Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05389
Subject:
XR_001738718.1
Aligned Length:
4084
Identities:
744
Gaps:
3340

Alignment

Query    1  -----------------------------------ATGGCGCTGTGCGAGGCCGCGGGCTGCGGGAGTGCCCTG  39
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct    1  GCTGGCGGCCCCGCCCCGCCCCGCCCGGCTGCTCCATGGCGCTGTGCGAGGCCGCGGGCTGCGGGAGTGCCCTG  74

Query   40  CTCTGGCCTCGCTTGTTGCTCTTCGGGGACTCCATCACCCAGTTTTCCTTCCAGCAGGGTGGATGGGGAGCATC  113
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CTCTGGCCTCGCTTGTTGCTCTTCGGGGACTCCATCACCCAGTTTTCCTTCCAGCAGGGTGGATGGGGAGCATC  148

Query  114  GCTGGCTGACAGGCTGGTCAGAAAATGTGATGTTCTGAATCGTGGATTTTCAGGTTACAATACCAGGTGGGCCA  187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCTGGCTGACAGGCTGGTCAGAAAATGTGATGTTCTGAATCGTGGATTTTCAGGTTACAATACCAGGTGGGCCA  222

Query  188  AAATTATCCTTCCAAGATTAATCAGGAAAGGAAACAGTTTGGACATCCCAGTAGCAGTTACAATTTTCTTTGGG  261
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AAATTATCCTTCCAAGATTAATCAGGAAAGGAAACAGTTTGGACATCCCAGTAGCAGTTACAATTTTCTTTGGG  296

Query  262  GCCAATGACAGTGCACTAAAAGATGAGAATCCCAAGCAGCACATTCCCCTGGAGGAGTACGCTGCGAACCTAAA  335
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCCAATGACAGTGCACTAAAAGATGAGAATCCCAAGCAGCACATTCCCCTGGAGGAGTACGCTGCGAACCTAAA  370

Query  336  GAGCATGGTGCAGTACCTGAAGTCCGTGGACATCCCTGAGAATCGAGTCATTCTCATCACGCCGACCCCACTTT  409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GAGCATGGTGCAGTACCTGAAGTCCGTGGACATCCCTGAGAATCGAGTCATTCTCATCACGCCGACCCCACTTT  444

Query  410  GTGAAACAGCCTGGGAAGAACAGTGCATCATACAAGGTTGCAAACTAAATCGCCTGAACTCTGTTGTTGGTGAA  483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGAAACAGCCTGGGAAGAACAGTGCATCATACAAGGTTGCAAACTAAATCGCCTGAACTCTGTTGTTGGTGAA  518

Query  484  TATGCCAATGCGTGTTTACAAGTGGCCCAAGACTGTGGGACTGACGTACTTGACCTGTGGACCCTGATGCAGGA  557
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TATGCCAATGCGTGTTTACAAGTGGCCCAAGACTGTGGGACTGACGTACTTGACCTGTGGACCCTGATGCAGGA  592

Query  558  CAGCCAGGACTTCTCATCTTATTTATCAGATGGACTACATTTGTCTCCAAAGGGGAATGAATTTTTGTTCTCGC  631
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGCCAGGACTTCTCATCTTATTTATCAGATGGACTACATTTGTCTCCAAAGGGGAATGAATTTTTGTTCTCGC  666

Query  632  ATCTCTGGCCTTTGATAGAGAAAAAGGTCTCTTCTCTACCTTTGCTGCTTCCTTACTGGCGGGATGTAGCAGAA  705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ATCTCTGGCCTTTGATAGAGAAAAAGGTCTCTTCTCTACCTTTGCTGCTTCCTTACTGGCGGGATGTAGCAGAA  740

Query  706  GCAAAACCTGAATTAAGTCTGCTGGGAGATGGAGACCAT-----------------------------------  744
            |||||||||||||||||||||||||||||||||||||||                                   
Sbjct  741  GCAAAACCTGAATTAAGTCTGCTGGGAGATGGAGACCATTAGCCAATCACAGGAGACCCAAATCTGCTTGTTAT  814

