Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_05933
- Subject:
- XR_002957688.1
- Aligned Length:
- 5215
- Identities:
- 2097
- Gaps:
- 3115
Alignment
Query 1 -----------------------ATGGCGGGCATCGCGGCCAAGCTGGCGAAGGACCGGGAGGCGGCCGAGGGG 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGTACGGCCGCCGGGACCGCAGCATGGCGGGCATCGCGGCCAAGCTGGCGAAGGACCGGGAGGCGGCCGAGGGG 74
Query 52 CTGGGCTCCCACGAGAGGGCCATCAAGTACCTCAACCAGGACTACGAGGCGCTGCGGAACGAGTGCCTGGAGGC 125
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CTGGGCTCCCACGACAGGGCCATCAAGTACCTCAACCAGGACTACGAGGCGCTGCGGAACGAGTGCCTGGAGGC 148
Query 126 CGGGACGCTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCTGGGCTTCAAGGAGTTGGGGCCCTACT 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGGGACGCTCTTCCAGGACCCGTCCTTCCCGGCCATCCCCTCGGCCCTGGGCTTCAAGGAGTTGGGGCCCTACT 222
Query 200 CCAGCAAAACCCGGGGCATCGAGTGGAAGCGCCCCACGGAGATCTGCGCTGACCCCCAGTTTATCATTGGAGGA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCAGCAAAACCCGGGGCATCGAGTGGAAGCGCCCCACGGAGATCTGCGCTGACCCCCAGTTTATCATTGGAGGA 296
Query 274 GCCACCCGCACAGACATCTGCCAAGGAGCCCTAGGTGACTGCTGGCTGCTGGCAGCCATTGCCTCCCTCACCTT 347
||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GCCACCCGCACAGACATCTGCCAAGGAGCCCTGGGTGACTGCTGGCTGCTGGCAGCCATTGCCTCCCTCACCTT 370
Query 348 GAATGAAGAAATCCTGGCTCGAGTCGTCCCCCTAAACCAGAGCTTCCAGGAAAACTATGCAGGGATCTTTCACT 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAATGAAGAAATCCTGGCTCGAGTCGTCCCCCTAAACCAGAGCTTCCAGGAAAACTATGCAGGGATCTTTCACT 444
Query 422 TCCAGTTCTGGCAATACGGCGAGTGGGTGGAGGTGGTGGTGGATGACAGGCTGCCCACCAAGGACGGGGAGCTG 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCCAGTTCTGGCAATACGGCGAGTGGGTGGAGGTGGTGGTGGATGACAGGCTGCCCACCAAGGACGGGGAGCTG 518
Query 496 CTCTTTGTGCATTCAGCCGAAGGGAGCGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATACGCCAAGATCAACGG 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTCTTTGTGCATTCAGCCGAAGGGAGCGAGTTCTGGAGCGCCCTGCTGGAGAAGGCATACGCCAAGATCAACGG 592
Query 570 ATGCTATGAAGCACTATCAGGGGGTGCCACCACTGAGGGCTTCGAAGACTTCACCGGAGGCATTGCTGAGTGGT 643
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGCTATGAAGCGCTATCAGGGGGTGCCACCACTGAGGGCTTCGAAGACTTCACCGGAGGCATTGCTGAGTGGT 666
Query 644 ATGAGTTGAAGAAGCCCCCTCCCAACCTGTTCAAGATCATCCAGAAAGCTCTGCAAAAAGGCTCTCTCCTTGGC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ATGAGTTGAAGAAGCCCCCTCCCAACCTGTTCAAGATCATCCAGAAAGCTCTGCAAAAAGGCTCTCTCCTTGGC 740
Query 718 TGCTCCATCGACATCACCAGCGCCGCGGACTCGGAGGCCATCACGTTTCAGAAGCTGGTGAAGGGGCACGCGTA 791
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TGCTCCATCGACATCACCAGCGCCGCGGACTCGGAGGCCATCACGTTTCAGAAGCTGGTGAAGGGGCACGCGTA 814
Query 792 CTCGGTCACCGGAGCCGAGGAGGTTGAAAGTAACGGAAGCCTACAGAAACTGATCCGCATCCGAAATCCCTGGG 865
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCGGTCACCGGAGCCGAGGAGGTTGAAAGTAACGGAAGCCTACAGAAACTGATCCGCATCCGAAATCCCTGGG 888
Query 866 GAGAAGTGGAGTGGACAGGGCGGTGGAATGACAACTGCCCAAGCTGGAACACTATAGACCCAGAGGAGAGGGAA 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAAGTGGAGTGGACAGGGCGGTGGAATGACAACTGCCCAAGCTGGAACACTATAGACCCAGAGGAGAGGGAA 962
Query 940 AGGCTGACCAGACGGCATGAAGATGGAGAATTCTGGATGTCTTTCAGTGACTTCCTGAGGCACTATTCCCGCCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AGGCTGACCAGACGGCATGAAGATGGAGAATTCTGGATGTCTTTCAGTGACTTCCTGAGGCACTATTCCCGCCT 1036
