Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_04900
Subject:
XR_001743167.1
Aligned Length:
4745
Identities:
1153
Gaps:
3592

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GCCCTGGGAGCTGTGTGGCCGCGTGCGCGCTCCGCCGGGGTCCTGGAGGCCTCTGGGCGCGTGCGCGGGCGGTC  74

Query    1  ----------------------------------------------------------ATGAGGCCCGGAGGGG  16
                                                                      ||||||||||||||||
Sbjct   75  GCTACCTGCGGCCGAGCCAGGGAGCGAGAGGGCGCAGAGGGCAGCGGGCTTGGGCAGCATGAGGCCCGGAGGGG  148

Query   17  AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC  90
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC  222

Query   91  ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA  164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA  296

Query  165  GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC  238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC  370

Query  239  ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC  312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC  444

Query  313  CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT  386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT  518

Query  387  CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG  460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG  592

Query  461  TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT  534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT  666

Query  535  TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA  608
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA  740

Query  609  ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT  682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT  814

Query  683  TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT  756
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT  888

Query  757  GGTATAATAAAAAATGGTGGTGTAAAACCCAATATCATTCCCTCTTATTCTGAATTAATCTATTACTTCCGTGC  830
            |                                                                         
Sbjct  889  G-------------------------------------------------------------------------  889

Query  831  ACCCTCAATGAAAGAACTTCAAGTTTTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCAGCTTTGGCTTCAG  904
                                                                                      
Sbjct  890  --------------------------------------------------------------------------  889

Query  905  GGTGCACAGTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCC  978
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  890  --------GTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCC  955

Query  979  TATATGGAAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATC  1052
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  956  TATATGGAAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATC  1029

Query 1053  TACGGATTTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGA  1126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030  TACGGATTTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGA  1103

Query 1127  ATCATACTGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCT  1200
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104  ATCATACTGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCT  1177

Query 1201  CTGGCAATGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAA  1274
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178  CTGGCAATGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAA  1251

Query 1275  ACTTCAAGAAGAACAGTTTGTAAATGCAGTAGAA----------------------------------------  1308
            ||||||||||||||||||||||||||||||||||                                        
Sbjct 1252  ACTTCAAGAAGAACAGTTTGTAAATGCAGTAGAATAAAAGACTTAGGGGCCACTTATAAATCAAGAAGACGTGA  1325

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1326  TGATTTTTTTCTTTTAATCTCTTTTAATGAAGGCATGCTTGTTTTTTAATCTTAAAGGAGTAAAATTCTTTTTA  1399

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1400  CCTGATAAGTGAGGACAGGGTGTGGAGAAAACATATTAATTACCTCATATCTAAAGTGAAAATTTTTGCAAATC  1473

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1474  CGTACTTGATAGGATTATGATATTACAGGAGCTGGTATGTGATGCCATTCTTTCTTTTTTTTTACCCCGCAACC  1547

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1548  ACTCACCTTCACAGTAGTGATACCATTTCTTAACCTGGAGGATACATGGCATCATTTTTATAAAATATGTTAGT  1621

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1622  AAACCTTTTTGTAAGCCTTAAATGTTATGTGTATTTTTAAAAGCTTAAGAGATTTCAAACCTTATATTCAGAAT  1695

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1696  TGACACCCATGAGAGTGTTTTGTGGTATAGGGTGGTAAACTTGTTCTCTAATCGTATATTAATTCCTCTACCAG  1769

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1770  ATTGTATATTTGAAGCCAGTGTCTTTCCTTTTTTTGTTTTAAGATAGAGCCTCGCTCTGTTGCCCAGGCTGAAG  1843

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1844  TGTAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTACCA  1917

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1918  AGTAGCTGGGATTACAGGTGTGTGGCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGCATTTCACC  1991

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 1992  ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGGGATT  2065

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2066  ACAGGCATGAGCCACCGCACCCGGCCTGCCAGTGTCTTTTTAATACACATGTGTGTTGGTATTTTTAAATTGTT  2139

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2140  ACAGTATCTAGCATATTGCTTACTCTGAATATTCAGTACTTTTTGAATAAGCAAATATTGCTTCCTTGCTTGGA  2213

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2214  ATCATCAGAGTTTAAAGTAGCTTCGTGGATGGACCATGATCCTAAGATGAGTTTTAATTTTGTGTTTACAGTCA  2287

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2288  TCTCTTGTACAACGTGGAGAAGAAAAGATATACTTACTACTTTGCTTCAGGTACACATAAGAAAACCTCTTTTT  2361

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2362  TAAAAAAATTTTTATTTTTTTACATAATAGAGACAGGGGCTCGCTGTAGCTTCCAGGCTGGCCTCAAACTCCTG  2435

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2436  GGCTCAAGCAATCCTCCTGTCTTGGCCTCCCAAAGTGTTGGGATTTCAGGTATGAGACACCACACCTGCCCATT  2509

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2510  TTTGTTTGGTTTTTTAATGGGCAGGTTCTTGCTCTCCCAGGCTGGAGTGCAGTGGTGTAATCACAGCTCACTGC  2583

