Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05019
Subject:
XM_006516818.3
Aligned Length:
1516
Identities:
1223
Gaps:
116

Alignment

Query    1  ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTCTGG---CTGCGGCTGCG  71
            |||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||   ||..||||.||
Sbjct    1  ATGCGAAACTGGCTGGTGCTGCTGTGCCCTTGCGTGCTCGGGGCCGCGCTGCACCTCTGGCACCTCTGGCTCCG  74

Query   72  CTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTA  145
            .|||||||||..|.||..|..|.|||||.||.||.|.||||||||.|..||||||||||||||.|||||||.||
Sbjct   75  TTCCCCGCCGGACCCCCACAACACCGGGCCCAGCGCGGCAGATCAATCAGCCTTATTTCCTCACTGGAAATTTA  148

Query  146  CTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACC  219
            ..||||||||||||||||||||.|||||.||||||||.||||||||.|||||||||||.||||||||.|.||||
Sbjct  149  GCCACTATGATGTGGTAGTTGGTGTGTTATCAGCTCGAAATAACCACGAACTTCGAAATGTGATAAGGAACACC  222

Query  220  TGGATG-AGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATG  292
            |||.|| ||| |||||||.||.|||||.|||||||||||||||||||||||||||||||||||||||||.|.||
Sbjct  223  TGGCTGAAGA-ATTTGCTGCATCATCCTACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCCCGTG  295

Query  293  GCTGTGAAGTGCCTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTG  366
            ||||||||||||||||||||||||||||.||||||||.|||||...|||.|||||||||||.||||||||||||
Sbjct  296  GCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTACTCCTGCCGACTGCTCAACATCACCAATCCAGTTTTG  369

Query  367  AATCAGGAAATTGAAGCGTTCAGTCTGTCC-GAAGA---CACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCA  436
            |||||.||||||||.||.||||| ||.||| |||||   |.|.|||||..|.||..||||.||.||||||||||
Sbjct  370  AATCAAGAAATTGAGGCATTCAG-CTTTCCTGAAGATGCCTCCTCATCTAGACTCTCTGAAGACCGAGTTGTCA  442

Query  437  GCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGT  510
            |||||||.|||.|||||||||||||.|||||.|||||||||||||||||||||||||||||||.||||||.|||
Sbjct  443  GCGTGAGCTTCAGAGTTCTCTACCCAATCGTGATTACCAGTCTTGGAGTGTTCTACGATGCCAGTGATGTTGGT  516

Query  511  TTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCC  584
            ||.||.|||||||||||.|||||..|.||||||.||||                                    
Sbjct  517  TTTCAAAGGAACATCACAGTCAAGTTGTATCAGACAGA------------------------------------  554

Query  585  TCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTG  658
                           ||||                                             ||||||||||
Sbjct  555  ---------------GCAG---------------------------------------------GAGAGCTTTG  568

Query  659  AAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAAT  732
            |||||||||||||||||||.||||||||.|||||.|||||.|||||.|||||.||.||||.|||||||||||||
Sbjct  569  AAGGTACAATCGTGTGGGAAAGCCAAGATCTCCATGGCCTCGTGTCCAGAAACCTGCACAGAGTGACAGTGAAT  642

Query  733  GATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGA  806
            |||||||||||.||||||||||||.||.||||||||||.||.|||.||||||||||||||.|||||||||||||
Sbjct  643  GATGGAGGGGGTGTTCTCAGAGTCCTTGCAGCTGGGGAAGGGGCACTGCCTCATGAATTCATGGAAGGTGTGGA  716

Query  807  GGGAGTTGCAGGTGGTTTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAA-CCTTCATTCTCGCCCT  879
            |||||||||.|||||.|||||.||.|||.||||||||||||||||.||.||| |.|| ||||.|||||||.||.
Sbjct  717  GGGAGTTGCGGGTGGCTTTATCTACACTGTTCAGGAAGGTGATGCACTATTA-AGAAGCCTTTATTCTCGGCCC  789

Query  880  CAAAGACTTATTGATCATATA-AGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAAAGCAGCATCTATG  952
            ||.||||||...|||||.||| ||| ||||.||.|.||||||||||||||||.|||||||||||||..||.|||
Sbjct  790  CAGAGACTTGCAGATCACATACAGG-ATCTGCAGGTGGAAGATGCCTTACTGCAGGAGGAAAGCAGTGTCCATG  862

Query  953  ATGATATTGTTTTTGTGGATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAACTTCTATAGATGG  1026
            |.||.|||||.||.|||||||||||.||.|||||.||.||||||||||||||||||.|||||||||||||||||
Sbjct  863  ACGACATTGTCTTCGTGGATGTTGTGGATACTTACCGGAATGTTCCTGCAAAATTACTGAACTTCTATAGATGG  936

Query 1027  ACTGTGGAAACAACGAGCTTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATT  1100
            |||||||||.|.||.||||||.|||||.||||.|||||||||||.||||||||.||||||.|.||||||||.||
Sbjct  937  ACTGTGGAATCCACCAGCTTCGATTTGCTGCTCAAGACAGATGACGACTGTTATATAGACTTAGAAGCTGTGTT  1010

Query 1101  TAATAGGATTGTCCAAAAGAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTG  1174
            ||||||.||||..||.||||||||.||||||||||||||||||||||||||||||||..|||||||||||||.|
Sbjct 1011  TAATAGAATTGCTCAGAAGAATCTAGATGGGCCTAATTTTTGGTGGGGAAATTTCAGGTTGAATTGGGCAGTGG  1084

Query 1175  ACCGAACCGGAAAGTGGCAGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATAT  1248
            ||.||||||||||.|||||||||.||||.|||||||||||.|||||||||||||||||||||||||||||.|||
Sbjct 1085  ACAGAACCGGAAAATGGCAGGAGCTGGAATACCCGAGCCCGGCTTACCCTGCCTTTGCATGTGGGTCAGGGTAT  1158

Query 1249  GTGATCTCCAAGGACATCGTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGT  1322
            ||||||||||||||.|||||..|.|||||||||.|||||||..|.|||||||||||||||||||||||||||||
Sbjct 1159  GTGATCTCCAAGGATATCGTTGACTGGCTGGCAGGCAACTCCAGAAGGTTAAAGACCTATCAGGGTGAAGATGT  1232

Query 1323  AAGCATGGGCATCTGGATGGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCT  1396
            .|||||||||||.||||||||.||||||||||||||||||.||||||||||.|||||||||||||||||.||||
Sbjct 1233  CAGCATGGGCATTTGGATGGCAGCCATAGGACCTAAAAGACACCAGGACAGCCTGTGGCTGTGTGAGAAAACCT  1306

Query 1397  GTGAGACAGGAATGCTGTCTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGG  1470
            |||||||||||||||||||||||||||||||.||.||....||.||||...||||.|||.||||||||||.|.|
Sbjct 1307  GTGAGACAGGAATGCTGTCTTCTCCTCAGTACTCACCAGAAGAGCTGAGCAAACTCTGGGAACTGAAGGAGCTG  1380

Query 1471  TGCGGTGATCCTTGTCGATGTCAAGCAAGA------  1500
            ||.||.||||||||||..|||.||||||.|      
Sbjct 1381  TGTGGGGATCCTTGTCAGTGTGAAGCAAAAGTACGA  1416

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.