Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_05811
• Subject: XM_006715689.4
• Aligned Length: 3676
• Identities: 2057
• Gaps: 1592

Alignment

Query    1  ATGGCCGACATCAAGACGGGCATCTTCGCCAAGAACGTCCAGAAGCGACTCAACCGCGCGCAGGAAAAGGTCCT  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCCGACATCAAGACGGGCATCTTCGCCAAGAACGTCCAGAAGCGACTCAACCGCGCGCAGGAAAAGGTCCT  74

Query   75  CCAAAAGCTGGGGAAAGCTGATGAGACAAAAGACGAACAGTTCGAAGAATATGTCCAGAACTTCAAACGGCAAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CCAAAAGCTGGGGAAAGCTGATGAGACAAAAGACGAACAGTTCGAAGAATATGTCCAGAACTTCAAACGGCAAG  148

Query  149  AAGCAGAGGGTACCAGACTTCAGCGAGAACTCCGAGGATATTTAGCAGCAATCAAAGGCATGCAGGAGGCCTCC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  AAGCAGAGGGTACCAGACTTCAGCGAGAACTCCGAGGATATTTAGCAGCAATCAAAGGCATGCAGGAGGCCTCC  222

Query  223  ATGAAGCTCACAGAGTCGCTGCATGAAGTCTATGAGCCTGACTGGTATGGGCGGGAAGATGTGAAAATGGTTGG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATGAAGCTCACAGAGTCGCTGCATGAAGTCTATGAGCCTGACTGGTATGGGCGGGAAGATGTGAAAATGGTTGG  296

Query  297  TGAGAAATGTGATGTGCTGTGGGAAGACTTCCATCAAAAACTCGTGGATGGGTCCTTGCTAACACTGGATACCT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGAGAAATGTGATGTGCTGTGGGAAGACTTCCATCAAAAACTCGTGGATGGGTCCTTGCTAACACTGGATACCT  370

Query  371  ACCTGGGGCAATTTCCTGACATAAAGAATCGCATCGCCAAGCGCAGCAGGAAGCTAGTGGACTATGACAGTGCC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  ACCTGGGGCAATTTCCTGACATAAAGAATCGCATCGCCAAGCGCAGCAGGAAGCTAGTGGACTATGACAGTGCC  444

Query  445  CGCCACCATCTGGAAGCTCTGCAGAGCTCCAAGAGGAAGGATGAGAGTCGAATCTCTAAGGCAGAAGAAGAATT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGCCACCATCTGGAAGCTCTGCAGAGCTCCAAGAGGAAGGATGAGAGTCGAATCTCTAAGGCAGAAGAAGAATT  518

Query  519  TCAGAAAGCACAGAAAGTGTTTGAAGAGTTTAACGTTGACTTACAAGAAGAGTTACCATCATTATGGTCAAGAC  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TCAGAAAGCACAGAAAGTGTTTGAAGAGTTTAACGTTGACTTACAAGAAGAGTTACCATCATTATGGTCAAGAC  592

Query  593  GAGTTGGATTTTATGTTAATACTTTCAAAAACGTCTCCAGCCTTGAAGCCAAGTTTCATAAGGAAATTGCGGTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GAGTTGGATTTTATGTTAATACTTTCAAAAACGTCTCCAGCCTTGAAGCCAAGTTTCATAAGGAAATTGCGGTG  666

Query  667  CTTTGCCACAAACTGTATGAAGTGATGACAAAACTGGGTGACCAGCACGCCGACAAGGCCTTCACCATCCAAGG  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTTTGCCACAAACTGTATGAAGTGATGACAAAACTGGGTGACCAGCACGCCGACAAGGCCTTCACCATCCAAGG  740

Query  741  AGCGCCCAGTGATTCGGGTCCTCTCCGCATTGCAAAGACACCATCACCGCCTGAGGAGCCTTCACCCCTCCCGA  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGCGCCCAGTGATTCGGGTCCTCTCCGCATTGCAAAGACACCATCACCGCCTGAGGAGCCTTCACCCCTCCCGA  814

Query  815  GCCCGACAGCAAGTCCAAATCATACATTAGCACCTGCGTCTCCCGCACCAGCACGGCCTCGGTCACCTTCACAG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GCCCGACAGCAAGTCCAAATCATACATTAGCACCTGCGTCTCCCGCACCAGCACGGCCTCGGTCACCTTCACAG  888

