Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_06003
• Subject: NM_027454.4
• Aligned Length: 1412
• Identities: 1084
• Gaps: 103

Alignment

Query    1  -----ATGCTCC---CAGATTTTATGCTGGTTCTCATCGTCCTTGGCA-TCCC-----TTCCT-----------  49
                 |.|||.|   |.|.|.||.|  |||.|||||      .||.|| ||.|     |||||           
Sbjct    1  ATGACAGGCTTCCTACGGGTCTTCT--TGGCTCTCA------GTGCCACTCTCTCAGGTTCCTGGGTGACTCTC  66

Query   50  -CAGCCACCACAGGTTTCAACTCAATCGCCGAAAATGAAGATGCCCTCCTCAGACATTTGTTCCAAGGTTATCA  122
             |||||||..|.||..|||.||||.|.||.|||.|||||||.||.|||||||||||||||||||||||||||||
Sbjct   67  ACAGCCACTGCGGGACTCAGCTCAGTGGCTGAACATGAAGACGCACTCCTCAGACATTTGTTCCAAGGTTATCA  140

Query  123  GAAATGGGTCCGCCCTGTATTACATTCTAATGACACCATAAAAGTATATTTTGGATTGAAAATATCCCAGCTTG  196
            ||||||.|||||||||||.||..||||.|.|||||.|||||||||.|||||||||||.||.|||||.|||||||
Sbjct  141  GAAATGTGTCCGCCCTGTGTTGAATTCCAGTGACATCATAAAAGTGTATTTTGGATTAAAGATATCTCAGCTTG  214

Query  197  TAGATGTGGATGAAAAGAATCAGCTGATGACAACCAATGTGTGGCTCAAACAGGAATGGACAGACCACAAGTTA  270
            |||||||                                             |||||||||||||||.||.|||
Sbjct  215  TAGATGT---------------------------------------------GGAATGGACAGACCAAAAATTA  243

Query  271  CGCTGGAATCCTGATGATTATGGTGGGATCCATTCCATTAAAGTTCCATCAGAATCTCTGTGGCTTCCTGACAT  344
            ||.||||||||.||.||.||||||||.||..||||.||.||.||||||||.||.||.||.|||||.||||||||
Sbjct  244  CGATGGAATCCCGAAGACTATGGTGGAATTAATTCGATAAAGGTTCCATCGGAGTCGCTCTGGCTGCCTGACAT  317

Query  345  AGTTCTCTTTGAAAATGCTGACGGCCGCTTCGAAGGCTCCCTGATGACCAAGGTCATCGTGAAATCAAACGGAA  418
            ||||||||||||||||||||||||.||.||.||.|||||.||.||||||||||.|||.||||||||.|.|||||
Sbjct  318  AGTTCTCTTTGAAAATGCTGACGGACGTTTTGAGGGCTCTCTCATGACCAAGGCCATTGTGAAATCCAGCGGAA  391

Query  419  CTGT-TGTCTGGACCCCTCCCGCCAGCTACAAAAGCTCCTGCACCATGGACGTCACGTTTTTCCCGTTCGACCG  491
            |.|| .|| |||||.||||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||...
Sbjct  392  CCGTCAGT-TGGACTCCTCCCGCCAGCTACAAAAGTTCCTGTACCATGGATGTCACATTTTTCCCGTTCGATAA  464

Query  492  ACAGAACTGCTCCATGAAGTTTGGATCCTGGACTTATGATGGCACCATGGTTGACCTCATTTTGATCAATGAAA  565
            .|||||||||||.||||||||.||||||||||||||.|||||.||||||||.|||||||||.||||||||||||
Sbjct  465  GCAGAACTGCTCAATGAAGTTCGGATCCTGGACTTACGATGGTACCATGGTCGACCTCATTCTGATCAATGAAA  538

Query  566  ATGTCGACAGAAAAGACTTCTTCGATAACGGAGAATGGGAAATACTGAATGCAAAGGGGATGAAGGGGAACAGA  639
            |.||.|||.|.||||||||.||.|||||||||||.|||||.|||||.||||||||||||||||||||.||||||
Sbjct  539  ACGTTGACCGGAAAGACTTTTTTGATAACGGAGAGTGGGAGATACTAAATGCAAAGGGGATGAAGGGCAACAGA  612

Query  640  AGGGACGGCGTGTACTCCTATCCCTTTATCACGTATTCCTTCGTCCTGAGACGCCTGCCTTTATTCTATACCCT  713
            ||.||.|||.|.|||||||||||.|||.|.||.||.||.||.||.||||||||||||||..|.||.||.|||||
Sbjct  613  AGAGAAGGCTTTTACTCCTATCCGTTTGTTACCTACTCTTTTGTTCTGAGACGCCTGCCCCTGTTTTACACCCT  686

