Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04579
- Subject:
- XR_001746417.2
- Aligned Length:
- 3900
- Identities:
- 690
- Gaps:
- 3159
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTCCTTAGTAACCTGGGCGATAGCTGATGAGACGGAAGTCCTGAGAGTTTGACCGATTTAAGGTCACGTGCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGGAAGTGCTGGAACCAAGACTCGGAGTTTTCTCTAAGTTTAGTGCCTTTATTTTGTTTTAAACCACACTGTTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CATTTCCCCCCATTTTGGAAAGCTTTATAGTTGGAAAGAATGAAAACCTGATCTGACCCCTTCATTTTATGGTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAAACAAAATCTACGTAGGAGAAATCACTTGGTACAAGTCACAAGTCAGTGGTAGAGCTGCCGCAAATGCTTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TGAATACGTGTGATTATGAATCTAAATGGCAGATGGCAGGGAGTGATAAGTGGATGTTTCCAAGGATTGTCTTC 370
Query 1 ----ATGGCCTTGGGATTAAAGTGCTTCCGCATGGTCCACCCTACCTTTCGCAATTATCTTGCAGCCTCTATCA 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGTCATGGCCTTGGGATTAAAGTGCTTCCGCATGGTCCACCCTACCTTTCGCAATTATCTTGCAGCCTCTATCA 444
Query 71 GACCCGTTTCAGAAGTTACACTGAAGACAGTGCATGAAAGACAACATGGCCATAGGCAATACATGGCCTATTCA 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GACCCGTTTCAGAAGTTACACTGAAGACAGTGCATGAAAGACAACATGGCCATAGGCAATACATGGCCTATTCA 518
Query 145 GCTGTACCAGTCCGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTCCCAAACCAGAGTGAA 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCTGTACCAGTCCGCCATTTTGCTACCAAGAAAGCCAAAGCCAAAGGGAAAGGACAGTCCCAAACCAGAGTGAA 592
Query 219 TATTAATGCTGCCTTGGTTGAGGATATAATCAACTTGGAAGAGGTGAATGAAGAAATGAAGTCTGTGATAGAAG 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TATTAATGCTGCCTTGGTTGAGGATATAATCAACTTGGAAGAGGTGAATGAAGAAATGAAGTCTGTGATAGAAG 666
Query 293 CTCTCAAGGATAATTTCAATAAGACTCTCAATATAAGGACCTCACCAGGATCCCTTGACAAGATTGCTGTGGTA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTCTCAAGGATAATTTCAATAAGACTCTCAATATAAGGACCTCACCAGGATCCCTTGACAAGATTGCTGTGGTA 740
Query 367 ACTGCTGACGGGAAGCTTGCTTTAAACCAGATTAGCCAGATCTCCATGAAGTCGCCACAGCTGATTTTGGTGAA 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACTGCTGACGGGAAGCTTGCTTTAAACCAGATTAGCCAGATCTCCATGAAGTCGCCACAGCTGATTTTGGTGAA 814
Query 441 TATGGCCAGCTTCCCAGAGTGTACAGCTGCAGCTATCAAGGCTATAAGAGAA-AGTGGAATGAATCTGAACCCA 513
||||||||||||||||||| .||||.|||...||||.|.|| |.|..|||| ..|||
Sbjct 815 TATGGCCAGCTTCCCAGAG------------ACTATGAAGCAAATAAAACAATACTTTAATG-------GGCCA 869
Query 514 GAAGTGG---AAGGGACGCTAATTCGGGTACC----CATT----------------CCCCAAGTA--------- 555
.|.|||| .||||.|.|.||||.|.| ||| |||| ||.|.||.|
Sbjct 870 AATGTGGCCTGAGGGCCACCAATTTGTG-ACCTCTGCATTAGTATTTGGAGCAGACCCTCCAGGAAGTCCTTTT 942
Query 556 --ACCAGA--GAGCA---CAGAGAAATGC-TGGTG-------------AAACTGGCCAAACAGAACACCAACAA 608
||.||| ||.|| ||||..|.||| |||.| ||||||| |..||| ..
