Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_04900
- Subject:
- XR_001743167.1
- Aligned Length:
- 4745
- Identities:
- 1153
- Gaps:
- 3592
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCCCTGGGAGCTGTGTGGCCGCGTGCGCGCTCCGCCGGGGTCCTGGAGGCCTCTGGGCGCGTGCGCGGGCGGTC 74
Query 1 ----------------------------------------------------------ATGAGGCCCGGAGGGG 16
||||||||||||||||
Sbjct 75 GCTACCTGCGGCCGAGCCAGGGAGCGAGAGGGCGCAGAGGGCAGCGGGCTTGGGCAGCATGAGGCCCGGAGGGG 148
Query 17 AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC 90
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 AGCGGCCCGTGGAAGGGGGCGCGTGCAATGGCCGCTCCGAGCTGGAGCTACTGAAGCTGCGCTCGGCGGAGTGC 222
Query 91 ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ATCGACGAGGCGGCCGAGCGGCTGGGGGCCCTGAGCCGCGCGATCTGGAGCCAGCCCGAGCTGGCCTACGAGGA 296
Query 165 GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCACCATGCCCACCGCGTGCTGACGCACTTCTTCGAGCGGGAGCCGCCCGCGGCCTCCTGGGCAGTGCAGCCGC 370
Query 239 ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC 312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACTACCAGCTGCCCACGGCCTTCCGCGCCGAGTGGGAGCCGCCGGAGGCCCGGGCACCGAGCGCCACGCCACGC 444
Query 313 CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCGCTGCACCTGGGCTTCCTCTGCGAGTACGACGCGCTGCCCGGCATCGGCCACGCCTGCGGCCACAACCTCAT 518
Query 387 CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CGCTGAGGTCGGGGCGGCGGCCGCGCTGGGCGTGAGGGGGGCCTTAGAGGGCCTCCCCAGGCCGCCTCCGCCCG 592
Query 461 TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 TGAAGGTAGTTGTCCTGGGAACCCCTGCAGAAGAAGATGGTGGTGGCAAAATTGATTTAATTGAAGCAGGGGCT 666
Query 535 TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TTTACAAATCTTGATGTTGTTTTTATGGCCCACCCATCACAAGAGAATGCTGCTTATCTACCAGATATGGCTGA 740
Query 609 ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACATGATGTGACTGTGAAATACTATGGAAAAGCATCTCATTCTGCTTCTTATCCCTGGGAAGGATTAAATGCAT 814
Query 683 TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT 756
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TAGATGCTGCTGTGCTGGCCTATAACAATCTGTCTGTGTTCAGACAGCAAATGAAACCAACCTGGAGAGTTCAT 888
Query 757 GGTATAATAAAAAATGGTGGTGTAAAACCCAATATCATTCCCTCTTATTCTGAATTAATCTATTACTTCCGTGC 830
|
Sbjct 889 G------------------------------------------------------------------------- 889
Query 831 ACCCTCAATGAAAGAACTTCAAGTTTTGACCAAAAAGGCAGAAGATTGCTTCAGAGCTGCAGCTTTGGCTTCAG 904
Sbjct 890 -------------------------------------------------------------------------- 889
Query 905 GGTGCACAGTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCC 978
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 --------GTGGAAATTAAAGGTGGAGCACATGATTATTACAATGTTCTTCCCAATAAGAGCCTATGGAAAGCC 955
Query 979 TATATGGAAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATC 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TATATGGAAAATGGAAGAAAGCTAGGAATAGAGTTCATTTCAGAAGATACAATGTTGAATGGCCCTTCAGGATC 1029
Query 1053 TACGGATTTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGA 1126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TACGGATTTTGGAAATGTTAGTTTTGTGGTTCCTGGAATTCATCCATATTTTCACATTGGATCTAATGCCTTGA 1103
Query 1127 ATCATACTGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 ATCATACTGAACAGTACACTGAAGCTGCTGGGTCACAGGAAGCTCAGTTCTACACTCTGCGGACGGCCAAAGCT 1177
