Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_06056
• Subject: NM_001289912.2
• Aligned Length: 1285
• Identities: 989
• Gaps: 77

Alignment

Query    1  ATGGAGCTGAGAGTCGGGAACAGGTACCGGCTGGGCCGGAAGATCGGCAGCGGCTCCTTCGGAGACATCTATCT  74
            ||||||||..|.||.|||||||.||||||.|||||.|||||||||||.|||||.|||||||||||.|||||.||
Sbjct    1  ATGGAGCTACGTGTGGGGAACAAGTACCGCCTGGGACGGAAGATCGGGAGCGGGTCCTTCGGAGATATCTACCT  74

Query   75  CGGTACGGACATTGCTGCAGGAGAAGAGGTTGCCATCAAGCTTGAATGTGTCAAAACCAAACACCCTCAGCTCC  148
            .|||.|..||||.||..|.||.||.||.||.|||||||||||.||.|||||.||.||.||.|||||.|||||.|
Sbjct   75  GGGTGCCAACATCGCCTCTGGTGAGGAAGTCGCCATCAAGCTGGAGTGTGTGAAGACAAAGCACCCCCAGCTGC  148

Query  149  ACATTGAGAGCAAAATCTACAAGATGATGCAGGGAGGAGTGGGCATCCCCACCATCAGATGGTGCGGGGCAGAG  222
            ||||.||||||||..|||||||||||||||||||.||.|||||.|||||..||||||..||||||||.||.|||
Sbjct  149  ACATCGAGAGCAAGTTCTACAAGATGATGCAGGGTGGCGTGGGGATCCCGTCCATCAAGTGGTGCGGAGCTGAG  222

Query  223  GGGGACTACAACGTCATGGTGATGGAGCTGCTGGGGCCAAGCCTGGAGGACCTCTTCAACTTCTGCTCCAGGAA  296
            ||.|||||||||||.|||||.|||||||||||||||||.|||||.||||||||.|||||||||||.|||.|.||
Sbjct  223  GGCGACTACAACGTGATGGTCATGGAGCTGCTGGGGCCTAGCCTCGAGGACCTGTTCAACTTCTGTTCCCGCAA  296

Query  297  ATTCAGCCTCAAAACCGTCCTGCTGCTT-GCTGACCAAATGATCAGTCGCATCGAATACATTCATTCAAAGAAC  369
            ||||||||||||.||.||.||||| ||| ||.|||||.||||||||.||||||||.||.||.||.||.||||||
Sbjct  297  ATTCAGCCTCAAGACGGTGCTGCT-CTTGGCCGACCAGATGATCAGCCGCATCGAGTATATCCACTCCAAGAAC  369

Query  370  TTCATCCACCGGGATGTGAAGCCAGACAACTTCCTCATGGGCCTGGGGAAGAAGGGCAACCTGGTGTACATCAT  443
            ||||||||||||||.||.|||||.|||||||||||||||||.|||||||||||||||||||||||.||||||||
Sbjct  370  TTCATCCACCGGGACGTCAAGCCCGACAACTTCCTCATGGGGCTGGGGAAGAAGGGCAACCTGGTCTACATCAT  443

Query  444  CGACTTCGGGCTGGCCAAGAAGTACCGGGATGCACGCACCCACCAGCACATCCCCTATCGTGAGAACAAGAACC  517
            |||||||||.||||||||||||||||||||.||.|||||||||||||||||.|||||.||.||.||||||||||
Sbjct  444  CGACTTCGGCCTGGCCAAGAAGTACCGGGACGCCCGCACCCACCAGCACATTCCCTACCGGGAAAACAAGAACC  517

Query  518  TCACGGGGACGGCGCGGTACGCCTCCATCAACACGCACCTTGGAATTGAACAATCCCGAAGAGATGACTTGGAG  591
            |.||.||.|||||.||.|||||.|||||||||||||||||.||.|||||.|||..|||..||||||||.|||||
Sbjct  518  TGACCGGCACGGCCCGCTACGCTTCCATCAACACGCACCTGGGCATTGAGCAAAGCCGTCGAGATGACCTGGAG  591

