Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06034
- Subject:
- NR_004843.2
- Aligned Length:
- 4637
- Identities:
- 1919
- Gaps:
- 2411
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTTCCTTGGTTCCGGACACAGTCCACGCAGTAACTTGTTTTTGCAGAGACTGATAGGCGGATCGGGCGTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGAGCGCGCCCCACTCAGGGAAAGCTGCCGTCCCTCTTTGCCTTTGAGCGCCGCAGCCCTGAGAATCGCATCTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCTTGGAAACGGTCCCAGGACTGGAGCCACCAAGAAAGCCGAAGGCAGTCGCGAAGAGCCGAGGACGCCCAGAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACTCTGCGGCTTCCGGGAAGCGGAACCGAGCCTACCCGGAAGGAGCCAACCTCACCTGAGGCTCGCTGAGCACC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGCAGGCGTTAAACCTAACGGAGCCCACGTCATGGCGGCAGACGGGACAGGGGTAGTCGGAGGAGGGGCTGTCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGCGGCCTGCCCAAGGACGGTTTGCAGGATGCTAAGTGCCCAGAGCCAATCCCCAATCGGCGGCGCGCTTCC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TCGCTGTCCCGTGACGCGCAGCGCCGAGCCTATCAGTGGTGCCGGGAGTACCTGGGCGGGGCCTGGCGCCGAGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCGGCCGGAGGAGCTGAGCGTTTGTCCCGTGAGCGGAGGCCTCAGCAACCTGCTCTTCCGATGCTCACTACCGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACCACGTACCCAGTGTGGGCGGGGAGCCCCGGGAGGTGCTGCTACGACTCTACGGGGCCATCCTGCAGGGTGTA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GACTCCTTGGTATTAGAAAGCGTGATGTTCGCCATTCTCGCAGAGCGGTCTCTAGGGCCCCAGCTTTACGGAGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTTTCCAGAGGGCCGCTTGGAACAGTACCTCCCAGTAAGAGCCCAGTTTTTGTTGTTTTTACCCCAAGTCTTTA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCCTTCCCAAAGTCTGCCTTCACATCCCAGGTAGGGAAATTTCCCTAAGACCTTGATCTCCTCCCATCCCGTAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCCTTCCCCCTCCCGCCCCAGCCCCCTCACCACCCTGATAGGTTACTGGGTACAGAGCCGGCCGTTGAAAACTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AAGAGCTCCGGGACCCAGTGTTGTCGGGAGCCATTGCAACGAGGATGGCCCGTTTCCATGGTATGGAGATGCCC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTCACTAAGGAGCCCCGATGGTTGTTTGGGACCATGGAGCGGTACCTGAAGCAGATCCAGGACTTGCCTTCCAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CAGCCTTCCCCAGATGAACCTGGTAGAGATGTACAGCCTCAAGGACGAGATGAACAGCCTCAGGAAGTTACTAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACGATACCCCGTCACCAGTGGTCTTCTGCCACAATGACATCCAGGAAGGAAACATCTTGTTGCTTTCAGAGCCA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 GACAGTGATGATAACCTCATGTTGGTTGATTTTGAGTACAGTAGTTATAACTACAGGGGCTTTGACATTGGGAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TCATTTTTGTGAGTGGGTTTATGATTATACTTATGAAGAATGGCCTTTCTACAAAGCAAGACCCACGGACTACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CCACTAGAGAACAGCAGCTCCATTTTATTCGCCATTATCTGGCAGAGGTTCAGAAGGGTGAGATCCTCTCCGAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAGGAACAGAAGAAACGGGAAGAAGAATTGCTGCTAGAGATCAGTCGGTACTCCCTGGCATCTCACTTTTTCTG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GGGTCTGTGGTCCACCCTGCAGGCTTCGATGTCCACTATAGAGTTCGGCTACTTGGAGTATGCCCAATCTCGGT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TCCAGTTCTACTTCCAGCAGAAGGGCCAGCTGACGAGTTCCCCATCATCCTGAGGATCCAACCCCACCTCAAGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 TTCTCCTGGAGCCTCCGGGGCAGGACCTTGGAGGGAGGGGCAGAGAGCAGACGACCCCCAGAGACGGGGCTGTG 1776
Query 1 --------------------------ATGGCGGAAGCTCACCAGGCCGTGGCCTTCCAGTTCACGGTGACCCCA 48
|||||||||||.||||||||.||.||.|||||||||||.|||||||||
Sbjct 1777 CCTCAAAGTGCTGAATAAACCCCAGGATGGCGGAAGCACACCAGGCAGTAGCTTTCCAGTTCACTGTGACCCCA 1850
Query 49 GACGGGGTCGACTTCCGGCTCAGTCGGGAGGCCCTGAAACACGTCTACCTGTCTGGGATCAACTCCTGGAAGAA 122
||||||||||||||||||||.|||||||||||.||||.||||.|||||||||||||.|||||||||||||||||
Sbjct 1851 GACGGGGTCGACTTCCGGCTTAGTCGGGAGGCTCTGAGACACATCTACCTGTCTGGAATCAACTCCTGGAAGAA 1924
Query 123 ACGCCTGATCCGCATCAAGAATGGCATCCTCAGGGGCGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTCGTCA 196
||||||.||.||.|||||||||||||||||.|||||.||||||||||||||||||||||||||||||||.||..