Query 1201 CTGGCAATGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAA 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CTGGCAATGACGGCACTGGATGTTATTTTTAAACCAGAGTTACTGGAAGGAATCAGAGAGGACTTTAAACTGAA 1251
Query 1275 ACTTCAAGAAGAACAGTTTGTAAATGCAGTAGAA---------------------------------------- 1308
||||||||||||||||||||||||||||||||||
Sbjct 1252 ACTTCAAGAAGAACAGTTTGTAAATGCAGTAGAATAAAAGACTTAGGGGCCACTTATAAATCAAGAAGACGTGA 1325
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1326 TGATTTTTTTCTTTTAATCTCTTTTAATGAAGGCATGCTTGTTTTTTAATCTTAAAGGAGTAAAATTCTTTTTA 1399
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1400 CCTGATAAGTGAGGACAGGGTGTGGAGAAAACATATTAATTACCTCATATCTAAAGTGAAAATTTTTGCAAATC 1473
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1474 CGTACTTGATAGGATTATGATATTACAGGAGCTGGTATGTGATGCCATTCTTTCTTTTTTTTTACCCCGCAACC 1547
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1548 ACTCACCTTCACAGTAGTGATACCATTTCTTAACCTGGAGGATACATGGCATCATTTTTATAAAATATGTTAGT 1621
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1622 AAACCTTTTTGTAAGCCTTAAATGTTATGTGTATTTTTAAAAGCTTAAGAGATTTCAAACCTTATATTCAGAAT 1695
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1696 TGACACCCATGAGAGTGTTTTGTGGTATAGGGTGGTAAACTTGTTCTCTAATCGTATATTAATTCCTCTACCAG 1769
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1770 ATTGTATATTTGAAGCCAGTGTCTTTCCTTTTTTTGTTTTAAGATAGAGCCTCGCTCTGTTGCCCAGGCTGAAG 1843
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1844 TGTAGTGGCACAATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTACCA 1917
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1918 AGTAGCTGGGATTACAGGTGTGTGGCACCATGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGCATTTCACC 1991
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 1992 ATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATGCACCTGCCTCGGCCTCCTAAAGTGCTGGGATT 2065
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2066 ACAGGCATGAGCCACCGCACCCGGCCTGCCAGTGTCTTTTTAATACACATGTGTGTTGGTATTTTTAAATTGTT 2139
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2140 ACAGTATCTAGCATATTGCTTACTCTGAATATTCAGTACTTTTTGAATAAGCAAATATTGCTTCCTTGCTTGGA 2213
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2214 ATCATCAGAGTTTAAAGTAGCTTCGTGGATGGACCATGATCCTAAGATGAGTTTTAATTTTGTGTTTACAGTCA 2287
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2288 TCTCTTGTACAACGTGGAGAAGAAAAGATATACTTACTACTTTGCTTCAGGTACACATAAGAAAACCTCTTTTT 2361
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2362 TAAAAAAATTTTTATTTTTTTACATAATAGAGACAGGGGCTCGCTGTAGCTTCCAGGCTGGCCTCAAACTCCTG 2435
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2436 GGCTCAAGCAATCCTCCTGTCTTGGCCTCCCAAAGTGTTGGGATTTCAGGTATGAGACACCACACCTGCCCATT 2509
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2510 TTTGTTTGGTTTTTTAATGGGCAGGTTCTTGCTCTCCCAGGCTGGAGTGCAGTGGTGTAATCACAGCTCACTGC 2583
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2584 AGTCTCGAACTCCTGGACTCAAGCAGTCCTCCCACCTCAGCCTCCTAAAGCACTGGGATTACAGGCTTGAGGCA 2657
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2658 CTGCACCTGGCCCTGACCATTTTTTAAAAAGGTTAGGCTTAGTGCAAAGTTTAAAATTATATGATTCTTAAAAT 2731
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2732 ACTGAATTAGTTTCTAAACTAAACTAGAGGTATAGGTGGACCTGCTTGAGGTATCTTTGTTTTTATGGAACATT 2805
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2806 TTTATTACATGCCTTTATAATTTTTCATTGTTCACACCCTGTACTGAAACCTTTTTCTCAAATACCAACTCTTG 2879