Query 1014 GGAGATCTGTAACCTGACCCCAGACACTCTCACCAGCGATACCTACAAGAAGTGGAAACTCACCAAAATGGATG 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGAGATCTGTAACCTGACCCCAGACACTCTCACCAGCGATACCTACAAGAAGTGGAAACTCACCAAAATGGATG 1110
Query 1088 GGAACTGGAGGCGGGGCTCCACCGCGGGAGGTTGCAGGAACTACCCGAACACATTCTGGATGAACCCTCAGTAC 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGAACTGGAGGCGGGGCTCCACCGCGGGAGGTTGCAGGAACTACCCGAACACATTCTGGATGAACCCTCAGTAC 1184
Query 1162 CTGATCAAGCTGGAGGAGGAGGATGAGGACGAGGAGGATGGGGAGAGCGGCTGCACCTTCCTGGTGGGGCTCAT 1235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CTGATCAAGCTGGAGGAGGAGGATGAGGACGAGGAGGATGGGGAGAGCGGCTGCACCTTCCTGGTGGGGCTCAT 1258
Query 1236 TCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTTGGCATCTATGAGGTTC 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCAGAAGCACCGACGGCGGCAGAGGAAGATGGGCGAGGACATGCACACCATCGGCTTTGGCATCTATGAGGTTC 1332
Query 1310 CAGAGG-------------------------------------------------------------------- 1315
||||||
Sbjct 1333 CAGAGGAGGAGAAGACTGAGTCAGGGAAAAGGTGAACCCTGCAGACTGTACTAGAAGACAACGCGGGAGCACAG 1406
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1407 AGGAGACCAGGACCCAATTCCCAGGCTGTGTGACCTTGGACACGTTACAGCTCCTCTCTGCATTTCAGGGTTTT 1480
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1481 GTTTTTTTTTTTTTTGATTTTTGGTTTGTTTGTTTGTTTTTTGTCTCGCTCTTTCACCCAGGATGAAGTGCAGT 1554
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1555 GGCATGATCTCGACTCACTGCAACCTCTACCTCCTGGGTTCAAGTGATTCTCCTGCTTCAGCCTCCCCAGTAGC 1628
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1629 TGGGACTACAGGCACGCACCAGGATGCCAGGCCAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGGTG 1702
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1703 GCCAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCCCCTTCAGCCTCCCAAAGTGCTAGGATTACAGGT 1776
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1777 GTAGCCACCGTGCCTGGCTGCATTTCAGTTTATTTTTCAGTAAAACTGGTCAACCATCCACCTCACTGCACTAC 1850
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1851 CGTGGAATGACTTAAATTTTGCGAGAGCATTTGGGCCCACAGTCACCGCTTGCTGAAGCAGATGGGATGCCTGG 1924
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1925 TCCAAGGTCACGATTATTAAAGTAGACACACGGGGCACTTTGACCCACCTGTAGTACATTTCTTTCACAGCAAG 1998
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 1999 GCAGTGCAACCGGTAGCACATCGGGCTCTTTTAGATGCTGCTCCAGCCTTGGTCCGGTGGATCATGCTTGGTTT 2072
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2073 AGAAGCTGGGTTGTCTTTCTCCTGCCCCCAGTCCTGTCTTTGCTTTTATAGTGCATCATACACCACGTAGAACC 2146
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2147 GAGCCAGGTTCCTGCCATGTGGACGCTGTTCCTGCCTGAGAGTCTCTTAGAGGAAGGCTGGGAACACTGTGGAA 2220
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2221 AGACTGGGCATCTCTGCAGGCGGAGCTGAATGGATGTGAAACCCCTGTGGGCATGTGCTTCCGAGTTCCTCAGC 2294
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2295 AGGCATTTGTGTTTTTTGGTAGAAAGTTTGCTTTTTGTTTTTTTTTTTTTTAAGACAAGGTCTCATTCTGTCAC 2368
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2369 CCAGGCTAGAGTACAGTGGTGTGATCATAGCTCACTGCCGTCCTTGAACTCTCAGACTCACGTGAGCCTCCTAC 2442