Query  889  ACAAGGAAAGGGCCTCCTGTCCCACCTCTACCTAAAGTCACCCCGACAAAGGAACTGCAGCAGGAGAACATCAT  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACAAGGAAAGGGCCTCCTGTCCCACCTCTACCTAAAGTCACCCCGACAAAGGAACTGCAGCAGGAGAACATCAT  962

Query  963  CAGTTTCTTTGAGGACAACTTTGTTCCAGAAATCAGTGTGACAACACCTTCCCAGAATGAAGTCCCTGAGGTGA  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CAGTTTCTTTGAGGACAACTTTGTTCCAGAAATCAGTGTGACAACACCTTCCCAGAATGAAGTCCCTGAGGTGA  1036

Query 1037  AGAAAGAGGAGACTTTGCTGGATCTGGACTTTGATCCTTTCAAGCCCGAGGTGACACCTGCAGGTTCTGCTGGA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  AGAAAGAGGAGACTTTGCTGGATCTGGACTTTGATCCTTTCAAGCCCGAGGTGACACCTGCAGGTTCTGCTGGA  1110

Query 1111  GTGACCCACTCACCCATGTCTCAGACATTGCCCTGGGACCTATGGACGAC-----------AA-----------  1162
            ||||||||||||||||||||||||||||||||||||||||||||||||||           ||           
Sbjct 1111  GTGACCCACTCACCCATGTCTCAGACATTGCCCTGGGACCTATGGACGACTGACTCTTCAGAAAGTCTTTCCTT  1184

Query 1163  --------------------------------------------------------------------------  1162
                                                                                      
Sbjct 1185  GTGTAACCTGATCATGGAGGAAACTCCAGACAGTGGGTTGGCCGAAGAAATTCAAAGATCTCAAAATGATATAG  1258

Query 1163  ---------------GCACTGA-------------------------------------------TTTGG----  1174
                           ||.||||                                           |||||    
Sbjct 1259  GTGCATTTACTTGGGGCCCTGACGCTAGTACAGACAGGGTCAGCCAAGAAGTTACCTCAGGTGGGTTTGGAGAA  1332

Query 1175  ----------------------------------TA-----------CAGCCGGCT----TCTGGTG-------  1192
                                              ||           |||||.|||    ||||.||       
Sbjct 1333  GACTCTGCATGTCCCTCCGAAACAGAGCAAGACATAAGATTATCCACCAGCCTGCTTTCGTCTGCTGACTGGCC  1406

Query 1193  --------------------------------------------------------------------------  1192
                                                                                      
Sbjct 1407  CACTGTAGCTGAAGAGAGTGAGCATGCCCCGGGGCCAGCCTTTCCAGGTGGAAATGAACAACTGCCCCCAAAGC  1480

Query 1193  -----------------GTT--CATT---------------------------TAATG--------GATTCACA  1212
                             |||  ||||                           | |||        ||.|||.|
Sbjct 1481  CTGCGCCGGAGGCTGGAGTTGCCATTGCTGCTTGTGTGGAGATGGAGCAGCTGT-ATGACCCACTTGACTCAGA  1553

Query 1213  CA-GCC--CCA-GGATAC----------TTCA-------TTAT-------------------------------  1234
            || |||  ||| |||.||          ||||       |.||                               
Sbjct 1554  CATGCCAGCCATGGACACAGCTGGCCTGTTCAAAGAAAGTCATGAAGATATGAAGAAGTCAGATGAAGAGGAAG  1627

Query 1235  ----------------------------------------------TCACAATGCAGAC---------------  1247
                                                          |||.||.|.||||               
Sbjct 1628  AGAAACAGAAGATGGAAGATTCTCTGTGGGCAGGTGTGGAGGCGTGTCAAAAGGTAGACACTGGAGCTATTGAT  1701

Query 1248  ----AGAC---------------------------------------------------CAGAGT---------  1257
                ||||                                                   ||||||         
Sbjct 1702  ATCAAGACACTAGAAGGTACAGAGGAATTTGAAGAGAAAGCATGTGAAAGGACAGGAAACAGAGTGGTAGAACT  1775