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2880 GCTATGTTAAATTTGTAGACTTTAAAAGATGTTATCTAAATTAATGGTTTAAATATACAAATTGAAAATATTTT 2953
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 2954 CTTTTTAGTGGCAATTTTAAAAGCAGGCCTTAATATGGGACCTGCTTTTAAAGTAAAATATGTGGTACTATGAA 3027
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3028 TTACTAAATTGCTATATACCATGTAATAGTGAGTATAGCTAATATTTAGTATGCCTTTTAAAAATTTTGGACTG 3101
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3102 CTTTTCGGTTTTAACAAATTCTCCACATGTGAACTACTCAAGAAATTTTCCCTTTTTAATTGCCTCTATAGCAC 3175
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3176 TCATAAGAGCTAGGGCATTAGGATAAACTAGAATATTTTATGTTTATGAATACTTGTATAAACTTAAAAGTGTT 3249
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3250 TTGATTTCCCACAATTTCCCAAAGGAATGTTTATTTATTAAGAGTTGTGTTGATAATTTAACTGTTACAATTTC 3323
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3324 AGCAGTTGAATTCAGTGAACACTGGTTGAGGAGTGCCTATTTCTAAGCACTGGGTGTAAGAAGAAAAGACACTT 3397
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3398 GCAAAGGAAGAGCTAAGATTAACATAATTTCTTTGGTTTTTCTATTGCTTGTTATTATTATGTAAAAACTGGGT 3471
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3472 GGCAGTTCACAAGGAAGATTGTTGTAACAGAAGAGTGACAACCAATAGTTTTTTGATCATTAAATCAAATTTTG 3545
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3546 TAAACAGTGGCAGGAGCGTGGACTTAAAACAAGGCTTGCTTATTTGGTTTTGTCAAAGTTTTACGAAAATATAT 3619
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3620 GATATATATTTATACTAAAACTATATAATCCTTAGATTTAGGAAAGCAATCAGTTAATGTCTTTAGCACACTAA 3693
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3694 AGCAGTATTAAACACAGGTACAAGTTGGAAATTGTAGAAAACTGAAAGAAAACAAGACAAAATGTCTATGGTAG 3767
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3768 GGAATAAAAGAGTTTAAGATATTATGTAAAATTATGTGTATTTTCTTCTCTTTTACATAAATTGTTTGTGAAAA 3841
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3842 GTGTGCTCAACTTTTTTACAAGAGTGATATTAACTTGGATTTATTTTTCAATATAATTTGGAGACCCTTTGTTA 3915
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3916 TCCAAATAAAATTGATGAGTTTCTGTGCCTGTAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAGACACTGTTGCA 3989
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 3990 TGCCCCAGAAAGCTTGTGGTGGGTGGTAAGTTCTCACGAGATTTATTTATCTGAGCAACATTGGGACTGAGGGA 4063
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4064 ACATCTGAAAGCTACCATCTTGAAAATTTTTGAGGAAGTGTTTCTGAAATATTTAAAAATACTTAAGTCAGTCA 4137
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4138 TTTTGAACAAAAGAAATTGATACAATAAGTTTTTTTTTTTAAGGATGATTGTCTAATTTTGTAATATGTTGTTT 4211
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4212 TTTAAAAACCTGTCTGATGGTGTTTTATACATTTCTAACTTTTTACCTGAGTTATCTCTTTAGTCTTTTGGAAA 4285
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4286 ATACCCTACACAATACTAACCTTTAAAACTATCAAATTTTTGTTATAAGATAAATGTTATCTTTGTACTAGATA 4359
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4360 GCAACCCTTTATAAGGTTGTAAGGTATAATAAACTGCTTATTTTTTTACATACTTCATATCAAGCATTTTGCAG 4433
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4434 TCCAATTATATAGTTGAGGATGGTGTATTTTGATATGTATGAAGTTAATATTTTCAAGTAAGCAATCAGTCTAC 4507
Query 1309 -------------------------------------------------------------------------- 1308
Sbjct 4508 TACCATCAGATTATAAGCTTTTTTGTAATAATAGGTACATAAAATGTGTATGAAAAATCTACAATAAACATGTT 4581
Query 1309 --------- 1308
Sbjct 4582 TATCTGATA 4590
