Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_05405
• Subject: XM_017009384.1
• Aligned Length: 2081
• Identities: 1156
• Gaps: 898

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGACAAGGGAGAAAAACTTTCCCACGGTTCCGTCTGGCCCGCGGCGCTTGTCTGCCTGCGCGGGGTCAAAGCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGGCGCCGCCCACGCGCGGCTCGGGTGGGAACCCGCAGACGTGGGGCGAGCAGGGCCGCTGGCTGTGGCGGGCG  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGCGCCGGGGCGCCACGTCCGAGGCCGCGGGGTCGGGGCTGCAGGCACAGCTCGAGCGCTTTCCGCGGGGTTTG  222

Query    1  --------------------------------AT-----------GAAAAGAAGCAAAGAATTGATAACTAAAA  31
                                            ||           ||...|.|||                   
Sbjct  223  GCTCCTGTCGCTTCCCGTCTCGCCGAACCGGCATCGCCGCCGCCGGAGCCGCAGC-------------------  277

Query   32  ATCATAGTC--AAGAGGAAACAAGTATTCTTCGTTGTTGGAAATGTAGAAAATGTATAGC------AAGCTCTG  97
                .||||  .||||            |.|.|.||.||                   ||      .|||.|.|
Sbjct  278  ----GAGTCCTCAGAG------------CCTGGCTGCTG-------------------GCGGCCGGGAGCGCCG  316

Query   98  GTTGTTTTATGGA--------GTATCTTGAGAATC----AAGT-GATTAAGGATAAAGATGATTCAGTTGATGC  158
                      |||        |.|.|..|||..||    |.|| |||..|||||||||||||||||||||||||
Sbjct  317  ----------GGACGGGGCGCGAAGCCGGAGGCTCCGGGACGTGGATACAGGATAAAGATGATTCAGTTGATGC  380

Query  159  TCAAAATATTTGTCATGTGTGGCACATGAATGTAGAAGCCCTTCCAGAATGGATAAGCTGCCTAATCCAAAAAG  232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  381  TCAAAATATTTGTCATGTGTGGCACATGAATGTAGAAGCCCTTCCAGAATGGATAAGCTGCCTAATCCAAAAAG  454

Query  233  CCCAGTGGACAGTTGGAAAACTGAATTGTCCTTTCTGTGGGGCCCGTTTAGGGGGCTTTAATTTTGTCAGCACT  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  455  CCCAGTGGACAGTTGGAAAACTGAATTGTCCTTTCTGTGGGGCCCGTTTAGGGGGCTTTAATTTTGTCAGCACT  528

Query  307  CCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTCCAAGAGCCGGACTGATTATCAGCCAACACAGGC  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  529  CCAAAATGTTCCTGTGGCCAGCTTGCAGCTGTACATCTCTCCAAGAGCCGGACTGATTATCAGCCAACACAGGC  602

Query  381  AGGCAGACTAATGAGACCATCAGTGAAATACTTGTCACATCCTAGAGTTCAGTCAGGTTGTGACAAGGAAGCTC  454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  603  AGGCAGACTAATGAGACCATCAGTGAAATACTTGTCACATCCTAGAGTTCAGTCAGGTTGTGACAAGGAAGCTC  676

Query  455  TGCTGACAGGTGGTGGCTCTGAAAACAGAAATCACAGGCTTTTAAACATGGCCCGAAATAATAATGACCCTGGA  528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  677  TGCTGACAGGTGGTGGCTCTGAAAACAGAAATCACAGGCTTTTAAACATGGCCCGAAATAATAATGACCCTGGA  750

Query  529  AGATTAACAGAAGCACTCTGCCTGGAGGTGCGACCAACATATTTTGAGATGAAGAACGAAAAACTGCTGTCCAA  602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751  AGATTAACAGAAGCACTCTGCCTGGAGGTGCGACCAACATATTTTGAGATGAAGAACGAAAAACTGCTGTCCAA  824

Query  603  AGCATCAGAACCAAAATACCAGCTTTTTGTTCCCCAGCTTGTGACTGGCAGATGCGCTACAAGAGCTTTTCATA  676
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  825  AGCATCAGAACCAAAATACCAGCTTTTTGTTCCCCAGCTTGTGACTGGCAGATGCGCTACAAGAGCTTTTCATA  898

