Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05419
- Subject:
- NR_148401.1
- Aligned Length:
- 3409
- Identities:
- 1139
- Gaps:
- 2225
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGCACCTGAAGCCCTTCGGGGCAGAGGAGGGCGGGGACTCGGGGCGGCTCTCAGCATCCGCCTGGAGCTCGTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGCTGTGTTTCCGTGCTGTGGAGTTGCCTGGTCCGCTTCCTCCCCGCGAATAAGAATAAAAGATTCTGGAGGAG 148
Query 1 -----------------------------------------------ATGCACAATTTTGAGGAAGAGTTAACT 27
|||||||||||||||||||||||||||
Sbjct 149 TTGGAGAAGAGTGTATTCAGCCCCCAAACCACGAGATCAACAAAGAAATGCACAATTTTGAGGAAGAGTTAACT 222
Query 28 TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGTCCCATATGTTATAGTATTTTTGAAGATCCTCGTGTACTGCCATGCTCTCATACATTTTGTAGAAATTGTTT 296
Query 102 GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GGAAAACATTCTTCAGGCATCTGGTAACTTTTATATATGGAGACCTTTACGAATTCCACTCAAGTGCCCTAATT 370
Query 176 GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCAGAAGTATTACTGAAATTGCTCCAACTGGCATTGAATCTTTACCTGTTAATTTTGCACTAAGGGCTATTATT 444
Query 250 GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GAAAAGTACCAGCAAGAAGACCATCCAGATATTGTCACCTGCCCTGAACATTACAGGCAACCATTAAATGTTTA 518
Query 324 CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTGTCTATTAGATAAAAAATTAGTTTGTGGTCATTGCCTTACCATAGGTCAACATCATGGTCATCCTATAGATG 592
Query 398 ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ACCTTCAAAGTGCCTATTTGAAAGAAAAGGACACTCCTCAAAAACTGCTTGAACAGTTGACTGACACACACTGG 666
Query 472 ACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACAGATCTTACCCATCTTATTGAAAAGCTGAAAGAACAAAAATCTCATTCTGAGAAAATGATCCAAGGCGATAA 740
Query 546 GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GGAAGCTGTTCTCCAGTATTTTAAGGAGCTTAATGATACATTAGAACAGAAAAAAAAAAGTTTCCTAACGGCTC 814
Query 620 TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG 693
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCTGTGATGTTGGCAATCTAATTAATCAAGAATATACTCCACAAATTGAAAGAATGAAGGAAATACGAGAGCAG 888
Query 694 CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGCTTGAATTAATGGCACTGACAATATCTTTACAAGAAGAGTCTCCACTTAAATTTCTTGAAAAAGTTGATGA 962
Query 768 TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGTACGCCAGCATGTACAGATCTTGAAACAAAGACCACTTCCTGAGGTTCAACCCGTTGAAATTTATCCTCGAG 1036
Query 842 TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG 915
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TAAGCAAAATATTGAAAGAAGAATGGAGCAGAACAGAAATTGGACAAATTAAGAACGTTCTCATTCCCAAAATG 1110
Query 916 AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGTA----AG-----------------------GAT-- 960
||||||||||||||||||||||||||||||||||||||.| || |||
Sbjct 1111 AAAATTTCTCCAAAAAGGATGTCATGTTCCTGGCCTGGAACACCAGTGTATTCAGTAGCGTGGGGCCCTGATTC 1184
Query 961 -GAAAAGG-----------------AAGTTG--AATTTTTAAAAATTTTAAAC--ATTGTTGTAGTTACATTAA 1012
||||||| |||..| |||..|||||..|.||.||| |.||.|..||||
Sbjct 1185 AGAAAAGGTTCTTTATACAGCAGGCAAGCAGCTAATCATTAAACCTCTTCAACCAAATGCTAAAGTT------- 1251
Query 1013 TTTCAGT--AA---TACTGATGTCGATACTCTTTTTCAA--------CCAACAC--------ATCATAACCTTT 1065
||.|||| || |..|||||.|..|| ||||.|| ..|||.| |||.|| ||
Sbjct 1252 TTGCAGTGGAAAGCTCATGATGGCATTA----TTTTAAAAGTAGATTGGAACTCGGTCAATGATCTTA----TT 1317
Query 1066 TTA------AGTGAAATCACTTTAA--------TATG-----GTT----------------------------- 1091
||| .||||| .|||.||| |||| |||
Sbjct 1318 TTATCTGCTGGTGAA--GACTGTAAATATAAGGTATGGGATAGTTACGGCCGCCCACTGTACAATTCACAACCT 1389
Query 1092 -----------------TTCTGAAGCCT---CTC------------TAT---CTGTT------TACCAAAGTTT 1124
|||.|..|||| ||| ||| ||||| |..||.|.|||
Sbjct 1390 CATGAGCATCCCATTACTTCAGTTGCCTGGGCTCCAGATGGAGAATTATTTGCTGTTGGATCGTTTCATACTTT 1463
Query 1125 ATC----------TAACA-------GTC---TGCATAAGGTAA-------------AGAAT-----ATACTGTG 1160
| | |||.| ||| |||||.||..|| ||.|| |||.||