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2443 CTCAGCCTCCTGAGTAGCTGAGACTACAGGCGCTTGCCGCCACCCCTGGCTAATATTTTTATTTTTTGCAGAGA 2516
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2517 CAGGGGTCTCACTACATTGCCCAGGCTGGTCTCAAACTCCTGGCCTCGAGCAATCCTCTCACAGCCTCCCAAAG 2590
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2591 TGCTGGTATTACAGGCGTGAGCCACCACACCTAACAAAAGTTTGCTTTTTATCTAAAATGACCCAGGCATTGTC 2664
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2665 ACTGTACTGCTATTTTTTTAAAAAAATTTTGTTGTTTTGTTGTTGTTGTCGTCGTTATATAGATGAGGGCTTCC 2738
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2739 TGTGTTGCCCAGGCTGGTTTCTGACGCCTGGCCTCGCCTCCTTATACACCAGGACAGCAGGACTGAGCCACCAC 2812
Query 1316 -------------------------------------------------------------------------- 1315
Sbjct 2813 ACTACCCAACTGCTTTTATCTCAGTGAATGAAAATGATACTTGCCTGGAGGCTTCCCCTCATCTACCCCCATGT 2886
Query 1316 -----------------AGTTAAGTGGGCAGACCAACATCCACCTCAGCAAAAACTTCTTCCTGACGAATCGCG 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 TTCTCTATTTATTCCTCAGTTAAGTGGGCAGACCAACATCCACCTCAGCAAAAACTTCTTCCTGACGAATCGCG 2960
Query 1373 CCAGGGAGCGCTCAGACACCTTCATCAACCTCCGGGAGGTGCTCAACCGCTTCAAGCTGCCGCCAGGAGAGTAC 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CCAGGGAGCGCTCAGACACCTTCATCAACCTCCGGGAGGTGCTCAACCGCTTCAAGCTGCCGCCAGGAGAGTAC 3034
Query 1447 ATTCTCGTGCCTTCCACCTTCGAACCCAACAAGGATGGGGATTTCTGCATCCGGGTCTTTTCTGAAAAGAAAGC 1520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 ATTCTCGTGCCTTCCACCTTCGAACCCAACAAGGATGGGGATTTCTGCATCCGGGTCTTTTCTGAAAAGAAAGC 3108
Query 1521 TGACTACCAAGCTGTCGATGATGAAATCGAGGCCAATCTTGAAGAGTTCGACATCAGCGAGGATGACATTGATG 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 TGACTACCAAGCTGTCGATGATGAAATCGAGGCCAATCTTGAAGAGTTCGACATCAGCGAGGATGACATTGATG 3182
Query 1595 ATGGATTCAGGAGACTGTTTGCCCAGTTGGCAGGAGAGGATGCGGAGATCTCTGCCTTTGAGCTGCAGACCATC 1668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 ATGGATTCAGGAGACTGTTTGCCCAGTTGGCAGGAGAGGATGCGGAGATCTCTGCCTTTGAGCTGCAGACCATC 3256
Query 1669 CTGAGAAGGGTTCTAGCAAAGCGCCAAGATATCAAGTCAGATGGCTTCAGCATCGAGACATGCAAAATTATGGT 1742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 CTGAGAAGGGTTCTAGCAAAGCGCCAAGATATCAAGTCAGATGGCTTCAGCATCGAGACATGCAAAATTATGGT 3330
Query 1743 TGACATGCTAGATTCGGACGGGAGTGGCAAGCTGGGGCTGAAGGAGTTCTACATTCTCTGGACGAAGATTCAAA 1816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 TGACATGCTAGATTCGGACGGGAGTGGCAAGCTGGGGCTGAAGGAGTTCTACATTCTCTGGACGAAGATTCAAA 3404
Query 1817 AATACCAA------------------------------------------------------------------ 1824
||||||||
Sbjct 3405 AATACCAAGTAAGATCCCAGAGATGCGGGTGGATCTGTGTTGGGAAACATTCTGTTCATATGCTTTAAGATGCA 3478
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3479 GCAACTCCTGCACAGAGTGGAGAAACATTTCCAAGGGGATTGGGATTTTACCCATAATGAAGCTCAGAGTGAGT 3552
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3553 AAAGATGGGGCTGAGGAAATGCAAACAAAAAACCAACCAGGACTTCGCAGGTGAAATGGCCTATTCCCTTCCTC 3626
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3627 CTGATTATTGGGATCATCTAAAGGCCACCATCAAGGGTTTCCTGAAAAGGGTTTTTGACAGCTAAAGTACAAAA 3700
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3701 ATTATATAAGACAAGAACATGGACCTATGGGCGTTGGCTGGCTGATTTGATGGGCATATTTACAAACCAGCTCA 3774
