Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04817
Subject:
XM_006501250.3
Aligned Length:
1358
Identities:
1071
Gaps:
130

Alignment

Query    1  ATGTCTTTGGTGGACTTGGGAAAGAGGTTGCTAGAAGCAGCAAGAAAAGGCCAAGATGATGAAGTGAGAACGTT  74
            ||||||.|||||||||||||.||||||.||||||||||.|||||.|||||||||||.|||||||||||.||..|
Sbjct    1  ATGTCTCTGGTGGACTTGGGGAAGAGGCTGCTAGAAGCTGCAAGGAAAGGCCAAGACGATGAAGTGAGGACACT  74

Query   75  GATGGCAAATGGCGCCCCATTCACCACAGACTGGCTTGGAACATCACCCCTCCACCTTGCAGCTCAATATGGTC  148
            ||||||||||||.||.||||||||||||||||||||.|||||||||||.||.|||||||||||.||.|||||||
Sbjct   75  GATGGCAAATGGGGCTCCATTCACCACAGACTGGCTCGGAACATCACCGCTTCACCTTGCAGCCCAGTATGGTC  148

Query  149  ATTATTCCACAGCAGAAGTACTCCTTCGAGCAGGTGTTAGCAGGGATGCCCGGACTAAAGTAGACAGGACCCCC  222
            |||||||||||||||||||.|||||||||||.||.||||||||||||||||||||.|||||.|||||||||||.
Sbjct  149  ATTATTCCACAGCAGAAGTGCTCCTTCGAGCTGGCGTTAGCAGGGATGCCCGGACCAAAGTGGACAGGACCCCT  222

Query  223  TTGCACATGGCTGCAGCCGATGGACATGCGCACATCGTGGAACTGCTTGTTCGGAATGGTGCAGATGTGAATGC  296
            |||||.|||||||||||.||||||||||..|||||||||||||||||||||.|||.|||||||||||||||.||
Sbjct  223  TTGCATATGGCTGCAGCTGATGGACATGTTCACATCGTGGAACTGCTTGTTAGGAGTGGTGCAGATGTGAACGC  296

Query  297  CAAGGACATGCTGAAGATGACAGCTTTGCATTGGGCCACAGAGCGCCACCATCGAGATGTCGTAGAGTTACTTA  370
            .||||||||||||.|||||||||||.||||.|||||||||||||.|||.||.||.||||||||.||||||||||
Sbjct  297  AAAGGACATGCTGCAGATGACAGCTCTGCACTGGGCCACAGAGCACCATCACCGGGATGTCGTCGAGTTACTTA  370

Query  371  TCAAATATGGAGCTGATGTCCATGCTTTCAGCAAATTTGATAAATCAGCCTTTGACATAGCTCTGGAGAAAAAC  444
            ||||||||||||||||||||.|.|||||.||||||||||||||.||.||||||||||||||..|||||||||||
Sbjct  371  TCAAATATGGAGCTGATGTCTACGCTTTTAGCAAATTTGATAAGTCTGCCTTTGACATAGCAATGGAGAAAAAC  444

Query  445  AATGCTGAGATTTTGGTCATCCTCCAGGAAGCAATGCAGAATCAGGTGAATGTTAATCCA-GAGAGAGCCAACC  517
            |||.||||||||||||||||.||.||||||||||||||||||||||||||...||| ||| |||||||||||||
Sbjct  445  AATACTGAGATTTTGGTCATGCTTCAGGAAGCAATGCAGAATCAGGTGAACACTAA-CCACGAGAGAGCCAACC  517

Query  518  CTGTGACTGACCCTGTGAGTATGGCTGCTCCATTCATCTTCACGTCGGGTGAGGTTGTTAACCTCGCAAGCCTT  591
            |.|||.||.|||||||||.|.||.|||||||.|||||||||||.||.||.|||||..||||||||||.|||.||
Sbjct  518  CAGTGGCTAACCCTGTGACTGTGACTGCTCCGTTCATCTTCACCTCTGGAGAGGTCATTAACCTCGCTAGCTTT  591

Query  592  ATTTCTTCAACCAACACCAAAACAACCTCAGGTGACCCCCATGCCTCAACAGTACAGTTTTCAAATTCTACCAC  665
            .|.||||||.|||||||||||.|||||||||             ||||         |||              
Sbjct  592  GTCTCTTCAGCCAACACCAAAGCAACCTCAG-------------CTCA---------TTT--------------  629