Query 1258  --------------------------------------------------------------ATGATCT----G  1265
                                                                          |.|||||    |
Sbjct 1776  TCTTAATACCATAGGAAAGGAAGACCATAAGACCTTAAAAATTAATGAAGTGGAAACTAGAAAAGATCTAAGAG  1849

Query 1266  C---------------------------------------------AACT------------------------  1270
            |                                             ||||                        
Sbjct 1850  CAGGGTATAAGGAAAGTACAAACGCCAATGAAAATTATTTTGAGAAAACTGACCTATTAGAAAAGGACATGGAA  1923

Query 1271  ----------TGGC------------------------------------------------------------  1274
                      ||||                                                            
Sbjct 1924  GGAGGAGATATGGCAAAAGAACTTAGTGACAGAGACCAAGGTCTACATGATGGAATTCAAAAGGTAATCAATAA  1997

Query 1275  -----------------------------------------------------TGAATC---------------  1280
                                                                 ||||||               
Sbjct 1998  TTGTGGAATGATAGAAGGCTTTGGAGCCAAACCTGCCAATCACCCAGATATCTTGAATCCATCTCTCCAGACCT  2071

Query 1281  ----------------TGAACAGG--------------------------------------------------  1288
                            ||||.|.|                                                  
Sbjct 2072  ACTCTGTATCTAATATTGAAGATGGCAGCCCTGAGGGATGGGATTTGACTAGAAAAGACATAAAGAAAAATGCA  2145

Query 1289  -------CTCC--------------------ACCC-------------ACAGA---------------------  1301
                   ||||                    ||||             |||||                     
Sbjct 2146  ATAGACACTCCCAACCATGATATGATATTTTACCCAGCACAAGACAGTACAGATGCTGAAGAAATTCAGTGTGA  2219

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 2220  GACTGTGTTAAATGCTCTTGTAGGTGACAGGGATAAAAATCAGGCTGTTTTATCAATAAAACTTGAAGTAGAAG  2293

Query 1302  --------------------------------------------------------------------------  1301
                                                                                      
Sbjct 2294  CTCAGTCTAGGACTGACCTTAATTATTCTCTGGGAAGAGATGCAAACAGAAGAGATTTATGTTCATGTAAGGCA  2367

Query 1302  -----------------------------------------------------------------GCCAAAA--  1308
                                                                             |||||.|  
Sbjct 2368  GAAAGTTCACTAATAGAAGGGTCTGAAAGAACAGTAACTGAGAACCGTAGTCATACTGTTAACTTGCCAAGAAT  2441

Query 1309  -GCAGAG------------------GAGCC--------TCTGGCTGC---------------------------  1328
             ||||||                  ||.||        ||||||.||                           
Sbjct 2442  TGCAGAGATAGACTCTTGGGGAACAGATCCAGGTCAAATCTGGCAGCCAAGCTTGGATTCAGCAATGAATAATT  2515

Query 1329  --------------------------------------------------------TGTC--------------  1332
                                                                    ||||              
Sbjct 2516  TGGATATAACAGGATTCTCTGGTATACCAGATGGCCAAGCAAGTGGATTTGCCAGTTGTCTGGATTCTATTAAC  2589

Query 1333  ------------------------------------------ACAC----------------------------  1336
                                                      ||||                            
Sbjct 2590  CACTGGCCTATCAGAGATACAGAAGGCTTAGATAATAGCTGGACACATTCAGATGTAGTTGAGCACAAGGAAGA  2663

Query 1337  -CTGCCGTTGGTCT------------------------------------------------------------  1349
             |||..|.|||.||                                                            
Sbjct 2664  ACTGAAGGTGGACTTACTAGCAGGTGATTGTAGGGAACAAGCCATTGCTAGCTGCTGGGAACAAAGCCAGGAGA  2737

Query 1350  ---------------------GGACCT--TGGAATG-----------------------------GAC------  1365
                                 ||||||  |||||||                             |||      
Sbjct 2738  TAGCAAGACCATTGATTTTGGGGACCTCCTGGAATGCTAGCACTGAGAGTTCTGCTAGTTCCCGAGACCAGGAC  2811