Sbjct 1925 ACGCCTTATTCGAATCAAGAATGGCATCCTTAGGGGTGTGTACCCTGGCAGCCCCACCAGCTGGCTGGTTGTTG 1998
Query 197 TCATGGCAACAGTGGGTTCCTCCTTCTGCAACGTGGACATCTCCTTGGGGCTGGTCAGTTGCATCCAGAGATGC 270
|||||||||||||.||||||..||.||||||.||||||||||||.||||.||||||..||||||||||||||||
Sbjct 1999 TCATGGCAACAGTTGGTTCCAACTACTGCAAGGTGGACATCTCCATGGGACTGGTCGATTGCATCCAGAGATGC 2072
Query 271 CTCCCTCAGGGGTGTGGCCCCTACCAGACCCCGCAGACCCGGGCACTTCTCAGCATGGCCATCTTCTCCACGGG 344
|||||..|..|||.|||||.||....||||||.|||||...|||||||||||||||||.||||||||||||.||
Sbjct 2073 CTCCCGGAAAGGTATGGCCACTTTGGGACCCCACAGACAGAGGCACTTCTCAGCATGGTCATCTTCTCCACCGG 2146
Query 345 CGTCTGGGTGACGGGCATCTTCTTCTTCCGCCAAACCCTGAAGCTGCTTCTCTGCTACCATGGGTGGATGTTTG 418
.|||||||.|||.|||||.|||||||||||.|||||||||||||||||.||||.||||||.|||||||||||.|
Sbjct 2147 AGTCTGGGCGACAGGCATTTTCTTCTTCCGACAAACCCTGAAGCTGCTGCTCTCCTACCACGGGTGGATGTTCG 2220
Query 419 AGATGCATGGCAAGACCAGCAACTTG--ACCAGGATCTGGGCTATGTGTATCCGCCTTCTATCCAGCCGGCACC 490
|||||||..||||||||||| |.|| ||||.||||||||||||.|||.||||.||.||.||||||||||..|
Sbjct 2221 AGATGCACAGCAAGACCAGC--CATGCCACCAAGATCTGGGCTATCTGTGTCCGTCTCCTGTCCAGCCGGCGGC 2292
Query 491 CTATGCTCTACAGCTTCCAGACATCTCTGCCCAAGCTTCCTGTGCCCAGGGTGTCAGCCACAATTCAGCGGTAC 564
|.|||||||||||||||||.||.||.|||||.|||||||||||.|||||.|||.|||||||||||||.||||||
Sbjct 2293 CCATGCTCTACAGCTTCCAAACGTCACTGCCTAAGCTTCCTGTCCCCAGCGTGCCAGCCACAATTCACCGGTAC 2366
Query 565 CTAGAGTCTGTGCGCCCCTTGTTGGATGATGAGGAATATTACCGCATGGAGTTGCTGGCCAAAGAATTCCAGGA 638
.|.||.||||||||.|||||.|||||||||||.|.||||||||||||||||....|||||||.|||||||||||
Sbjct 2367 TTGGATTCTGTGCGGCCCTTATTGGATGATGAAGCATATTACCGCATGGAGACATTGGCCAAGGAATTCCAGGA 2440
Query 639 CAAGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAAGTAACTATGTGAGTGACTGGT 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||
Sbjct 2441 CAAGACTGCCCCCAGGCTGCAGAAATACCTGGTGCTCAAGTCATGGTGGGCAACTAACTATGTGAGTGACTGGT 2514
Query 713 GGGAAGAGTACATCTACCTTCGAGGCAGGAGCCCTCTCATGGTGAACAGCAACTATTATGTCATGGACCTTGTG 786
|||||||.||..|||||||.|||.||||||||||.|||||||||||||||||||||||||.||||||..|||||