Query  666  CTCAGTGCTGGCTACCCTTGCAGCTCTTGCTGAGGCATCAGTCCCCCTCTCCAACTCACACAGAGCCACAGCCA  739
                                                                                      
Sbjct  630  --------------------------------------------------------------------------  629

Query  740  ATACAGAGGAAATTATAGAAGGAAATTCCGTTGACTCATCAATCCAGCAAGTAATGGGGAGTGGAGGCCAGAGG  813
                |||.|||||...||||||||||||..|||||||.||.|.|||||||||..||||||||||||||||||||
Sbjct  630  ----AGAAGAAATGGAAGAAGGAAATTCTCTTGACTCCTCGACCCAGCAAGTGGTGGGGAGTGGAGGCCAGAGG  699

Query  814  GTCATCACCATAGTGACTGATGGAGTCCCTCTGGGTAATATCCAAACTTCAATCCCTACTGGAGGCATTGGCCA  887
            |||||||||||.||||||||||||||||||||||||||.||||||||.|||.|||||.||||||||||||||||
Sbjct  700  GTCATCACCATCGTGACTGATGGAGTCCCTCTGGGTAACATCCAAACATCACTCCCTGCTGGAGGCATTGGCCA  773

Query  888  GCCATTTATTGTAACTGTGCAAGATGGACAGCAAGTTCTAACTGTACCTGCTGGTAAGGTTGCAGAGGAGACTG  961
            ||||||||||||||||.||||||||||||||||||||||||||||.|||||||||.||||||||||||||||..
Sbjct  774  GCCATTTATTGTAACTATGCAAGATGGACAGCAAGTTCTAACTGTGCCTGCTGGTCAGGTTGCAGAGGAGACAA  847

Query  962  TAATTAAAGAGGAA------GAAGAAGAGAAGTTGCCACTAACAAAGAAACCAAGGATAGGAGAGAAGACAAAC  1029
            |||||.||||.|||      |||||||||||.||||||.|....||||.|||||||||.|.|||||.|||||||
Sbjct  848  TAATTGAAGATGAAGAAGAGGAAGAAGAGAAATTGCCATTGGTGAAGAGACCAAGGATGGCAGAGATGACAAAC  921

Query 1030  AGTGTGGAGGAAAGCAAGGAAGGCAATGAAAGAGAGCTACTACAGCAACAACTCCAGGAGGCCAATCGAAGAGC  1103
            ||.||.|||||||..||||||||||.|||||||||||||||.||||||||.||||||||||||||.||||||||
Sbjct  922  AGGGTTGAGGAAATGAAGGAAGGCAGTGAAAGAGAGCTACTGCAGCAACAGCTCCAGGAGGCCAACCGAAGAGC  995

Query 1104  CCAGGAATACCGACACCAGCTCCTAAAGAAAGAGCAGGAAGCAGAACAGTACCGTCTTAAGCTGGAGGCCATAG  1177
            ||||||.|||.|||||||||||||.||||||||||||||.||.||.|||||.||.||.|.|||||||||.||.|
Sbjct  996  CCAGGAGTACAGACACCAGCTCCTCAAGAAAGAGCAGGAGGCCGAGCAGTATCGGCTCAGGCTGGAGGCTATGG  1069

Query 1178  CCCGACAGCAGCCCAA------TGGAGTTGATTTCACCATGGTTGAAGAGGTGGCTGAGGTAGATGCTGTAGTA  1245
            |.|..||||||.||||      ||.|||||||.|||||.|.|||||.||.||.|||||.||.|||||||||||.
Sbjct 1070  CTCAGCAGCAGACCAACGGAGTTGAAGTTGATGTCACCGTAGTTGAGGAAGTAGCTGAAGTGGATGCTGTAGTG  1143

Query 1246  GTCACAGAGGGGGAGTTGGAAGAGAGAGAGACAAAAGTGACTG-GGTCAGCAGGGACCACAGAGCCTCACACTA  1318
            ||.|||||.|||||...||.|||.||||..|||.||||.| || .|||||.|.|||||||.|||||||||||||
Sbjct 1144  GTGACAGAAGGGGACGAGGTAGAAAGAGCAACACAAGTCA-TGAAGTCAGGAAGGACCACGGAGCCTCACACTA  1216

Query 1319  GAGTTTCCATGGCAACTGTTTCATCT  1344
            ..||||||||.|.||||.|||||||.
Sbjct 1217  ACGTTTCCATAGAAACTATTTCATCC  1242

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