Sbjct 1464 A-CGCTTGTGTGATAAAACTGGGTGGTCATATGCATTAGAAAAACCCAACACTGGCAGCATATTTAATATTG-- 1534
Query 1161 TCACATTTTCTAT--------------TTGTTGAA------GGAA--------------TTTG----TGTGG-- 1194
|||..||||| |||.||.| |||| |||| |||||
Sbjct 1535 ---CATGGTCTATCGATGGCACTCAGATTGCTGGAGCCTGTGGAAATGGACATGTCGTTTTTGCACATGTGGTG 1605
Query 1195 -------------------AAAATAGTTTC-----CCAT----------------------------------- 1209
||||| |||| .|||
Sbjct 1606 GAACAACATTGGGAGTGGAAAAAT--TTTCAAGTAACATTAACGAAAAGAAGAGCCATGCAGGTTCGTAATGTT 1677
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1678 CTTAATGATGCAGTGGATTTACTGGAATTCCGTGATAGAGTCATTAAAGCATCTTTGAACTATGCACACTTAGT 1751
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1752 TGTTTCAACGTCTCTTCAATGTTACGTGTTCTCCACGAAGAACTGGAACACACCAATTATATTTGATCTCAAAG 1825
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1826 AAGGAACTGTTAGTTTGATTCTGCAGGCAGAAAGACATTTTCTTCTTGTAGATGGTAGTAGTATCTATTTATAT 1899
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1900 TCATATGAAGGGCGCTTTATTTCATCTCCAAAATTTCCTGGAATGAGAACAGATATTCTGAATGCACAGACTGT 1973
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 1974 GTCTTTGAGTAATGATACCATAGCAATAAGAGACAAAGCTGATGAAAAAATAATCTTCCTCTTTGAGGCATCAA 2047
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2048 CCGGAAAGCCGTTAGGTGATGGAAAGTTTCTTTCTCATAAGAATGAAATCTTGGAAATTGCTCTGGATCAAAAA 2121
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2122 GGACTTACCAATGATAGAAAAATTGCTTTCATTGATAAAAATAGAGATCTCTGTATCACTTCTGTGAAACGATT 2195
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2196 TGGGAAGGAAGAACAAATTATCAAGCTTGGAACAATGGTGCATACTTTGGCATGGAACGATACATGCAATATCC 2269
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2270 TTTGTGGACTTCAAGATACTCGATTTATAGTGTGGTATTACCCCAATACAGTTTATGTGGACAGAGACATTTTG 2343
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2344 CCTAAAACATTATATGAAAGGGATGCAAGTGAATTTAGTAAAAATCCCCATATTGTGAGTTTTGTTGGAAATCA 2417
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2418 AGTAACTATTAGAAGAGCTGATGGCTCCCTGGTTCACATCAGCATAACACCATATCCTGCTATTCTCCATGAAT 2491
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2492 ATGTAAGCAGTTCAAAATGGGAAGATGCTGTGAGACTTTGTCGCTTTGTTAAGGAGCAAACCATGTGGGCTTGT 2565
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2566 CTAGCTGCTATGGCAGTTGCTAATCGAGATATGACTACTGCAGAAATAGCCTATGCAGCAATTGGTGAAATTGA 2639
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2640 TAAGGTTCAGTACATCAATTCTATAAAAAATCTTCCATCTAAAGAATCAAAAATGGCCCACATACTACTGTTTA 2713
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2714 GTGGGAACATACAGGAGGCTGAAATAGTACTTCTTCAGGCTGGCCTTGTTTATCAAGCAATCCAGATCAATATT 2787
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2788 AATCTCTACAACTGGGAAAGGGCACTGGAATTGGCTGTAAAATACAAAACACATGTTGATACAGTTCTTGCTTA 2861
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2862 CCGTCAAAAGTTTTTGGAGACATTTGGTAAACAGGAAACTAATAAACGATACTTGCATTATGCAGAAGGTCTCC 2935
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 2936 AAATAGATTGGGAGAAAATCAAAGCCAAAATTGAGATGGAAATTACAAAAGAAAGAGAGCAATCATCAAGCAGC 3009
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3010 CAATCCAGCAAGAGTATAGGTTTAAAGCCCTAAATGCCATGCGTATCTTTAAGAAATTTTATCTTTTGAAACAC 3083
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3084 GTTCTGATTAACCAAGGGGCGTGTCACAGAACAGGAAACTGATACAATGACACTTGTTTCTTAAGAGAAGCTGA 3157
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3158 TTGAATCCTGTAGCACATTACTGCACAATTAATGGCTTTAAACGAGTTACAAGTCGTAAGTTCTTATGTTTTGG 3231
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3232 ATCATGTTGTGGAATGTATTCCAAATGAAAAATGGAGGAGAAAGTGCACAACATCATATGCTTCATGGTATGGC 3305
Query 1210 -------------------------------------------------------------------------- 1209
Sbjct 3306 ATATACATGTCAATTATTTTTACATATAACTGTGATGAATGATACAATTAAAAGCTATACTACAAAAAAAAAAA 3379
Query 1210 ----- 1209
Sbjct 3380 AAAAA 3384