Sbjct 2515 GGGAAGAATATGTCTACCTCCGAAGCAGGAGCCCCCTCATGGTGAACAGCAACTATTATGCCATGGATTTTGTG 2588
Query 787 CTCATCAAGAATACAGACGTGCAGGCAGCCCGCCTGGGAAACATCATCCACGCCATGATCATGTATCGCCGTAA 860
||.||.|||||.|||.|.|||||.||||||||.||.||.||...|.|.|||||||||||||||||||||||.||
Sbjct 2589 CTTATTAAGAACACAAATGTGCAAGCAGCCCGTCTAGGCAATGCCGTTCACGCCATGATCATGTATCGCCGCAA 2662
Query 861 ACTGGACCGTGAAGAAATCAAGCCTGTGATGGCACTGGGCATAGTGCCTATGTGCTCCTACCAGATGGAGGGGA 934
|||||||||||||||.||||||||
Sbjct 2663 ACTGGACCGTGAAGAGATCAAGCC-------------------------------------------------- 2686
Query 935 TGTTCAACACCACTCGGATCCCGGGCAAGGACACAGATGTGCTACAGCACCTCTCAGACAGCCGGCACGTGGCT 1008
||..|||||||||||||||||||.|||.|||||||||||
Sbjct 2687 -----------------------------------GACTTGCTACAGCACCTCTCAGAGAGCAGGCACGTGGCT 2725
Query 1009 GTCTACCACAAGGGACGCTTCTTCAAGCTGTGGCTCTATGAGGGCGCCCGTCTGCTCAAGCCTCAGGATCTGGA 1082
|||||||||||.||.||||||||||||.|.|||||||||||||||.|.||.|||||||||||.|..||.|||||
Sbjct 2726 GTCTACCACAAAGGTCGCTTCTTCAAGGTCTGGCTCTATGAGGGCTCGCGCCTGCTCAAGCCCCGAGACCTGGA 2799
Query 1083 GATGCAGTTCCAGAGGATCCTGGACGACCCCTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACTG 1156
|||||||||||||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||||||||.|
Sbjct 2800 GATGCAGTTCCAGAGAATCCTCGACGACCCTTCCCCACCTCAGCCTGGGGAGGAGAAGCTGGCAGCCCTCACCG 2873
Query 1157 CAGGAGGAAGGGTGGAGTGGGCGCAGGCACGCCAGGCCTTCTTTAGCTCTGGAAAGAATAAGGCTGCCT-TGGA 1229
|||||||||||||.||||||||..|||||||.|||.|||||||.||||||||.|||||.|| |.||.|| ||||
Sbjct 2874 CAGGAGGAAGGGTAGAGTGGGCAGAGGCACGTCAGACCTTCTTCAGCTCTGGCAAGAACAA-GATGTCTCTGGA 2946
Query 1230 GGCCATCGAGCGTGCCGCTTTCTTCGTGGCCCTGGATGAGGAATCCTACTCCTATGACCCCGAAGATGAGGCCA 1303
.||||||||.|||||.||||||||.|||.||||||||||.||.||..|.|.|||..||||.||.||||||.|||
Sbjct 2947 CGCCATCGAACGTGCTGCTTTCTTTGTGACCCTGGATGAAGATTCTCATTGCTACAACCCTGACGATGAGACCA 3020
Query 1304 GCCTCAGCCTCTATGGCAAGGCCCTGCTACATGGCAACTGCTACAACAGGTGGTTTGACAAATCCTTCACTCTC 1377
|.||.||||||||.|||||.|||.||||.||||||||||||||.||||||||||||||||||||.|||||.||.
