Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_04688
• Subject: XR_941488.1
• Aligned Length: 2095
• Identities: 1080
• Gaps: 958

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTCTTGTAGTGGCGCCGGCTTGCATCCCAGGTCGTGGCGGTTTTGGTGCCTGAAGCAGGGAGCGCGGAGTCGTT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCGAGAGAGGCGGCCAGGCTATGCTCGCCGGTTTCCGGCGTTCCGCTCCGGCCAGCCAGAGTCTCTGTCTCAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCTGTGTCCGTGCTCCAGCAGTCTCCTCAGCCCGGCCCCGCGGCGCGGTTGGCGGCGGCGCCCCAGGCGCGCCC  222

Query    1  ---------ATGGCGGCGGAGATCCAGCCCAAGCCTCTGACCCGCAAGCCGATCCTGCTGCAGCGGATGGAGGG  65
                     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCTCCTCCGATGGCGGCGGAGATCCAGCCCAAGCCTCTGACCCGCAAGCCGATCCTGCTGCAGCGGATGGAGGG  296

Query   66  GTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAGGA  139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GTCCCAGGAGGTGGTGAATATGGCCGTGATCGTGCCCAAAGAGGAGGGCGTCATCAGCGTCTCCGAGGACAGGA  370

Query  140  CAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTTCTCCATGT  213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CAGTTCGTGTTTGGTTAAAGAGAGACAGTGGACAGTATTGGCCAAGCGTATACCATGCAATGCCTTCTCCATGT  444

Query  214  TCATGCATGTCTTTTAACCCGGAAACAAGAAGACTGTCCATAGGTCTAGACAATGGTACAATCTCAGAGTTTAT  287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TCATGCATGTCTTTTAACCCGGAAACAAGAAGACTGTCCATAGGTCTAGACAATGGTACAATCTCAGAGTTTAT  518

Query  288  ATTGTCAGAAGATTATAACAAGATGACTCCTGTGAAAAACTATCAAGCGCATCAGAGCAGAGTGACGATGATCC  361
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATTGTCAGAAGATTATAACAAGATGACTCCTGTGAAAAACTATCAAGCGCATCAGAGCAGAGTGACGATGATCC  592

Query  362  TGTTTGTCCTGGAGCTGGAGTGGGTGCTGAGCACAGGACAGGACAAGCAATTTGCCTGGCACTGCTCTGAGAGT  435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGTTTGTCCTGGAGCTGGAGTGGGTGCTGAGCACAGGACAGGACAAGCAATTTGCCTGGCACTGCTCTGAGAGT  666

Query  436  GGGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCAGGCCTGCAATTTGATGTTGAAACCCGGCATGT  509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGCAGCGCCTGGGAGGTTATCGGACCAGTGCTGTGGCCTCAGGCCTGCAATTTGATGTTGAAACCCGGCATGT  740

Query  510  GTTTATCGGTGACCACTCAGGCCAAGTAACAATCCTCAAACTGGAGCAAGAAAACTGCACCCTGGTCACAACAT  583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GTTTATCGGTGACCACTCAGGCCAAGTAACAATCCTCAAACTGGAGCAAGAAAACTGCACCCTGGTCACAACAT  814

Query  584  TCAGAGGACACACAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTCA  657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAGAGGACACACAGGTGGGGTGACCGCTCTCTGTTGGGACCCAGTCCAGCGGGTGTTGTTCTCAGGCAGTTCA  888

Query  658  GATCACTCTGTCATCATGTGGGACATCGGTGGGAGAAAAGGAACAGCCATCGAGCTCCAAGGACACAACGACAG  731
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GATCACTCTGTCATCATGTGGGACATCGGTGGGAGAAAAGGAACAGCCATCGAGCTCCAAGGACACAACGACAG  962

Query  732  AGTCCAGGCCCTCTCCTATGCACAGCACACGCGACAATTGATCTCCTGTGGCGGTGATGGTGGGATTGTCGTCT  805
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGTCCAGGCCCTCTCCTATGCACAGCACACGCGACAATTGATCTCCTGTGGCGGTGATGGTGGGATTGTCGTCT  1036

Query  806  GGAACATGGACGTGGAGAGGCAGGAGACCCCTGAATGGTTGGACAG-TGATTCCTG----CCAAAAGTG-----  869
            |||||||||||||||||||||||||| ||.|||  |||      || ||.|||.||    ..|.|||||     
Sbjct 1037  GGAACATGGACGTGGAGAGGCAGGAG-CCTCTG--TGG------AGCTGCTTCGTGGTTATGATAAGTGCTGTG  1101