Query  677  GAAAATCACATAGTTTGGATCTGAACATCAGTGAGAAACTGACTTTATTACCCACTTTATATGAAATACATAGT  750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  899  GAAAATCACATAGTTTGGATCTGAACATCAGTGAGAAACTGACTTTATTACCCACTTTATATGAAATACATAGT  972

Query  751  AAGACTACTGCCTATTCCAGACTAAATGAAACACAGCCTATTGACCTTTCAGGCTTGCCTTTACAATCTAGTAA  824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  973  AAGACTACTGCCTATTCCAGACTAAATGAAACACAGCCTATTGACCTTTCAGGCTTGCCTTTACAATCTAGTAA  1046

Query  825  AAATAGCTATTCCTTTCAGAATCCATCCAGTTTTGATCCTAGTATGCTGCTGCAAAGATTTTCAGTGGCCCCCC  898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047  AAATAGCTATTCCTTTCAGAATCCATCCAGTTTTGATCCTAGTATGCTGCTGCAAAGATTTTCAGTGGCCCCCC  1120

Query  899  ATGAGACCCAGACACAAAGAGGAGGAGAATTTCAGTGTGGTCTAGAAGCTGCTTCAGTGTATTCTGACCATACT  972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121  ATGAGACCCAGACACAAAGAGGAGGAGAATTTCAGTGTGGTCTAGAAGCTGCTTCAGTGTATTCTGACCATACT  1194

Query  973  AATACTAACAATCTGACTTTCCTGATGGACCTGCCCTCAGCTGGCAGGAGCATGCCGGAGGCCTCAGACCAGGA  1046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195  AATACTAACAATCTGACTTTCCTGATGGACCTGCCCTCAGCTGGCAGGAGCATGCCGGAGGCCTCAGACCAGGA  1268

Query 1047  AGAGCACCTCTCCCCTCTGGACTTCCTGCACTCAGCCAATTTTTCATTGGGCAGCATTAATCAGAGGCTTAATA  1120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269  AGAGCACCTCTCCCCTCTGGACTTCCTGCACTCAGCCAATTTTTCATTGGGCAGCATTAATCAGAGGCTTAATA  1342

Query 1121  AGAGAGAAAGGAGCAAGTTGAAGAATCTAAGAAGGAAACAACGAAGGCGTGAAAGATGGCTACAGAAGCAGGGT  1194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1343  AGAGAGAAAGGAGCAAGTTGAAGAATCTAAGAAGGAAACAACGAAGGCGTGAAAGATGGCTACAGAAGCAGGGT  1416

Query 1195  AAATACTCAGGAGTGGGATTGCTGGATCATATGGTAAGTATATATTT-----ACTT---ATA------------  1248
            |||||||||||||||||||||||||||||||||.|...| |||.|||     ||||   |||            
Sbjct 1417  AAATACTCAGGAGTGGGATTGCTGGATCATATGTTTTCT-TATGTTTTGCAGACTTTGAATAATGAGATGAGTA  1489

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1490  CAGATGAAGACAATGAATATGCAGAAGAAAAGGATAGCTACATCTGTGCAGTGTGTCTGGACGTTTATTTCAAC  1563

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1564  CCTTATATGTGTTACCCTTGCCATCACATCTTCTGTGAGCCCTGCTTACGGACTCTGGCCAAAGACAATCCTTC  1637

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1638  AAGCACTCCATGCCCATTGTGTCGGACAATTATTTCTAGAGTCTTTTTCCAAACAGAATTGAACAATGCCACAA  1711

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1712  AAACTTTCTTTACTAAAGAATATTTGAAAATAAAACAAAGCTTTCAGAAATCCAACTCTGCAAAATGGCCCCTA  1785

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1786  CCAAGCTGCAGAAAAGCATTTCATCTTTTTGGAGGTTTCCGCAGACATGCAGCTCCAGTTACAAGAAGGCAGTT  1859

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1860  CCCACACGGTGCACACAGGATGGATTACCTGCACTTTGAGGATGATAGCCGTGGATGGTGGTTTGACATGGATA  1933

Query 1249  --------------------------------------------------------------------------  1248
                                                                                      
Sbjct 1934  TGGTGATCATATATATTTATTCAGTGAACTGGGTCATTGGATTCATTGTTTTCTGCTTTCTTTGCTATTTTTTC  2007

Query 1249  ---------  1248
                     
Sbjct 2008  TTTCCGTTT  2016