Sbjct 3021 GTCTTAGCCTCTACGGCAAAGCCTTGCTCCATGGCAACTGCTATAACAGGTGGTTTGACAAATCTTTCACCCTT 3094
Query 1378 ATTTCCTTCAAGAATGGCCAGTTGGGTCTCAATGCAGAGCATGCGTGGGCAGATGCTCCCATCATTGGGCACCT 1451
||.||||.|||||||||||.|||.||.|||||..|.||.||..||||||||||.||.|||||||||||||||||
Sbjct 3095 ATCTCCTGCAAGAATGGCCTGTTAGGCCTCAACACCGAACACTCGTGGGCAGACGCGCCCATCATTGGGCACCT 3168
Query 1452 CTGGGAGTTTGTCCTGGGCACAGACAGCTTCCACCTGGGCTACACGGAGACCGGGCACTGCCTGGGCAAACCGA 1525
|||||||||||||||||||||.||.|.|||.||||||||||||||||||||.||.|||||..||||..|.||.|
Sbjct 3169 CTGGGAGTTTGTCCTGGGCACTGATACCTTTCACCTGGGCTACACGGAGACAGGACACTGTGTGGGTGAGCCAA 3242
Query 1526 ACCCTGCGCTCGCACCTCCTACA-CGGCTGCAGTGGGACATTCCAAAACAGTGCCAGGCGGTCATCGAGAGTTC 1598
||.|..||.|..||||.||| || |||||||.||||||||||||..|.|||||||.||..|.||||||||..||
Sbjct 3243 ACACCACGTTGCCACCCCCT-CAGCGGCTGCCGTGGGACATTCCCGAGCAGTGCCGGGAAGCCATCGAGAACTC 3315
Query 1599 CTACCAGGTGGCCAAGGCGTTGGCAGACGACGTGGAGTTGTACTGCTTCCAGTTCCTGCCCTTTGGCAAAGGCC 1672
.|||||.||.||||||||..||||.||.|||||||||.|.|||||||||||||||.|.||||||||||||||.|
Sbjct 3316 GTACCAAGTAGCCAAGGCACTGGCCGATGACGTGGAGCTCTACTGCTTCCAGTTCTTACCCTTTGGCAAAGGTC 3389
Query 1673 TCATCAAGAAGTGCCGGACCAGCCCTGATGCCTTTGTGCAGATCGCGCTGCAGCTGGCTCACTTCCGGGACAGG 1746
|.|||||||||||..||||||||||.||.||.|||||||||||.||.||.|||||||||||.||||||||||..
Sbjct 3390 TTATCAAGAAGTGTAGGACCAGCCCCGACGCTTTTGTGCAGATTGCCCTACAGCTGGCTCATTTCCGGGACAAA 3463
Query 1747 GGTAAGTTCTGCCTGACCTATGAGGCCTCAATGACCAGAATGTTCCGGGAGGGACGGACTGAGACTGTGCGTTC 1820
||.||||||||||||||.||.||||||||.|||||.|||||||||||.|||||.||||||||||||||||||||
Sbjct 3464 GGCAAGTTCTGCCTGACTTACGAGGCCTCGATGACAAGAATGTTCCGAGAGGGGCGGACTGAGACTGTGCGTTC 3537
Query 1821 CTGTACCAGCGAGTCCACAGCCTTTGTGCAGGCCATGATGGAGGGGTCCCACACAAAAGCAGACCTGCGAGATC 1894
||||||||.|||||||.|||||||||||||||||||||||.||||||||||.|..|||..||||||.|.|||||
Sbjct 3538 CTGTACCAACGAGTCCGCAGCCTTTGTGCAGGCCATGATGAAGGGGTCCCATAAGAAACAAGACCTCCAAGATC 3611
Query 1895 TCTTCCAG-AAGGCTGCTAAGAAGCACCAGAATATGTACCGCCTGGCCATGACCGGGGCAGGGATCGACAGGCA 1967
||||||.| |||.||.|.|| ||||||||.||.|||||||||||.||||||||.|||||.|||||||||.||||
Sbjct 3612 TCTTCCGGAAAGCCTCCGAA-AAGCACCAAAACATGTACCGCCTAGCCATGACAGGGGCTGGGATCGACCGGCA 3684
Query 1968 CCTCTTCTGCCTTTACTTGGTCTCCAAGTACCTAGGAGTCAGCTCTCCTTTCCTTGCTGAGGTGCTCTCGGAAC 2041
||||||||||||||||.|.||||||||||||.|||||||.||||||||||||||.||||||||.||.||.||||
Sbjct 3685 CCTCTTCTGCCTTTACATCGTCTCCAAGTACTTAGGAGTTAGCTCTCCTTTCCTGGCTGAGGTACTTTCTGAAC 3758
Query 2042 CCTGGCGTCTCTCCACCAGCCAGATCCCCCAATCCCAGATCCGCATGTTCGACCCAGAGCAGCACCCCAATCAC 2115
|||||.|.|||||||||||||||||||||||.|.|||||||.|||||||.||||||.|.|||.|.||||||||.