Query  870  ---TGATCAGCCTT-------------------------TCTTCTGGAAC------------------TTC---  894
               ||.||| ||||                         ||.|||..|||                  |||   
Sbjct 1102  TGATGCTCA-CCTTGGGAGGTCTGCGACATATATTGAAGTCATCTCTAACCTGAAGTACTGACAGACTTTCTGG  1174

Query  895  AAGCAAA----TGTGGGA--------CAG--------TAA--------------GAA-----AATTGGTCTAAG  929
            |||.|||    |||.|||        |||        |||              |||     |.|||.|.||.|
Sbjct 1175  AAGAAAAGGCTTGTAGGAGGAAACTTCAGAATTCTATTAAATGGTGTAAATGATGAAATTATAGTTGATATATG  1248

Query  930  --ACAGCACCACTGCCGCAAGTGTGG--------GAAGGCCGTCTG-TGGCAAGTGCAGCTCCAAGCGCTCCTC  992
              |.||||.||.|||        |||        |||||      | |||  |||                   
Sbjct 1249  CTAGAGCATCAGTGC--------TGGGTATTTTAGAAGG------GATGG--AGT-------------------  1287

Query  993  CATCCCCCTGATGGGCTTCGA--GTT-----TGAAG---TGAGGGTCTGTGACA----GCTGCCACGAGGCCAT  1052
            ||||      ||.||||   |  |||     |||||   ||||||  .|..|||    ||||    .|||  ||
Sbjct 1288  CATC------ATTGGCT---AATGTTCCCAGTGAAGGATTGAGGG--AGGAACATTGTGCTG----AAGG--AT  1344

Query 1053  C-ACAGATGAAGAACGTGCACCCA-CAG--CCAC-----CTT------CCATG--ACAGTAA--------ACA-  1100
            | |||||....|.|.||||.|..| |||  .|||     |||      |||.|  ||||.||        ||| 
Sbjct 1345  CAACAGAGTCTGGATGTGCTCTGAGCAGGAGCACATGGGCTTTGCAGGCCACGAAACAGCAAGAGTAAGGACAA  1418

Query 1101  ---TAACA-------TTG-TGCATGTGCATT-----TC--------------GATGCA-------ACCAGAGGA  1137
               .||||       ||| |||| |||||||     ||              ||.|||       |..||||||
Sbjct 1419  GGTGAACACGATAGGTTGATGCA-GTGCATTAATGCTCATGAGCGGTTTAGAGAAGCAGTCAGAGATGAGAGGA  1491

Query 1138  TGG----TTACTGA-------------------------CTT------CTGGA---------ACTGACA-----  1162
            |||    |..||||                         |||      |||||         |.|||||     
Sbjct 1492  TGGCAGCTAGCTGAAAGATAAGGACAGACAATGGAAGACCTTGAGTGGCTGGATGTAGATCGAGTGACATTGCA  1565

Query 1163  -AGGTTATTAAGTTGTGGGAT-------ATG-ACCCCAGTCGTGTCT---------------------------  1200
             |||||....||.|||...||       ||| |..|||.|..|||.|                           
Sbjct 1566  TAGGTTGAACAGGTGTTTTATACAGTTAATGAAATCCATTTTTGTTTTGTTAACTTTTAGCATTTTTTAAAAGT  1639

Query 1201  --------------------------------------------------------------------------  1200
                                                                                      
Sbjct 1640  ATATATTGTATATAACATTCTTGGTAGAAAAGTTACAAAATGCTCATTAGTAAATAGAAAAGATGTCAATTACT  1713

Query 1201  --------------------------------------------------------------------------  1200
                                                                                      
Sbjct 1714  CATACTACCACCATCCAGAAATATCACTCTGAACATGTTGGCACACATCCTTCCTAACATTTTTCTCTACACAT  1787

Query 1201  --------------------------------------------------------------------------  1200
                                                                                      
Sbjct 1788  AACACGTGTGTAAGACTTTTTTTTGAACAAAAAATAGAATCACAAACATGCTGATTTATTTTTTCCCCTTTATT  1861

Query 1201  --------------------------------------------------------------------------  1200
                                                                                      
Sbjct 1862  GGTCTTTAGCTCCCAAATGCCTCCTCACAGATACCCACTGTGATGTGTTTGATGTGTGTCCTGAACACGCATGC  1935

Query 1201  --------------------------------------------------------------------------  1200
                                                                                      
Sbjct 1936  TTCCTTATAAAAGACCCCTGAATGGTTGGACAGTGATTCCTGCCAAAAGTGTGATCAGCCTTTCTTCTGGAACT  2009

Query 1201  -----------------------  1200
                                   
Sbjct 2010  TCAAGCAAATGTGGGACAGTAAG  2032