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct  815  CTACAGAACTCAAAGTTGTCAATACGTAGAGCATCGACATAGGGCACACAGCGGCCAGAAAGGTCCCTGCAGCA  888

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct  889  CACCTTGCAGGAGTTGTCAGTTTCTGGAACAGAGAACACGCATTGACAGCTGGATTGTTCTGAGACCTGCCTCT  962

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct  963  CCTCCTGCCTCCTCTTTCCTCCCTGACCATGCTCCCAAAGAGCCTGCCATATGGCCTGAAACTGCAGCAAGAAG  1036

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1037  AAACACCAACAGGATAGGTCTCCCAGGTATGGTGGATCTGCATGCAGAGATGCCTGTCTCCAGACACCACCCTG  1110

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1111  CCCTTCCCCATCCCCTCATCCTCGGCTTGGATCTCACCACTGCTGTCATTCGCACAACCTCCAAATGGAGGAAG  1184

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1185  GGAGCCTGGCAGACAAAGGCCATGTTTTCTCCTGCTGCTGGACTGGGAATAAAACTGCTCACCATTACATGCAC  1258

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1259  AGGACTCCAGCTGCTGTTCCCTCTCGCAGAAAGGGATGCATTTCCCATCCTTACACTTGCCAAGATCCAAGCAA  1332

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1333  ACAGTGTCATCTTCAGCATTTCCTGGAGGCGGGCACTCACTGCTATTACCTGGAAGCAAACACCAGTCATAACA  1406

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1407  AAAAGAATGAGTCACAGGTCCACCAGTTCTACAGGTGCATAATACGCTGTTTCTCATACAAGTGAGCATCTTAC  1480

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1481  CTTGCAAAAGCAAAAAGTGACCTACAGAGCTAGGACAAGAGCCTGCATCTCACCAGCAATCAGCATTTAAATGG  1554

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1555  GAGTGCCTGGCTATGTGCCAGGCTAGGCTGCATGAGTCCCTGGCCTCCCAAGCCCCAGTTAGAATGCATGGTCT  1628

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1629  CCACTTCTGCATCTCACAGTCATATATAAAAGAATATCCTATGTGCTATTACTTAGAATAAATTGCAAACTTTG  1702

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1703  TATGAAGGCTTAAAAGAACTCCACGGCCTTCCCTATCTGGCCCTGACTTCATCGCACACAACTCTCCCACAGCC  1776

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1777  CACTGCTTTGGCTATGACAACCTCCATTCAGTTCCTTCAATATTAACAGATACTATTCCTTCTACCTGGAATGC  1850

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1851  TGGTGTTTCCACTCTTTTGGGGCAATTAGCTGGCTTTTCTTATGGATTAAGTTTTGTCTCAAAGGTTTTCTGAG  1924

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1925  ATATCCCTGAGGATGCTAAGTTGATGTGGCCTCCCACTTCCATTATGCACTATCACACTCCTTCTCTCCTTCAT  1998

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 1999  TGCATATGTTTTGCAATTTATATATATATATTTAATGTTATTTTCTGTTTTCCCTCTACTAGACTGGAAAGCCC  2072

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2073  CATGACAGCAATGATCAAATCTATTAAGTTATCTCCAATCCCTATCATATTATAGGTATACTACAAATATTTCT  2146

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2147  TAAATAAATCAATTATTCTTTTTATTTTTCTTTTGAGACAGGGTCTCAGTCTGTCACCCAGGCTGGAAGGCAGG  2220

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2221  GGTGTGATCATAGCTTACTGCAGCCTCAAACTCCTAGGTTCCGGCAATCCTCCTGCCTCAGCCTCACAAGTACC  2294

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2295  TAGGATTTCAGGCGTACGCCACCATACCTGGCTAATTTTCTTTCTTTTTTTTTGAGAGACGAGATCTCCCTGTG  2368