Sbjct 3759 CCTGGAGCCTCTCCACCAGCCAGATCCCCCAGTTCCAGATCTGCATGTTTGACCCAAAACAGTATCCCAATCAT 3832
Query 2116 CTGGGCGCTGGAGGTGGCTTTGGCCCTGTAGCAGATGATGGCTATGGAGTTTCCTACATGATTGCAGGCGAGAA 2189
|||||.|||||||||||||||||.||.||.||.|||||||||||.||.||.||.||||||||.|||||.||.||
Sbjct 3833 CTGGGTGCTGGAGGTGGCTTTGGTCCCGTGGCGGATGATGGCTACGGGGTCTCTTACATGATCGCAGGAGAAAA 3906
Query 2190 CACGATCTTCTTCCACATCTCCAGCAAGTTCTCAAGCTCAGAGACGAACGCCCAGCGCTTTGGAAACCACATCC 2263
|||.||.||||||||||||||||||||.|.||||||.||||||||||||||||||||||||||.||||||||||
Sbjct 3907 CACCATGTTCTTCCACATCTCCAGCAAATACTCAAGTTCAGAGACGAACGCCCAGCGCTTTGGGAACCACATCC 3980
Query 2264 GCAAAGCCCTGCTGGACATTGCTGATCTTTTCCAAGTTCCCAAGGCCTACAGC--------------------- 2316
||.||||.|||.|||||||.||.||.||||||.||.||.|||||.|..|||||
Sbjct 3981 GCCAAGCACTGTTGGACATCGCCGAACTTTTCAAAATTTCCAAGACAGACAGCTGAGGAAAAGAGATACCCCAG 4054
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4055 CTGCCCTCTGGTCCCCACCTGGTGGAAGAAGAGGCCTGTGGCCAGCTCACAGGCATAAGGGGTGGCGTGCACAC 4128
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4129 ACGCCCAGTTCGGAGAACAGCTCTTGAGGCAGTGCTCCCCGGAGGAGGCAGTGCTCCCTGGGCAGATACTGCTC 4202
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4203 CTCTAGGGCCCCCGCTGGAGGTGGGATTGGAGCAGCAGGGGAATTTTGATTTTTTTTTTTTTTTTTTGGCTTGG 4276
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4277 TAGATGTTAATAAAAATAAGGCTGTATAATTCTTACTTGGCTGTTAGGTGCCTATGTTTTTGTTAGAGAACGAT 4350
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4351 AAGGCCCTTTCCTGCCCCAGCTCAGCCTAGGATGGAGGCGATGGAAGGGGTCGGAGAATGTTCATAATGGGCTT 4424
Query 2317 -------------------------------------------------------------------------- 2316
Sbjct 4425 CTTACCTGCTTTGAAATGGGTGCTCTTCTTGAATAATGCGGACTTGGAGAGCGCTGTCCAACCTCTCATGTGCA 4498
Query 2317 ------------------------------------------------- 2316
Sbjct 4499 CTTGGAATAAATTCTTACTTTAGAACCTTAAAAAAAAAAAAAAAAAAAA 4547