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3775 CAGACAGAAGCAAAATACTATTAGTTATTTAAGGCAGAAACATAAGTGATTCTTCCACGGCCAAACTAGAGGCA 3848
Query 1825 -------------------------------------------------------------------------- 1824
Sbjct 3849 CAGAGCTGGAAAAACTTCATCCCCACTCAGCACATACTAGGGAGGTAACTTGCCAGCTTTGCTTTGGGTCATAG 3922
Query 1825 ---------------------------AAAATTTACCGAGAAATCGACGTTGACAGGTCTGGTACCATGAATTC 1871
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 TTCTTACAGCTAACTTATGTGTTCCAGAAAATTTACCGAGAAATCGACGTTGACAGGTCTGGTACCATGAATTC 3996
Query 1872 CTATGAAATGCGGAAGGCATTAGAAGAAGCAGGTTTCAAGATGCCCTGTCAACTCCACCAAGTCATCGTTGCTC 1945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 CTATGAAATGCGGAAGGCATTAGAAGAAGCAGGTTTCAAGATGCCCTGTCAACTCCACCAAGTCATCGTTGCTC 4070
Query 1946 GGTTTGCAGATGACCAGCTCATCATCGATTTTGATAATTTTGTTCGGTGTTTGGTTCGGCTGGAAACGCTATTC 2019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 GGTTTGCAGATGACCAGCTCATCATCGATTTTGATAATTTTGTTCGGTGTTTGGTTCGGCTGGAAACGCTATTC 4144
Query 2020 AAGATATTTAAGCAGCTGGATCCCGAGAATACTGGAACAATAGAGCTCGACCTTATCTCTTGGCTCTGTTTCTC 2093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4145 AAGATATTTAAGCAGCTGGATCCCGAGAATACTGGAACAATAGAGCTCGACCTTATCTCTTGGCTCTGTTTCTC 4218
Query 2094 AGTACTT------------------------------------------------------------------- 2100
|||||||
Sbjct 4219 AGTACTTTGAAGTTATAACTAATCTGCCTGAAGACTTCTCATGATGGAAAATCAGCCAAGGACTAAGCTTCCAT 4292
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4293 AGAAATACACTTTGTATCTGGACCTCAAAATTATGGGAACATTTACTTAAACGGATGATCATAGCTGAAAATAA 4366
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4367 TGATACTGTCAATTTGAGATAGCAGAAGTTTCACACATCAAAGTAAAAGATTTGCATATCATTATACTAAATGC 4440
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4441 AAATGAGTCGCTTAACCCTTGACAAGGTCAAAGAAAGCTTTAAATCTGTAAATAGTATACACTTTTTACTTTTA 4514
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4515 CACACTTTCCTGTTCATAGCAATATTAAATCAGGAAAAAAAAATGCAGGGAGGTATTTAACAGCTGAGCAAAAA 4588
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4589 CATTGAGTCGCTCTCAAAGGACACGAGGCCCTTGGCAGGGAATATTTAAAGCAACTTCAAGTTTAAAATGCAGC 4662
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4663 TGTTGATTCTACCAAACAACAGTCCAAGATTACCATTTCCCATGAGCCAACTGGGAAACATGGTATATCATGAA 4736
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4737 GTAATCTTGTCAAGGCATCTGGAGAGTCCAGGAGAGAAGACTCACCTCTGTCGCTTGGGTTAAACAAGAGACAG 4810
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4811 GTTTTGTAGAATATTGATTGGTAATAGTAAATCGTTCTCCTTACAATCAAGTTCTTGACCCTATTCGGCCTTAT 4884
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4885 ACATCTGGTCTTACAAAGACCAAAGGGATCCTGCGCTTGATCAACTGAACCAGTATGCCAAAACCAGGCATCCA 4958
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 4959 ATTTGTAAACCAATTATGATAAAGGACAAAATAAGCTGTTTGCCACCTCAAAACTTTATGAACTTCACCACCAC 5032
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 5033 TAGTGTCTGTCCATGGAGTTAGAGGGGACATCACTTAGAAGTTCTTATAGAAAGGACACAAGTTTGTTTCCTGG 5106
Query 2101 -------------------------------------------------------------------------- 2100
Sbjct 5107 CTTTACCTTGGGAAAATGCTAGCAACATTATAGAAATTTTGCCTTGTTGCCTTATCTTCTTCCAAATGTACTGT 5180
Query 2101 ----------------------------------- 2100
Sbjct 5181 TAAATAAAAATAAAGGGTTACCCCATGCAATCACA 5215