Sbjct 943 ATACTAGACTGACCATTGCAGAATATTGCATGGAGCACAGTGCTTCCAAAACTGG----AAGGAA-------TT 1005
Query 609 GGCC-----AAAGACTCTT----TAC--GGAA---GGT--------TCGCACCAACT----------CAATGAA 650
|||| .|.||.|||| ||| |||| ||| |..|||||||| |..||..
Sbjct 1006 GGCCTGGATTAGGAGTCTTAGAGTACCTGGAATCCGGTCCCATCTCTACCACCAACTGGCTGTTTGACCTTGGG 1079
Query 651 CAAGCTGAAGAAATCCAAGGATACAGTCTCAGAGGACACCATT------------------------------- 693
||||.| |.|.||.||||.| ||.|.|||||
Sbjct 1080 CAAGTT-------------GCTTCACTCTCTG-GGCCTCCATTTCCTCATCTGCTAATATAAGTGTACAGCTGC 1139
Query 694 --------AGGCTAATAGAGAAA------------------CAG------------------------------ 711
||||||..||||||| |||
Sbjct 1140 AGCTATCAAGGCTATAAGAGAAAGTGGAATGAATCTGAACCCAGAAGTGGAAGGGACGCTAATTCGGGTACCCA 1213
Query 712 -------ATCAGCCAAATGGCCGATGACACAGTGGCAGAACTGGACAGGCATCTGGCAGTGAAGACCAAAGAAC 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1214 TTCCCCAATCAGCCAAATGGCCGATGACACAGTGGCAGAACTGGACAGGCATCTGGCAGTGAAGACCAAAGAAC 1287
Query 779 TCCTTGGA------------------------------------------------------------------ 786
||||||||
Sbjct 1288 TCCTTGGATGAAAGTCCACTGGGGCCAGCAATACTCCAGAGCCCAGTTTCTGCTGGATCCCATGGGTGGCACAT 1361
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1362 TGGGACTTCTCTCCCTCCCCCATCTACACAGAAGACTGTCACCATGCTGACAGAAGCCTGTCCTTGTAAGGCCC 1435
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1436 AGCCTTCCAGGGGAACACTCAGACATGTTCATTCTCTTCCTGCTTCTGCTCTGGGCCGGTGGGTGGCTCTCAGA 1509
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1510 AAATACTTGCTGCTGGCAAAAGGCCTGTACTCAGGCATTTGCTTTGACTTGATGTTGCCAAGGGACTGAGGCCA 1583
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1584 TTGGCAGGCTTAGTACCACCTGCTCCTCATCTTAGGAGTCTCCTTTTCAAATAATTAGGCTCTGTTCCCATTTT 1657
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1658 AAAACTCTGATATTGGCCTTCACCTGTGACTGGACACTTTACTAGAGGCCCATTTTCACTAAACAATAAAATCT 1731
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1732 AAATAAATTGGAAGGAATAACAACCACAAAGGAAAGAATAGAGTTGGTCTGGATTGATGATCACTGAGGATCTG 1805
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1806 TATGTGAGGCACCCATAACAGTAGTTTTGCCTGTGAGTCGTCTTCACACATGCTGTTTTCTCTGCCTGGCTCTC 1879
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1880 TCTTCCCCTCCTTACCTGGCCAGTCCTGTTTATCATCAGGCCTTGTCTTGGATATCACGTCCTCTGGGAAGTCT 1953
Query 787 -------------------------------------------------------------------------- 786
Sbjct 1954 TCTTTTCCCCTCTAACCTAGGACCCTCATTACCGGCTCTCATAGCACAGTCTACTGCTTTGTACGAATTCTAAG 2027
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2028 TATTCTTGTTGCACTTAATTAGCCTGTATATCCTCAGAACTTTGTGTAATGCCTGGAGCATAGTAGGCAGTCAT 2101
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2102 ATGTTGTATCGTGAATAAATTGCACATAGTAGCTACCCAGCAAATGCTGACTTCTTTTCTTTCTAGTCTTAACA 2175
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2176 CTCCCTTTCTATCATTTTCCACTCTTGTACTTGTTCTCAACATTTACTTGGTAGTGACATACCTTTCCTGCAGG 2249
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2250 GCCTGCCCATTGTTGACAGACAAGTAGTTTATTGTGGCTTATCTTCGGATACTGGGTTATTAGGTTTTTTTCCC 2323
