCTAAAATGTCAGGTAGATGCACACTGGTTTTAATTGGCATTTCCCT  2664

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2665  GGATACTGATGAGGTTGAGTAGCTTTTCATTTGTTTTGGATGGCTGGGCATGGTGGCTCACACCTGTAGTCCCA  2738

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2739  GCACTTTGGGAGGCTAAGCAGGGAGATTGCTTGAGGCGAAGAGTTCATATGTTTATTGGCCACTTGGAGTTTTT  2812

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2813  CTGTTGTCAAGTGCCTGTTCAAGTTTTCTGGCCTTTTAAAATGTTCTGTATTTTCCTTAGTGATTTTTCTTTTG  2886

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2887  GATATTTCAGATACAAGTCTTTTGAGAGTTAGTATTCAGAGTATCTTCTGCTACAATGTAGTTTGTTTCAGTCT  2960

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 2961  CTCTTGGTATTACCAATTTTAATACTTAGGTGATGCTTACTCCATGCCAGGTAAGGCTCAAAGTGCTTTACAAG  3034

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3035  TATCAACTTATTTTGATAAAATAAGCTTATCAGTAGTTTTCTTTATAGTTAAATTCTATTTGTGCATGTGTGTG  3108

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3109  TCTGTGGTTTAGCAAATGTTTCCCACCCATGGGGTCTTTTTTATTGTGGTAAAATATACTGAACATAAAATTTA  3182

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3183  TGTTCAATAAAAAACAAAAATTGTTTTTAACCATTTTAAGTACATAGTTCAGTGACATTATATGCATTCACTGT  3256

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3257  TGTGCAACCGTCACCCCTATGCATTTCCAGAACTTTTTCATCATTCTATGCTGAAACTCTGTGCATTAAACACT  3330

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3331  TAACTCGTCAGTCTCCCCTTCCCCAGCCCCAGGCAACCACAGTCCTAACCTTCTGTTCCTATGATACTGTAAGT  3404

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3405  GCCTCATGTAAGTGAAATCCCATAGTATTTGTCTTTTTATGACTGGCTTATCTCACTTAGCAGCATGTCCTCCA  3478

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3479  AGTTCATCCATGATGTAGCTTATGTATCTAGACTTCCTGCCTTTTAAAGGCTAAGATTCTGTTGTATGTATACA  3552

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3553  CTGCGTTTTATTCATCCGTGCATTGGTGGATATCTGAGTTGTTCACTACAGTCAATAATGTTGCTGGGAACATG  3626

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3627  GGTGTACAACTCTCTTGAGTCTCTGCTTTCAGTTCTTTTGGATATATACCCAGAGTGGAATTGCTGGATTGTGT  3700

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3701  GGTAATTCTAAATTTTTTTGAGGAACTGCCCTGTTTCCCACAGAGGCTGCATCATTTTACATCCCCACTGGAAG  3774

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3775  TGCACACAAATCCTAATTTCTCCACATCCGCGTCCACACTTGTTTTCTATTTCTGGTTAACAGCCATCCTAATG  3848

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3849  GGTGTGAAGTGGTATTTCATTGTGGGTTTTTTTTTTTTTTTTTGGACAGGGTCTCTCTGTTGTCCAGGCTGGAG  3922

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3923  TACAGCCTCCACCTTCTGGGCTTAAGCCATCCTCCCGGGTAGCTGGGGCTACAGGCACGTGCCACCACATCTGG  3996

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 3997  CTAGTTTTTTGTATTTTTAGTAGAGATGGGGTTGTTGCATATTGCCCAGGCTGGTCTCAAACTGCTGGGCTGAA  4070

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4071  GCGATCCACTTGCCTTAGCCTCCCAAAGTACTAGGATTATAGGCATGAGCCATCATGCCTGGCCAAGCCATTTT  4144

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4145  TTAAAATGGACAAAAGTCAACAAAGACGACAGAAGGATAGCAAGTGAGCATATGAGAAGATGCTCTACATCATT  4218

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4219  AGTCATTAGGGAGTTGTAAATGAAAACCATAGTGAGACACCACTCCATACACAGAATAACTAGAATTACATAAA  4292

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4293  GGCTGAACATACCAACTGTTGGTGAAGATGTGGAGAAACTGGAACCTTCATACATTACTGGTAGGAATGTAAAA  4366

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4367  TGGTACAACTGCTTTGGAAAACAGTTTGGCATTTCTTCTTTTTTAAGATGGAGTCTTGCTCTGTTGCCCAGGCT  4440

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4441  AGAGTGCAGTGGTGCAATCTCAGCTCACTGCCACTTCCGCCTCCTGAGTTCAAGGAATTCTCCTTCCTCAGCCT  4514

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4515  CCTGAATAGCTGAGATTACAGGTGTGTGCCACCACAGCCAGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTT  4588

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4589  CACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCCACCTTAGCCTCCCAAAGTGCTGGGA  4662

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4663  TTACAGGCGTGAGCCACCATGCCCGGCCCAGTTTGGCATTTCTTAAAAAGTTAAGTGTACACATACCATAGATG  4736

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4737  TGATCCAGCCATTTCACTCCTAGGTATTTATCCAGAAAAAAAAATATATCCATACAAAGACTTGTACATGAATG  4810

Query 1129  --------------------------------------------------------------------------  1128
                                                                                      
Sbjct 4811  TTTATAACAGCCTTGTTTTTAATAGCCAAAAACTGGAGAAAAGCCAAATGTGAAAAATAAACCTAACAGGCGAA  4884

Query 1129  ----------------------------------------------------------------------  1128
                                                                                  
Sbjct 4885  TAAACTGGTATATCAACACCATGGAATACTAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  4954

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