Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_05419
Subject:
NR_148401.1
Aligned Length:
3409
Identities:
1139
Gaps:
2225

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGAATAAGAATAAAAGATTCTGGAGGAG  148

Query    1  -----------------------------------------------ATGCACAATTTTGAGGAAGAGTTAACT  27
                                                           |||||||||||||||||||||||||||
Sbjct  149  TTGGAGAAGAGTGTATTCAGCCCCCAAACCACGAGATCAACAAAGAAATGCACAATTTTGAGGAAGAGTTAACT  222

Query   28  TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT  101
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT  296

Query  102  GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT  175
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT  370

Query  176  GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT  249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT  444

Query  250  GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA  323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA  518

Query  324  CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG  397
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG  592

Query  398  ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG  471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG  666

Query  472  ACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA  545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  ACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA  740

Query  546  GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC  619
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC  814

Query  620  TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG  693
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG  888

Query  694  CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA  767
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA  962

Query  768  TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG  841
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG  1036

Query  842  TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG  915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG  1110

Query  916  AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGTA----AG-----------------------GAT--  960
            ||||||||||||||||||||||||||||||||||||||.|    ||                       |||  
Sbjct 1111  AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTC  1184

Query  961  -GAAAAGG-----------------AAGTTG--AATTTTTAAAAATTTTAAAC--ATTGTTGTAGTTACATTAA  1012
             |||||||                 |||..|  |||..|||||..|.||.|||  |.||.|..||||       
Sbjct 1185  AGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTT-------  1251

Query 1013  TTTCAGT--AA---TACTGATGTCGATACTCTTTTTCAA--------CCAACAC--------ATCATAACCTTT  1065
            ||.||||  ||   |..|||||.|..||    ||||.||        ..|||.|        |||.||    ||
Sbjct 1252  TTGCAGTGGAAAGCTCATGATGGCATTA----TTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTA----TT  1317

Query 1066  TTA------AGTGAAATCACTTTAA--------TATG-----GTT-----------------------------  1091
            |||      .|||||  .|||.|||        ||||     |||                             
Sbjct 1318  TTATCTGCTGGTGAA--GACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCT  1389

Query 1092  -----------------TTCTGAAGCCT---CTC------------TAT---CTGTT------TACCAAAGTTT  1124
                             |||.|..||||   |||            |||   |||||      |..||.|.|||
Sbjct 1390  CATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTT  1463

Query 1125  ATC----------TAACA-------GTC---TGCATAAGGTAA-------------AGAAT-----ATACTGTG  1160
            | |          |||.|       |||   |||||.||..||             ||.||     |||.||  
Sbjct 1464  A-CGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTG--  1534

Query 1161  TCACATTTTCTAT--------------TTGTTGAA------GGAA--------------TTTG----TGTGG--  1194
               |||..|||||              |||.||.|      ||||              ||||    |||||  
Sbjct 1535  ---CATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTG  1605

Query 1195  -------------------AAAATAGTTTC-----CCAT-----------------------------------  1209
                               |||||  ||||     .|||                                   
Sbjct 1606  GAACAACATTGGGAGTGGAAAAAT--TTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTT  1677

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 1678  CTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGT  1751

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 1752  TGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAG  1825

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 1826  AAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATAT  1899

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 1900  TCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGT  1973

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 1974  GTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAA  2047

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2048  CCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAA  2121

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2122  GGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATT  2195

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2196  TGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCC  2269

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2270  TTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTG  2343

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2344  CCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCA  2417

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2418  AGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAAT  2491

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2492  ATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGT  2565

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2566  CTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGA  2639

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2640  TAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTA  2713

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2714  GTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATT  2787

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2788  AATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTA  2861

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2862  CCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCC  2935

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 2936  AAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGC  3009

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 3010  CAATCCAGCAAGAGTATAGGTTTAAAGCCCTAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACAC  3083

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 3084  GTTCTGATTAACCAAGGGGCGTGTCACAGAACAGGAAACTGATACAATGACACTTGTTTCTTAAGAGAAGCTGA  3157

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 3158  TTGAATCCTGTAGCACATTACTGCACAATTAATGGCTTTAAACGAGTTACAAGTCGTAAGTTCTTATGTTTTGG  3231

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 3232  ATCATGTTGTGGAATGTATTCCAAATGAAAAATGGAGGAGAAAGTGCACAACATCATATGCTTCATGGTATGGC  3305

Query 1210  --------------------------------------------------------------------------  1209
                                                                                      
Sbjct 3306  ATATACATGTCAATTATTTTTACATATAACTGTGATGAATGATACAATTAAAAGCTATACTACAAAAAAAAAAA  3379

Query 1210  -----  1209
                 
Sbjct 3380  AAAAA  3384

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