Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05019
- Subject:
- XR_001736989.1
- Aligned Length:
- 4784
- Identities:
- 1236
- Gaps:
- 3547
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTGGTCGCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGCCCGGCT 148
Query 1 -----------------ATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 57
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTGCACCTC 222
Query 58 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTG---------------------- 109
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGGTGGAGTCTCACTCTTGTT 296
Query 110 -------------------------------------------------------------------------- 109
Sbjct 297 GCCCAGGCTGGAGTGCAATGGCGCGGTCTCGGCTCACCCCAACCTCCACCTCCCGGGTTCAAGAGATTCTCCTG 370
Query 110 ---------------------------CAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 156
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCTCAGCCTCCCAAGTAGCTGGGATAACAGATCAGTTGGCCTTATTTCCTCAGTGGAAATCTACTCACTATGAT 444
Query 157 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTCGAAACGTGATAAGAAGCACCTGGATGAGACA 518
Query 231 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAGTTCATAATAGGTGCTCATGGCTGTGAAGTGC 592
Query 305 CTGTGGAAGACAGGGAAGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 378
||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAACATCACAAATCCAGTTTTGAATCAGGAAATT 666
Query 379 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTGAGGATCGAGTTGTCAGCGTGAGTTTCCGAGT 740
Query 453 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGATGCCAATGATGTGGGTTTCCAGAGGAACATCA 814
Query 527 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCATTGCTCGCTTCAGTCCTCCAAGCTGTGGTGTG 888
Query 601 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCTTACCAGAGAGCTTTGAAGGTACAATCGTGTG 962
Query 675 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCACAAAGTGACAGTGAATGATGGAGGGGGAGTTC 1036
Query 749 TCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATTCTTGGAAGGTGTGGAGGGAGTTGCAGGTGGT 822
||||||||||||||
Sbjct 1037 TCAGAGTCATTACA------------------------------------------------------------ 1050
Query 823 TTTATATATACTATTCAGGAAGGTGATGCTCTCTTACACAACCTTCATTCTCGCCCTCAAAGACTTATTGATCA 896
Sbjct 1051 -------------------------------------------------------------------------- 1050
Query 897 TATAAGGAATCTCCATGAGGAAGATGCCTTACTGAAGGAGGAAAGCAGCATCTATGATGATATTGTTTTTGTGG 970
Sbjct 1051 -------------------------------------------------------------------------- 1050
Query 971 ATGTTGTCGACACTTATCGTAATGTTCCTGCAAAATTATTGAACTTCTATAGATGGACTGTGGAAACAACGAGC 1044
|||||||||||||||||||
Sbjct 1051 -------------------------------------------------------GACTGTGGAAACAACGAGC 1069
Query 1045 TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA 1118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 TTCAATTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAA 1143
Query 1119 GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 GAATCTGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGC 1217
Query 1193 AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC 1266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 AGGAGTTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATC 1291
Query 1267 GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1292 GTCAAGTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGAT 1365
Query 1341 GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GGCTGCCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGT 1439
Query 1415 CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CTTCTCCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGA 1513
Query 1489 TGTCAAGCAAGA-------------------------------------------------------------- 1500
||||||||||||
Sbjct 1514 TGTCAAGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAA 1587
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1588 GTCTGAGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCA 1661
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1662 GAACCAATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGT 1735
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1736 TTTTATTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCT 1809
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1810 GATGCATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCT 1883
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1884 GTAGTAGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATC 1957
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 1958 AGACAAAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAA 2031
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2032 GTTTGGGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGA 2105
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2106 ACCAATATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTT 2179
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2180 CTTTCTGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGA 2253
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2254 GTATGAATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTT 2327
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2328 TGAAAGAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCT 2401
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2402 GGTTATCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCT 2475
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2476 TAGAAATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAA 2549
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2550 GGGACATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCC 2623
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2624 ATTAAAACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAAT 2697
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2698 ATTTAAATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTA 2771
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2772 GGTTCAAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTT 2845
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2846 GTTATACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGG 2919
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2920 TGAACCCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAA 2993
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2994 TCTCCATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTA 3067
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3068 AAATTAGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCA 3141
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3142 CCCCGTCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGT 3215
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3216 TGCTATCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAAC 3289
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3290 TTACTTTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTC 3363
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3364 ACCTTTTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGT 3437
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3438 AAAACTAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTT 3511
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3512 TTGAGACTGACTTACTTACTTACTTAAGTAAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTC 3585
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3586 GGCTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGTGCCCATC 3659
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3660 ACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTC 3733
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3734 CTGACCTCGTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCCCAGCGCCTGGCTGTA 3807
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3808 TCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTACCACCTGTTCA 3881
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3882 TTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACCATTTCAGTAG 3955
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3956 TGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGCGAGTCATTAA 4029
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4030 CGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGACTCAGGTATC 4103
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4104 CTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATGATCTACAAGG 4177
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4178 TCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGACTGCCAGGCA 4251
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4252 TGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAAAGACGGGTTG 4325
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4326 TGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATACAGCAATAGTG 4399
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 4400 TGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAAAAGCTGTGTG 4473
Query 1501 ------------------------------------------------ 1500
Sbjct 4474 TTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA 4521
