Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04544
- Subject:
- XR_001751416.1
- Aligned Length:
- 5053
- Identities:
- 1128
- Gaps:
- 3925
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCTTTCCGGAGGCGGCCGCTCTGCGCCTCGGCGTTTCCTCCAAGGCTGCCCACCAGAAGGACCTGCCCGAGAGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTAGAGGGCATAGGGTCAAGATCAAGCTCCTTGGGAGCAGACAGCTGTCCTCACTGGCAGAGGAGGAGCGCTCA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTAAATGCTCGCTGGACGAATAAATGGCTAGATAAGATAAGGCAGCTCCAGCCCCTGGAAGGCCAGAGACTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGTGTCCCACTAGCGGGCTCTTCGCAAGAATCCCCCCGGGCCCGCCGCAGCCAGGCGGCGGCCGGCAGAGGGC 296
Query 1 -----------ATGGCGGAGGAGCGGCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTG 63
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCTGCTCGGGCATGGCGGAGGAGCGGCCGGGGGCCTGGTTCGGCTTCGGTTTCTGCGGCTTCGGGCAGGAGCTG 370
Query 64 GGCTCCGGACGCGGGCGCCAGGTGCACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGC 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCTCCGGACGCGGGCGCCAGGTGCACAGCCCCAGTCCGCTGCGGGCGGGCGTCGACATCTGCCGCGTGAGCGC 444
Query 138 GAGCTGGAGCTACACCGCTTTCGTGACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGG 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAGCTGGAGCTACACCGCTTTCGTGACCCGTGGAGGCCGCTTGGAGCTGTCGGGCTCAGCCAGCGGCGCGGCGG 518
Query 212 GCCGCTGCAAGGACGCGTGGGCCTCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTA 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCCGCTGCAAGGACGCGTGGGCCTCGGAGGGGCTCCTCGCGGTGCTGCGCGCCGGGCCGGGGCCGGAGGCGTTA 592
Query 286 CTGCAGGTCTGGGCGGCCGAATCGGCGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGCAGGTCTGGGCGGCCGAATCGGCGCTGCGTGGGGAGCCATTGTGGGCCCAGAATGTGGTGCCCGAGGCCGA 666
Query 360 AGGGGAAGACGATCCGGCCGGTGAGGCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGA 433
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGGGGAAGACGATCCGGCCGGTGAGGCCCAGGCTGGGAGGCTACCCCTGCTGCCCTGCGCCCGTGCCTACGTGA 740
Query 434 GCCCGCGGGCGCCCTTCTACCGGCCTCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCAC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCCCGCGGGCGCCCTTCTACCGGCCTCTGGCTCCGGAGCTGCGGGCACGCCAGCTGGAGCTGGGCGCCGAGCAC 814
Query 508 GCGTTGCTGCTGGACGCTGCTGGCCAGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGAC 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCGTTGCTGCTGGACGCTGCTGGCCAGGTGTTCTCCTGGGGCGGGGGCAGGCATGGACAGCTGGGCCATGGGAC 888
Query 582 CCTGGAGGCAGAGCTGGAGCCACGGCTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGG 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCTGGAGGCAGAGCTGGAGCCACGGCTGTTGGAGGCGTTGCAGGGCCTAGTCATGGCTGAGGTGGCCGCGGGGG 962
Query 656 GCTGGCATTCTGTGTGTGTGAGTGAGACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCC 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCTGGCATTCTGTGTGTGTGAGTGAGACTGGGGATATTTATATCTGGGGCTGGAATGAATCAGGGCAGCTGGCC 1036
Query 730 CTGCCCACCAGGAACCTGGCAGAGGATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTC 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGCCCACCAGGAACCTGGCAGAGGATGGAGAGACTGTCGCAAGGGAAGCCACAGAACTGAATGAAGATGGTTC 1110
Query 804 TCAGGTGAAGAGAACGGGTGGGGCTGAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCAT 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCAGGTGAAGAGAACGGGTGGGGCTGAGGATGGAGCCCCTGCCCCCTTCATAGCTGTCCAGCCCTTCCCGGCAT 1184
Query 878 TACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACAC-- 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACTGGATCTCCCCATGGGCTCAGATGCAGTCAAGGCCAGCTGTGGATCCCGGCACACAGCTGTGGTGACACGT 1258
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1259 GAGTGGGGCTGGGAGGCACTCTGCTCCACTCGAGCTGGTGCCTACGGAAGGGGGTGTGGTCGACGGAAAAACTT 1332
