Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04821
Subject:
XR_001736963.2
Aligned Length:
5181
Identities:
710
Gaps:
4470

Alignment

Query    1  -------------ATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCGCCGGCAGGGAGGCATA  61
                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  AGTGGCATCAGCGATGGCGGCTGCGTCGGGGTCGGTTCTGCAGCGCTGTATCGTGTCGCCGGCAGGGAGGCATA  74

Query   62  GCGCCTCTCTGATCTTCCTGCATGGCTCAGGTGATTCTGGACAAGGATTAAGAATGTGGATCAAGCAGGTTTTA  135
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  GCGCCTCTCTGATCTTCCTGCATGGCTCAGGTGATTCTGGACAAGGATTAAGAATGTGGATCAAGCAGGTTTTA  148

Query  136  AATCAAGATTTAACATTCCAACACATAAAAATTATTTATCCAACAGCTCCTC----------------------  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||                      
Sbjct  149  AATCAAGATTTAACATTCCAACACATAAAAATTATTTATCCAACAGCTCCTCCCAGTTACACTGTTGGACCAAG  222

Query  188  -----CCAGATCATATACTCCTATGAAAGGAGGAATCTCCAATGTATGGTTTGACAGATTTAAAATAACCAATG  256
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TTTTGCCAGATCATATACTCCTATGAAAGGAGGAATCTCCAATGTATGGTTTGACAGATTTAAAATAACCAATG  296

Query  257  ACTGCCCAGAACACCTTGAATCAATTGATGTCATGTGTCAAGTGCTTACTGATTTGATTGATGAAGAAGTAAAA  330
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACTGCCCAGAACACCTTGAATCAATTGATGTCATGTGTCAAGTGCTTACTGATTTGATTGATGAAGAAGTAAAA  370

Query  331  AGTGGCATCAAGAAGAACAGGATATTAATAGGAGGATTCTCTATGGGAGGATGCATGGCAATGCATTTAGCATA  404
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct  371  AGTGGCATCAAGAAGAACAGGATATTAATAGGAGGATTCTCTATGGGAGGATGCATGGCAATACATTTAGCATA  444

Query  405  TAGAAATCATCAAGATGTGGCAGGAGTATTTGCTCTTTCTAGTTTTCTGAATAAAGCATCTGCTGTTTACCAGG  478
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TAGAAATCATCAAGATGTGGCAGGAGTATTTGCTCTTTCTAGTTTTCTGAATAAAGCATCTGCTGTTTACCAGG  518

Query  479  CTCTTCAGAAGAGTAATGGTGTACTTCCTGAATTATTTCAGTGTCATGGTACTGCAGATGAGTTAGTTCTTCAT  552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCTTCAGAAGAGTAATGGTGTACTTCCTGAATTATTTCAGTGTCATGGTACTGCAGATGAGTTAGTTCTTCAT  592

Query  553  TCTTGGGCAGAAGAGACAAACTCAATGTTAAAATCTCTAGGAGTGACCACGAAGTTTCATAGTTTTCCAAATGT  626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TCTTGGGCAGAAGAGACAAACTCAATGTTAAAATCTCTAGGAGTGACCACGAAGTTTCATAGTTTTCCAAATGT  666

Query  627  TTACCATGAGCTAAGCAAAACTGAGTTAGACATATTGAAGTTATGGATTCTTACAAAGCTGCCAGGAGAAATGG  700
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTACCATGAGCTAAGCAAAACTGAGTTAGACATATTGAAGTTATGGATTCTTACAAAGCTGCCAGGAGAAATGG  740

Query  701  AAAAACAAAAA---------------------------------------------------------------  711
            |||||||||||                                                               
Sbjct  741  AAAAACAAAAATGAATGAATCAAGAGTGATTTGTTAATGTCATTAGCTATTGTTAGTGTTAGTGTATTTTTTGT  814

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct  815  GTGGCCCAAGACAATCTTCTTCCAGTGTGGCCCAGGGAAGCCAAAAAATTGGACACACTTGATGTAAACATTTC  888

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct  889  AAGAAAATTCAGACTATATGATCACTCAAGACAGCCGATTCACCAGCCTTCTGAAGGGAAGACTAAGCATATTC  962

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct  963  CTATATTGAAGAAGGAAAGATATCCATGATGGTGATGCCACTAAATAGAAGCATCTTGGATCTTACTATTTGGA  1036

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1037  GTAGAACCACACAAGGAGAAGCCATCCAACCTACATAAGACTATGACGCTACCATTGAAATGGAAAATTTGCTG  1110

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1111  GAGAAAGTTGATTAAGTAACATTTCACGGAAGAGGAGAATTGTAATAACCATTTGATAGAAGAGAGATGTCCTT  1184

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1185  GAACTCAATCTATCCTGAAGATGCTCCTGAGAGGGCAAACAAATAACATCTCTCTGGAAGGATGCCTGCCTTTG  1258