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2369  TTGACCATGCTGGTGTAAAACTGCTGGGCTCAAGGGATCCTCCCACCTTGGCCTTCCAAGTGCTGGAATGATAG  2442

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2443  GCATGAGCCACTGTGCCCAGGCCAATAATGCCAAAGAAAACCCACCAAAGAAAGTTAAACTGGGAGAGACAGGA  2516

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2517  TGGAATGAGTGAATCATTCTGGAAAATGAATAGCACAAGTAGCTAAAAGTCAACACAAATAGAGGAGGAGAAAA  2590

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2591  AAAACACTTTATGAAAGCAATGGACTATATATCCACAGCTCTGGACTGGCCTTTCAGCTGAAGAATGAAGCCAA  2664

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2665  TCAAAAGAATTCTGACTTAGAGGGTTTCAGAGCAGTAACACAAAATGTACAGAAAATCTGGCCAGTTTCAAACA  2738

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2739  AAAGTGATGGTTTATTAAGTACCCAACAGATAACCAGGCACTTTGCCTCTGGTTCTCATAAAACCTTTCATGAG  2812

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2813  CACTGGGCATTCATCATGTCAACAGTCATTTAACAAACTATTACTGAAAGTATGATGTCCAGTGAGCTCAGGGA  2886

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2887  AGGTTTATATTGTGGATCATTATTGTATTTTTGGTATATGATACTGCCCTGATACATTAAAAAATGCTCAATAA  2960

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 2961  ATATCTGTTGAGCATCTGTTCTTAAAAGACTAAAGTCAGAGTATTAGACAGGTAGGAAAATAATTCTGAAAATG  3034

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3035  GTATCATCTATCTAGCATGGTCCCCAAAGTTTAGCATGCATGGAAATCACCTGACAGAAGGTTACACAGCACAG  3108

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3109  ACTGCTGGCCTCCCTTCCCACATTTTTTGATGCAGTAGATCCAGGGAGGGGACTGACAATTTCCATTTCTAATA  3182

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3183  AGCTCCCAGGTGATGCTGCTGCTGCTGGTTGTGAAATGCTAATTGCTTTTTTTCTTTCTTCTTCTTTTTTTTTT  3256

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3257  TTTTTTTTGAGGTTGTTGTTCTCTAGCTTTTCCTGCTAGAAAATACTGATTCCTTATCAGGAACTTATCCTCTG  3330

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3331  CTATCTACTATTTTGTATAAAATATCAAGGGAACAAAAGGCTGTTTGATAAGAACAAACGTTTTCAAATTGTTT  3404

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3405  TACTTACGTTTATTTAAAAGAAAGCATTTTTCTCAATCTATTTTATTATTACAGTGAAGATGAAACATTGAGCA  3478

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3479  TAGCTAGCAAATGCTTCTTTAAAGCTTGATTTAGATATTCAGGTTCCTAACATTTGTTTTTTTGGTTTTTTTTT  3552

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3553  GAGATGGAGTCTTGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCCGCCTCC  3626

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3627  CGGGTTCACGCCATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCACGCCCAGCTA  3700

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3701  ATTTTTTGTATCTTTTAGTAGACACAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGATCTCGTGA  3774

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3775  TCTGCCCACCTCGGCCTCCCAAAGTGCTAGGATTACAGGTGTGAGCCACTGTGCCGGGCCATCAGGTTCCTAAC  3848

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3849  ATTTGGCAAAGTAATGTGATAGTGACAGATCCCAAAAGATAAAAACATGGGCAACATGTCATACTATGCACACG  3922

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3923  GAAAACCAAAATCAAGCCAAAATAGGACACAACTTCATTCACTAGGTCCCTGAAGACCTCCAGCTTTCTGTTTG  3996

Query  745  --------------------------------------------------------------------------  744
                                                                                      
Sbjct 3997  CATCCTTATCACAAAACCTAGGATAGTTACAATAAAAAAGATAACAAGTGTTGGTGAGGATATGGAGAAGCTGG  4070

Query  745  --------------  744
                          
Sbjct 4071  GACCCTCATACAAT  4084

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.