Query 1366  -------ACTCGG-----GCTGAGG-----------AGCCAG-----TGGA-----------------GGAGGC  1394
                   ||||.|     .||||.|           |.||||     ||||                 .|||||
Sbjct 2812  ATCAACAACTCAGATTTATCTGAAGATGAAATTGCTAACCAGAGATATGGATTGTTGTACCAAGAAATAGAGGC  2885

Query 1395  AG------------------------------------------------------------------------  1396
            .|                                                                        
Sbjct 2886  TGACAAAGACGAGGCTTCTGGTGGTTCATTTAATGGATTCACACAGCCCCAGGATACTTCATTATTCACAATGC  2959

Query 1397  ---------------------------TGATCATACCTGGAGCTGATGCTGATGCAGCTGTTGGAACCTTGGTG  1443
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2960  AGACAGACCAGAGTATGATCTGCAACTTGATCATACCTGGAGCTGATGCTGATGCAGCTGTTGGAACCTTGGTG  3033

Query 1444  TCAGCAGCTGAGGGGGCCCCAGGAGAGGAAGCAGAGGCGGAGACGGCCACTGTCCCTGCCGGGGAAGGAGTAAG  1517
            |||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 3034  TCAGCAGCTGAGGGGGCCCCAGGAGAGGAAGCAGAGGCGGAGAAGGCCACTGTCCCTGCCGGGGAAGGAGTAAG  3107

Query 1518  TTTAGAGGAGGCCAAAATTGGAACTGAAACCACTGAGGGTGCAGAGAGTGCCCAACCTGAAGCAGAGGAGCTCG  1591
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3108  TTTAGAGGAGGCCAAAATTGGAACTGAAACCACTGAGGGTGCAGAGAGTGCCCAACCTGAAGCAGAGGAGCTCG  3181

Query 1592  AAGCAACAGTGCCTCAGGAGAAGGTCATTCCTTCGGTGGTCATAGAGCCTGCCTCCAACCATGAAGAGGAAGGA  1665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3182  AAGCAACAGTGCCTCAGGAGAAGGTCATTCCTTCGGTGGTCATAGAGCCTGCCTCCAACCATGAAGAGGAAGGA  3255

Query 1666  GAAAACGAAATAACTATAGGTGCAGAGCCCAAGGAGACCACCGAGGACGCGGCTCCTCCGGGCCCCACCAGCGA  1739
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3256  GAAAACGAAATAACTATAGGTGCAGAGCCCAAGGAGACCACCGAGGACGCGGCTCCTCCGGGCCCCACCAGCGA  3329

Query 1740  GACACCGGAGCTGGCTACGGAGCAGAAGCCTATCCAGGACCCTCAGCCCACGCCTTCTGCACCAGCCATGGGGG  1813
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330  GACACCGGAGCTGGCTACGGAGCAGAAGCCTATCCAGGACCCTCAGCCCACGCCTTCTGCACCAGCCATGGGGG  3403

Query 1814  CTGCTGACCAGCTAGCATCTGCAAGGGAGGCCTCTCAGGAATTGCCTCCTGGCTTTCTCTACAAGGTGGAAACA  1887
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3404  CTGCTGACCAGCTAGCATCTGCAAGGGAGGCCTCTCAGGAATTGCCTCCTGGCTTTCTCTACAAGGTGGAAACA  3477

Query 1888  CTGCATGATTTTGAGGCAGCAAATTCTGATGAACTTACCTTACAAAGGGGTGATGTGGTGCTGGTGGTCCCCTC  1961
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3478  CTGCATGATTTTGAGGCAGCAAATTCTGATGAACTTACCTTACAAAGGGGTGATGTGGTGCTGGTGGTCCCCTC  3551

Query 1962  AGATTCAGAAGCTGATCAGGATGCAGGCTGGCTGGTGGGAGTGAAGGAATCAGACTGGCTTCAGTACAGAGACC  2035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3552  AGATTCAGAAGCTGATCAGGATGCAGGCTGGCTGGTGGGAGTGAAGGAATCAGACTGGCTTCAGTACAGAGACC  3625

Query 2036  TTGCCACCTACAAAGGCCTCTTTCCAGAGAACTTCACCCGACGCTTAGAT  2085
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3626  TTGCCACCTACAAAGGCCTCTTTCCAGAGAACTTCACCCGACGCTTAGAT  3675