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1333 CTGTCTTAAGGCTTCTGTGGCTCATACAGAGCAGCTACCTTGCTCAGTGGATAAGCCCCAACCCCCTTGTTGTT 1406
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1407 TCACAGTAGTTCCCCAGCCTGTCAGGCCCAGAAGTTTCTTCCTTCTGGTGGGAGGCTGATGCTTTCTGTCCTCC 1480
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1481 CTGCACGGCCACAGACACATTCCCTGCCCGCCGCCGCCTCTGACAGCAGGGACTGTCCAGTCTGGCATGGAAGA 1554
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1555 CTGCGGCGCTCGGTAGCATGGCACACAGGAAGATCCGCCACTTTTTCCCTCGGGATCCTCTGCCATGCCACGTG 1628
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1629 TGATCAGCCAGTTGTTAAGAGAATATGTTGTTCCATGCCAGGCAGATCTCATGAGGATTGTAATATGCTAGCTG 1702
Query 950 -------------------------------------------------------------------------- 949
Sbjct 1703 TGGGCTGTGCCAAGCTGGGCTGGACAGATGCCTTGCCAAAGAACCGTAGTGACAACTATCGATTGTCCTTTTGC 1776
Query 950 ------GAACAGGGGAGCTCTACACCTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGC 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TTTCAGGAACAGGGGAGCTCTACACCTGGGGCTGGGGTAAATATGGACAGCTGGGCCACGAGGACACCACCAGC 1850
Query 1018 TTGGATCGGCCTCGCCGTGTGGAATACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TTGGATCGGCCTCGCCGTGTGGAATACTTTGTAGATAAGCAACTCCAAGTAAAGGCTGTCACCTGTGGGCCGTG 1924
Query 1092 GAACACCTACGTGTATGCTGTGGAGAAAGGGAAGAGC------------------------------------- 1128
|||||||||||||||||||||||||||||||||||||
Sbjct 1925 GAACACCTACGTGTATGCTGTGGAGAAAGGGAAGAGCTGACATGTGTACGTATATGTATATGCAACACCTGTGA 1998
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 1999 GACCCCCATTCAGGTCAAGGAAAACCATTGCCTGCACCCCAAGGGCCCCATATTTGCCCCTCCCCATCACAGTC 2072
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2073 CTGCCCTTCACCCTCAAGCACGGTCCTAAACTTGTCTGCACTTTAGAAACACCTGGAGAGCATTGAAAACTCTG 2146
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2147 CTGCCTAAGGTCAGCATCAATCAAAACAATGAAATCAATGAAACAATGAAACCAGAGCTTCTAGGTGTGTGGCC 2220
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2221 TGGATAGTGGTAGATTCAAAGCTCCACCCACCTCATCCCAGGTACATTTGATGTGCAGCTGAGATTGGGGCACA 2294
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2295 TTCCAGGTCATCGTCTTCTGTCAGTCATTTCCCTGCTTTCGTTTGAATTTTACCATTCTTGTATGCAGCCTTAT 2368
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2369 ACGACATAGTTGTGTTTGCTTTTGAGTGTTAGATAAATGGAATCCTGTGTATGTGCTTTTGTGTCGTTTTTGTC 2442
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2443 ACTCAGCATTGTATAATCCATCCTTGTTGGGTCCTGGAGTTCATTTTTAATGCTATATGGTGTTCTGTTGTATG 2516
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2517 AATAATACCTCAAGTGATACAGCCTTGTTGATGGTCATTTTTATTGTTTCTGATTTTGGTCATTCCACATAATT 2590
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2591 CTTTGTGCAGTCTTCTGCACATGTGCACAAGTTCCTTTGCAGAACATTGAGTTGAATTGCTAAGTCAGGAGATA 2664
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2665 CCTTTAATTTTACTAGATAACTGTTGCCCCCAGCAGGGTGGGGTCTACTGTGGCTAAAATGTCAGGTAGATGCA 2738
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2739 CACTGGTTTTAATTGGCATTTCCCTGGATACTGATGAGGTTGAGTAGCTTTTCATTTGTTTTGGATGGCTGGGC 2812
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2813 ATGGTGGCTCACACCTGTAGTCCCAGCACTTTGGGAGGCTAAGCAGGGAGATTGCTTGAGGCGAAGAGTTCATA 2886
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2887 TGTTTATTGGCCACTTGGAGTTTTTCTGTTGTCAAGTGCCTGTTCAAGTTTTCTGGCCTTTTAAAATGTTCTGT 2960
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 2961 ATTTTCCTTAGTGATTTTTCTTTTGGATATTTCAGATACAAGTCTTTTGAGAGTTAGTATTCAGAGTATCTTCT 3034
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3035 GCTACAATGTAGTTTGTTTCAGTCTCTCTTGGTATTACCAATTTTAATACTTAGGTGATGCTTACTCCATGCCA 3108
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3109 GGTAAGGCTCAAAGTGCTTTACAAGTATCAACTTATTTTGATAAAATAAGCTTATCAGTAGTTTTCTTTATAGT 3182