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2324 TCCAATTATTTTTTATTCATTCATTCATTCCTAATATAGCCATTATGAGTTAGGTATAGTTCTAGGCATTATTT 2397
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2398 ATAATCTTGACAGTAAACTTAAGAGATGTGTATTATCTTCATTTACAAATAGGAAAACTAAGTCTTGACAGTAT 2471
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2472 TAGGTAATTTGCCCAAAGTAACAAAGCAAAGCTGATCAGTGGTAGAAGGTTTTCATGATTCATTGTCAGCGTCA 2545
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2546 TTTACATAGAGGTGAAGTTTCTTGTGCAGGGTTACACACCTAGCAAGTAGCAGAGCTGGCATTCAAATTGAGGC 2619
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2620 CTGATGTGCTAATGTAAAAGGAAAAAAACAAACTTTTTTTCCTTTTGTACTTTCACACTCAACATGGAACACTT 2693
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2694 CTGTGACAAGGTGTGTGAGTTTGTTTCCCCCACACACCAAGCAATTCTCCAGCAGACACCAACTGGGTATCCTA 2767
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2768 TAATTCAATTCATTTCTGACATTACCTGGAAATAGTGTCAGATCCCACAGGTTGAGGGCTCCATCTCCCAAGAC 2841
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2842 TGCCAACACTTTTGATGCCAGTCATGAGTCTGGGCCACCCATACTCCTGACTGACCAACTACAAACTAGAGTCC 2915
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2916 TTGATTTCCTTTGGTTCAGTTAATTTCCTAGGACAGCTCACACAACTCAGGGAAACACGTTCACTGGTTTATTA 2989
Query 787 -------------------------------------------------------------------------- 786
Sbjct 2990 TAAAAGATACAGCTGAACAGCCCAATGAAGGAGGTACACAGGGCAAGGTTGAGGGAGAGGGAGAGGGTGTGGAG 3063
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3064 CTTCCATGCCTTCTCTGGGCTCACACTCTCTCAGCACCTCACCAATCTGGAAGGAACCACTGTGTCCTGCTGCC 3137
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3138 TTCATTAGCATTTAGTGAGCACCAATTGTTTGTCAGGTGCTGAACTATGTACTGGCAATACAAAAATGGGAAAG 3211
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3212 ATATGACCCCTGTTTTGGGGGGGTACATAGTGCACTGAACTAAATTGCTGTCTATAATAATCTATTGGGTGGAA 3285
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3286 AAGTAGGAAGTTCATTCCAGTTCTGCAAGGTGTCTGCTTTCAGAATGGAGCCCACTTTGGTGGTGGCAAGGCCT 3359
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3360 GGCTGAGTTCTTTCAAAGCAACATCCAACTTCTCTTTGCTCTTTGACTTCCTCCAGATTCTCTCCTGTGCTGGA 3433
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3434 GGTAATAAGGGTTGCACTTCCCTCTTTACTTACACTGGTGAAACATGCAGTGAGGATTCAAGGTCAAAATTGGG 3507
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3508 TCAAAGTTAAACTAACACAGTCTCCTGCCCCACTTACCTGTCCTCTAACCCCATCCACCAGCCCTAAGTGGTCA 3581
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3582 TCACATGATCAGAAGTCAGCTGGGGGAAGAGCAGGGATAGATAGAGCAATTAAGGAGCCTCTTTTGGGGTAAGC 3655
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3656 CACATGACAGGGGCTTTGCAACAGTCTTTCATGAGTGGCCGAAATCCCCCACTCACTGCAAATGTGCTTCTCAA 3729
Query 787 -------------------------------------------------------------------------- 786
Sbjct 3730 AGATGCAGGATTTTTTAATAAACAGAGGAAATGATAAATTATGTTGTAATTCCACTCCAAAGGCATTTGGTTCT 3803
Query 787 ---------------------------------------------------- 786
Sbjct 3804 TAACAGCCAAATCCTCTGTAGTCTTTAAATAAACAAAAACTTATTTGGTGAA 3855