Query  714  CTTTCTCATCATCCCCTGCCTGGGGCTGTCTTTCCTAACAGTTCTTGTGTTCTATTTACCTTCGGATGAAGGAG  787
            ||||.|.||.|||||||||||||||||||||||.||.||.||.||.||||||||..||||.||.||.|||||.|
Sbjct  687  CTTTTTGATAATCCCCTGCCTGGGGCTGTCTTTTCTCACGGTCCTGGTGTTCTACCTACCCTCCGACGAAGGGG  760

Query  788  AAAAACTTTCATTATCCACATCGGTCTTGGTTTCTCTGACAGTTTTCCTTTTAGTGATTGAAGAAATCATCCCA  861
            |||||||.||.||||||||.|||||.|||||||||.|||||||.||.||||||||.||.||||||||.|||||.
Sbjct  761  AAAAACTCTCCTTATCCACCTCGGTTTTGGTTTCTTTGACAGTGTTTCTTTTAGTAATCGAAGAAATAATCCCG  834

Query  862  TCGTCTTCCAAAGTCATTCCTCTCATTGGAGAGTACCTGCTGTTCATCATGATTTTTGTGACCCTGTCCATCAT  935
            ||.|||||.||||||||.|||||||||||.||||||||.||.|||||.|||||.|||||.||.|||||.||.||
Sbjct  835  TCTTCTTCAAAAGTCATCCCTCTCATTGGGGAGTACCTCCTCTTCATTATGATATTTGTCACGCTGTCTATTAT  908

Query  936  TGTTACCGTGTTTGTCATTAACGTTCACCACAGATCTTCTTCCACGTACCACCCCATGGCCCCCTGGGTTAAGA  1009
            |||.||.||.|||||.|||||.||.||||||||||||||.||.||||||||.|||||||||||||||||.||||
Sbjct  909  TGTCACGGTTTTTGTAATTAATGTCCACCACAGATCTTCCTCAACGTACCATCCCATGGCCCCCTGGGTGAAGA  982

Query 1010  GGCTCTTTCTGCAGAAACTTCCAAAATTACTTTGCATGAAAGATCATGTGGATCGCTACTCATCCCCAGA--GA  1081
            ||||.||||||.|.|||||.||.|.||..|||||||||||.||.|....|||.||||.|||.|.|||.||  ||
Sbjct  983  GGCTGTTTCTGGAAAAACTCCCGAGATGGCTTTGCATGAAGGACCCCAGGGACCGCTTCTCTTTCCCCGATGGA  1056

Query 1082  AAGAGGAGAGT----CAACCAGTAGTGAAAGGCAAAGTCCTCGAAAAAAAGAAACAGAAACAGCT-----TAGT  1146
            |  .|||||||    .||||    ||||..||.|||.|.|..|..||||||||.||||     ||     .|||
Sbjct 1057  A--CGGAGAGTAAGGGAACC----GTGAGGGGGAAATTTCCAGGGAAAAAGAAGCAGA-----CTCCTACCAGT  1119

Query 1147  GATGGAGAAAAAGTTCTAGTTGCTTTTTTGGAAAAAGCTGCTGATTCCATTAGATACATTTCCAGACATGTGAA  1220
            ||||||||||.||||||.||.|||||..||||.||.||..||||.|||||.||||||||.||.||.||||||||
Sbjct 1120  GATGGAGAAAGAGTTCTGGTCGCTTTCCTGGAGAAGGCCTCTGAGTCCATCAGATACATCTCGAGGCATGTGAA  1193

Query 1221  GAAAGAACATTTTATCAGCCAGGTAGTACAAGACTGGAAATTTGTAGCTCAAGTTCTTGACCGAATCTTCCTGT  1294
            |||.|||||.||.|||||.|||||.||.||||||||||||||.||.|||||.|||||||||||.||||||||.|
Sbjct 1194  GAAGGAACACTTCATCAGTCAGGTTGTTCAAGACTGGAAATTCGTGGCTCAGGTTCTTGACCGCATCTTCCTCT  1267

Query 1295  GGCTCTTTCTGATAGTGTCAGTAACAGGCTCGGTTCTGATTTTTACCCCTGCTTTGAAGATGTGGCTACATAGT  1368
            ||||||||||||.||..||.||....|||||.||.||||||||||..||.||.||||||||||||.|||||.||
Sbjct 1268  GGCTCTTTCTGACAGCTTCGGTTTTGGGCTCTGTCCTGATTTTTATTCCAGCCTTGAAGATGTGGATACATCGT  1341

Query 1369  TACCAT  1374
            |.||||
Sbjct 1342  TTCCAT  1347