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2584  AGTCTCGAACTCCTGGACTCAAGCAGTCCTCCCACCTCAGCCTCCTAAAGCACTGGGATTACAGGCTTGAGGCA  2657

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2658  CTGCACCTGGCCCTGACCATTTTTTAAAAAGGTTAGGCTTAGTGCAAAGTTTAAAATTATATGATTCTTAAAAT  2731

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2732  ACTGAATTAGTTTCTAAACTAAACTAGAGGTATAGGTGGACCTGCTTGAGGTATCTTTGTTTTTATGGAACATT  2805

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2806  TTTATTACATGCCTTTATAATTTTTCATTGTTCACACCCTGTACTGAAACCTTTTTCTCAAATACCAACTCTTG  2879

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2880  GCTATGTTAAATTTGTAGACTTTAAAAGATGTTATCTAAATTAATGGTTTAAATATACAAATTGAAAATATTTT  2953

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 2954  CTTTTTAGTGGCAATTTTAAAAGCAGGCCTTAATATGGGACCTGCTTTTAAAGTAAAATATGTGGTACTATGAA  3027

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3028  TTACTAAATTGCTATATACCATGTAATAGTGAGTATAGCTAATATTTAGTATGCCTTTTAAAAATTTTGGACTG  3101

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3102  CTTTTCGGTTTTAACAAATTCTCCACATGTGAACTACTCAAGAAATTTTCCCTTTTTAATTGCCTCTATAGCAC  3175

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3176  TCATAAGAGCTAGGGCATTAGGATAAACTAGAATATTTTATGTTTATGAATACTTGTATAAACTTAAAAGTGTT  3249

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3250  TTGATTTCCCACAATTTCCCAAAGGAATGTTTATTTATTAAGAGTTGTGTTGATAATTTAACTGTTACAATTTC  3323

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3324  AGCAGTTGAATTCAGTGAACACTGGTTGAGGAGTGCCTATTTCTAAGCACTGGGTGTAAGAAGAAAAGACACTT  3397

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3398  GCAAAGGAAGAGCTAAGATTAACATAATTTCTTTGGTTTTTCTATTGCTTGTTATTATTATGTAAAAACTGGGT  3471

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3472  GGCAGTTCACAAGGAAGATTGTTGTAACAGAAGAGTGACAACCAATAGTTTTTTGATCATTAAATCAAATTTTG  3545

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3546  TAAACAGTGGCAGGAGCGTGGACTTAAAACAAGGCTTGCTTATTTGGTTTTGTCAAAGTTTTACGAAAATATAT  3619

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3620  GATATATATTTATACTAAAACTATATAATCCTTAGATTTAGGAAAGCAATCAGTTAATGTCTTTAGCACACTAA  3693

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3694  AGCAGTATTAAACACAGGTACAAGTTGGAAATTGTAGAAAACTGAAAGAAAACAAGACAAAATGTCTATGGTAG  3767

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3768  GGAATAAAAGAGTTTAAGATATTATGTAAAATTATGTGTATTTTCTTCTCTTTTACATAAATTGTTTGTGAAAA  3841

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3842  GTGTGCTCAACTTTTTTACAAGAGTGATATTAACTTGGATTTATTTTTCAATATAATTTGGAGACCCTTTGTTA  3915

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3916  TCCAAATAAAATTGATGAGTTTCTGTGCCTGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGACACTGTTGCA  3989

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 3990  TGCCCCAGAAAGCTTGTGGTGGGTGGTAAGTTCTCACGAGATTTATTTATCTGAGCAACATTGGGACTGAGGGA  4063

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4064  ACATCTGAAAGCTACCATCTTGAAAATTTTTGAGGAAGTGTTTCTGAAATATTTAAAAATACTTAAGTCAGTCA  4137

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4138  TTTTGAACAAAAGAAATTGATACAATAAGTTTTTTTTTTTAAGGATGATTGTCTAATTTTGTAATATGTTGTTT  4211

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4212  TTTAAAAACCTGTCTGATGGTGTTTTATACATTTCTAACTTTTTACCTGAGTTATCTCTTTAGTCTTTTGGAAA  4285

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4286  ATACCCTACACAATACTAACCTTTAAAACTATCAAATTTTTGTTATAAGATAAATGTTATCTTTGTACTAGATA  4359

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4360  GCAACCCTTTATAAGGTTGTAAGGTATAATAAACTGCTTATTTTTTTACATACTTCATATCAAGCATTTTGCAG  4433

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4434  TCCAATTATATAGTTGAGGATGGTGTATTTTGATATGTATGAAGTTAATATTTTCAAGTAAGCAATCAGTCTAC  4507

Query 1309  --------------------------------------------------------------------------  1308
                                                                                      
Sbjct 4508  TACCATCAGATTATAAGCTTTTTTGTAATAATAGGTACATAAAATGTGTATGAAAAATCTACAATAAACATGTT  4581

Query 1309  ---------  1308
                     
Sbjct 4582  TATCTGATA  4590

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