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1259  TCAAAGCTTTCAAATCTGTATGACTTCTATCTTTCCTTGGCTTCCCTTACTCAATTAGTCAAGGATCCTTGTGG  1332

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1333  ATGTTTAACATAAAATGTCACTCACATCTGCCCTCCTCCTCAACTTTCCATTCCATCCTCTCCACAGATGCCTG  1406

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1407  ATGCATTTTCTTCTGACTCAGTCTTCTGTTTTTCATGGAGAACACAGAGCAAGACAGAAGCTCCCAACTGTGGC  1480

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1481  ATCCAAGAGCAACTTGAGCTGCTCCCTTACTTATCTCTGGTAATGATTTGAATCCTTTGCTTTTGCCAGACTGA  1554

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1555  CTCATCTAGTCATTGCTCCCCAAATATTCATTTCCCCATTATTTCTTGTGGCCTAAGCACCAAATTTTGTTCTT  1628

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1629  TCAAAATCTACTCTTCCTTCAGGTCTGGCTCAAACTCTTTGTGATGACTGTTCTACCATATGGCTTAATAGCTA  1702

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1703  AGTACACATGCATTGACCTCAAGCCTTCCCACAGCTCAGGTTCCTGAGGCACAGACTCTGGATGGAAATTAGCA  1776

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1777  CATAATAGGTTTATTAGAAAGTGCTCTTGGAATTAACATCTTTGGAGGAAGAAAAGAAGCAATATTGTCCAGAG  1850

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1851  AGGGAAGTTGAACTGCAATGAAGTTGCCACAGAGGCTTCAATGAATCCTTCTGGGTGTAGAGCTGGGATGACCT  1924

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1925  TTCCAGAGTTTTCCAATTAAGGGAATTGTATCTCACCTCAATCTCTAGTCTGAACCTTGGGTGAGGCAGCTTCT  1998

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 1999  TTCAGCCAATGGCAATTCCTGGAGGCACCAGGAGTTATGAGCAGTCAACACTCTTTCTTTGCTCCTGAGAAAAT  2072

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2073  TGAGTGCCCTCTTTGGTCCTGAAAGCAGCTCTGGGCAGCACTCCACAGCATCCACTACAGACTTAGTGAGTTCA  2146

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2147  CCCTGGCTCTCCCACTTACAGATTGCAGCTGCTTTGATTTAAGAAGACAATACCATTTCCAGACATCTCTTTCC  2220

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2221  TGGGGCTAACTATATTAGTATTCTGCCCTGATGGGAAGGAAGAAACTTCATGGGCAGTAAATAGCCAATTTAGA  2294

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2295  AGCAGGAGAAATATGAGGATAATATTCTATTTACTTAAGGGACACAAAGTAAATAAATGTTTTTGAAACTGAAT  2368

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2369  TGGATTGAAGTGGATCCAGATTTTCACAGGAAAAAAAAGTTTCCTTTTCCCTTAGTTCTCCTTACACACCTGGC  2442

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2443  TTTGCAGGAAAAGAAATTATCATTTGGAAACACACATCTGCCTCAGCCACAGGTGAGATATTAATGCATTCCCA  2516

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2517  CATGTCCCAAATCCTCGATCTTTGATCAGTATGATGGGAACTTTCATTGTCCAATAAAGCAAGGGACGGACTCT  2590

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2591  TTGTTTCATTCAAGTCAGTATTTCTTCTAACGGAAACTCACCCCAGGATGAAACAGCCCTGCATTTCCAGCAGC  2664

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2665  CTCTGGAGTGTCAGGTGGCCCTTCAGCCTTTGAATGCCGTGGGCTGGATTGACTCAACCATGGTTAGCTGACTT  2738

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2739  TTATTTCTTTTCTTCCTTCCTGCTCATTCAATATCATCAACCAGAGGGAAGGAGCTCTGTGTCATAAAAGTGAC  2812

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2813  CACAGCTGAGCCAATCTCGCCCTATGCCAGTCCACGTGGTAATTTTGGAAGGGCCCTGGGATATCTGACCTTAT  2886

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2887  GATGGTAAGAAAGTTTTGTGATTAATGGTGATTTTTATCTTCCGACTTCAAAGATTGACTCATGCAGAGAATGA  2960

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 2961  GCAATCTATAGGTCAGATATCTTACATCCCAGTTATTTTCTTTCTTCAGTCAAGTATTGGGAGAACTAAACACT  3034

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3035  GACCAGCTGTAAAAGACATCTATCCTGTCTGCAGAAAAGCCTATCTAATGGGCCTCTGAGGGGAATTGTTTAAA  3108

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3109  ATAATGCTATGCAATTTCTCCAAGAGTTTCTGCTGGAAAAAAAAAAAAATGAACAAATGGAAAATTTAACGCCT  3182