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3183 TAAATTCTATTTGTGCATGTGTGTGTCTGTGGTTTAGCAAATGTTTCCCACCCATGGGGTCTTTTTTATTGTGG 3256
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3257 TAAAATATACTGAACATAAAATTTATGTTCAATAAAAAACAAAAATTGTTTTTAACCATTTTAAGTACATAGTT 3330
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3331 CAGTGACATTATATGCATTCACTGTTGTGCAACCGTCACCCCTATGCATTTCCAGAACTTTTTCATCATTCTAT 3404
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3405 GCTGAAACTCTGTGCATTAAACACTTAACTCGTCAGTCTCCCCTTCCCCAGCCCCAGGCAACCACAGTCCTAAC 3478
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3479 CTTCTGTTCCTATGATACTGTAAGTGCCTCATGTAAGTGAAATCCCATAGTATTTGTCTTTTTATGACTGGCTT 3552
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3553 ATCTCACTTAGCAGCATGTCCTCCAAGTTCATCCATGATGTAGCTTATGTATCTAGACTTCCTGCCTTTTAAAG 3626
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3627 GCTAAGATTCTGTTGTATGTATACACTGCGTTTTATTCATCCGTGCATTGGTGGATATCTGAGTTGTTCACTAC 3700
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3701 AGTCAATAATGTTGCTGGGAACATGGGTGTACAACTCTCTTGAGTCTCTGCTTTCAGTTCTTTTGGATATATAC 3774
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3775 CCAGAGTGGAATTGCTGGATTGTGTGGTAATTCTAAATTTTTTTGAGGAACTGCCCTGTTTCCCACAGAGGCTG 3848
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3849 CATCATTTTACATCCCCACTGGAAGTGCACACAAATCCTAATTTCTCCACATCCGCGTCCACACTTGTTTTCTA 3922
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3923 TTTCTGGTTAACAGCCATCCTAATGGGTGTGAAGTGGTATTTCATTGTGGGTTTTTTTTTTTTTTTTTGGACAG 3996
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 3997 GGTCTCTCTGTTGTCCAGGCTGGAGTACAGCCTCCACCTTCTGGGCTTAAGCCATCCTCCCGGGTAGCTGGGGC 4070
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4071 TACAGGCACGTGCCACCACATCTGGCTAGTTTTTTGTATTTTTAGTAGAGATGGGGTTGTTGCATATTGCCCAG 4144
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4145 GCTGGTCTCAAACTGCTGGGCTGAAGCGATCCACTTGCCTTAGCCTCCCAAAGTACTAGGATTATAGGCATGAG 4218
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4219 CCATCATGCCTGGCCAAGCCATTTTTTAAAATGGACAAAAGTCAACAAAGACGACAGAAGGATAGCAAGTGAGC 4292
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4293 ATATGAGAAGATGCTCTACATCATTAGTCATTAGGGAGTTGTAAATGAAAACCATAGTGAGACACCACTCCATA 4366
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4367 CACAGAATAACTAGAATTACATAAAGGCTGAACATACCAACTGTTGGTGAAGATGTGGAGAAACTGGAACCTTC 4440
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4441 ATACATTACTGGTAGGAATGTAAAATGGTACAACTGCTTTGGAAAACAGTTTGGCATTTCTTCTTTTTTAAGAT 4514
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4515 GGAGTCTTGCTCTGTTGCCCAGGCTAGAGTGCAGTGGTGCAATCTCAGCTCACTGCCACTTCCGCCTCCTGAGT 4588
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4589 TCAAGGAATTCTCCTTCCTCAGCCTCCTGAATAGCTGAGATTACAGGTGTGTGCCACCACAGCCAGCTAATTTT 4662
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4663 TGTATTTTTAGTAGAGATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCGTGATCTGCCC 4736
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4737 ACCTTAGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCCGGCCCAGTTTGGCATTTCTTAAAAA 4810
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4811 GTTAAGTGTACACATACCATAGATGTGATCCAGCCATTTCACTCCTAGGTATTTATCCAGAAAAAAAAATATAT 4884
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4885 CCATACAAAGACTTGTACATGAATGTTTATAACAGCCTTGTTTTTAATAGCCAAAAACTGGAGAAAAGCCAAAT 4958
Query 1129 -------------------------------------------------------------------------- 1128
Sbjct 4959 GTGAAAAATAAACCTAACAGGCGAATAAACTGGTATATCAACACCATGGAATACTAAGCAAAAAAAAAAAAAAA 5032
Query 1129 --------------------- 1128
Sbjct 5033 AAAAAAAAAAAAAAAAAAAAA 5053