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3183  GAATGATCGATACTTTCTTCATGAAGCAAGGTTATTCTCTTGCCTTTTTCTCTTGTGGATGAGGTATTTTGCAG  3256

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3257  GTACTTTAAGAAGTCAACCTACCTTTTATTCAGCAATGTATCAAATATTTATTGAGGGTTTTATTACAAGATAC  3330

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3331  AGTACAGGTCCATGGGGTTATAAGGGTAGAAATAAGTGGTGCCCAGCACTGAAGGATTTTAATAATAATAATGT  3404

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3405  TAGCAATGCCAATCATAACCTCTAATGCATCTACTAAGCTTTACTTTTTACAGTGCTTTAATATATCCTGTCAT  3478

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3479  TTTAATAATTCTTATAATTTGTTATAATGTGATAACTTTTTAACATCATTTTAGCATTATATTTTATTTCATCT  3552

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3553  CATTTGATAATATAAGATGCTTAGCCCATTGTGTGCCCAGAAGTACAGTAAGTCCTTACTTATCTTGGACAATA  3626

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3627  GGTTCTTGGAAACTGGAACTTCAAGTGAAAGAACACATAACGAAAATAGCTTTGCTATAAGCTAACCGATCTAA  3700

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3701  ACAAGAGTTAAGTTGCTACAGCATATTTTGGTCACAAAAAAAAAAATCACCAAACTTCTAAAGAAAGACCCAAA  3774

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3775  CACTTCTAATATTGAAATAAACATCAAAATAACTTTGAAAGGAAGGTGAGCTACACATACACTTAAGAAAGGTT  3848

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3849  AACAAAAACAAGTAAGATAATAATTTACCCACTTATTCAAGTTCAGAAGCTCAAGGGGCCAGAGCCACTTCTGG  3922

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3923  TAGCTCAGGGTACCAGGCTGGAACCAGCCCCAGACAGGTCACCATTCCCATTGCAGGGCCCACTCATACATAGC  3996

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 3997  AACACTCACTCACGCTGGGACCAGTGAGACACACTGATTCATCTAACGGACACAGCTTTGGGTTTTGGGAGGAA  4070

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4071  ACCAGACATGGGGAGGACATGCAAAGTCCACACACACAATGACTTCAGCTAGGAATCCATTTTTTTTTTCTCAT  4144

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4145  CAACATTATAAGGAAATTACATTGAACTTAAATGACATTATTCAAGGACCTGCTTTGTAAGCTTAAGAAACAGT  4218

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4219  AGAACCCCCCTTACCCAGACACCTTGTTCCCTTAGGTATAATGAATTTAAAACTGCATTTGCATATTTACATCA  4292

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4293  AACACTTGTCACATAGCTGGGCTTTCTGTTTTGTGTAGCCAGGAGGATTTCATAACTTTTCCAAACAACAACTG  4366

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4367  CCTATTTTACATTGACTTAGTTTCCTCTTTCCTTTGTGTACACAGGTAGAAAAGGCTTGGACTACATGTTTGGT  4440

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4441  TTGAAGTTTGAAAATCTCAGTCCTTCCCCAACCATCAAAAATATTTACCTCCCTCCCTTGTCTCACAATCATCT  4514

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4515  AAGCTGCCTTCTTGAATTGACTCCCACACCTGTTCATCATAGAAGGAAAAAAATAAAAGCAAATGCCATATAAA  4588

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4589  ATCTCTCTTCTTCAACAAGGTCTTCTGTTTTGAAATATTGAAACAGTTCCTGTTCTATTACCTCACCAGCTGTG  4662

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4663  GCCTTTTATCTCCTAAAGGGAATAGCTGACGTCTTACCAGTCAAAGTCATTGTGCTTACGGACGCCATAAATAT  4736

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4737  CTCCTTTAAATCCTACATGATAAATTTCCCTCTGATTGGTAAAGCAGATACTGTAACATGCAAAGGGGGAGCAG  4810

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4811  GAGAGTCTTTGATGATGTTAAACTAAGCCCCTGGAGATATCCCAGCTCTTCCTCCAGAATTTTACTTTCCAACA  4884

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4885  ACTGGAGTCAACAAATACGGTAGAAAATGTTGTCTGGATTATCTACTCCCATTATTTTTTTTTAAACTGGTTTT  4958

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 4959  CAATGATGGGCAACCTAAAATTTACTCACACAGAACACAAAACAGTTGAATTTGTTAAAAGTCCAAAATGTGCT  5032

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 5033  TTTGTACTTTTGTAAAATGGGAATGTGCTTCTTGTACAAATCACAATATGCTTTCTAGACCACAACCTAAAAAG  5106

Query  712  --------------------------------------------------------------------------  711
                                                                                      
Sbjct 5107  GAAAGAAAAAAATCCTGTGAATAAAAAAAAAAAACAAGGACTTTCAGTTTTCTACATGCATTTGAAATGACTTT  5180

Query  712  -  711
             
Sbjct 5181  A  5181

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