Query  592  TCTCTGGGCTACGTGCTAATGTACTTCAACCTGGGCTCTCTCCCCTGGCAGGGGCTGAAGGCTGCCACCAAGAG  665
            ...||||||||||||||.||||||||||||||||||||.||.||||||||||||||.||.||.|||||||||.|
Sbjct  592  AGCCTGGGCTACGTGCTCATGTACTTCAACCTGGGCTCCCTGCCCTGGCAGGGGCTCAAAGCAGCCACCAAGCG  665

Query  666  ACAGAAATACGAAAGGATTAGCGAGAAGAAAATGTCCACCCCCATCGAAGTGTTGTGTAAAGGCTACCCTTCCG  739
            .|||||.||.|||.||||.|||||||||||.|||||.||.||||||||.||..|.||.||||||||.||.||||
Sbjct  666  CCAGAAGTATGAACGGATCAGCGAGAAGAAGATGTCAACGCCCATCGAGGTCCTCTGCAAAGGCTATCCCTCCG  739

Query  740  AATTTGCCACATACCTGAATTTCTGCCGTTCCTTGCGTTTTGACGACAAGCCTGACTACTCGTACCTGCGGCAG  813
            ||||..|.||||||||.||.||||||||.|||.||||.||||||||||||||.||||||||.|||||.||.|||
Sbjct  740  AATTCTCAACATACCTCAACTTCTGCCGCTCCCTGCGGTTTGACGACAAGCCCGACTACTCTTACCTACGTCAG  813

Query  814  CTTTTCCGGAATCTGTTCCATCGCCAGGGCTTCTCCTATGACTACGTGTTCGACTGGAACATGCTCAAATTTGG  887
            ||.|||||.||.||.|||||.||.|||||||||||||||||||||||.||.||||||||||||||.|||||.||
Sbjct  814  CTCTTCCGCAACCTCTTCCACCGGCAGGGCTTCTCCTATGACTACGTCTTTGACTGGAACATGCTGAAATTCGG  887

Query  888  TGCCAGCCGGG---CCGCCGATGACGCCGAGCGGGAGCG-------CAGGGACCGAGAGGAGCGGCTGAGACA-  950
            || |||||.||   |  ||||.||.|..||.||||||||       || .||.||.||||||.||.||.|.|| 
Sbjct  888  TG-CAGCCCGGAATC--CCGAGGATGTGGACCGGGAGCGGCGAGAACA-CGAACGCGAGGAGAGGATGGGGCAG  957

Query  951  CT-CGCGGAACCCGGCTACCCGCGGCCTCCCTTCCACAGCCTCC--GGCCGCCTGCGGGGGACGCAG-GAAGTG  1020
            || ||.||..||  ||.|||||.|.|||          |||.||  |.||.||..||||||.|.|.| .||..|
Sbjct  958  CTACGGGGGTCC--GCGACCCGAGCCCT----------GCCCCCTGGCCCACCCACGGGGGCCACTGCCAACCG  1019

Query 1021  GCTCC------CCCCACACCCC-------TCACCCCTACCTCACACA------CGGCT---AACACCTCCCCCC  1072
            |||||      ||.|..|.|||       .|||.||..||||.|.||      |||||   ||.||.||.|||.
Sbjct 1020  GCTCCGCAGTGCCGCCGAGCCCGTGGCTTCCACGCCAGCCTCCCGCATCCAGCCGGCTGGCAATACTTCTCCCA  1093

Query 1073  GGCCTGTCTC-CGGCATGGAGAGAGAGCGGAAAGTGAGTATGCGGCTGCACCGCGGGGCCCCCGTCAACATCTC  1145
            |..|..|||| ||| .|.||..|.|||.||||.|||||||||.||||||||.|.||.||.||||.||||.||||
Sbjct 1094  GAGCGATCTCGCGG-GTCGACCGGGAGAGGAAGGTGAGTATGAGGCTGCACAGGGGTGCGCCCGCCAACGTCTC  1166

Query 1146  CTCGTCCGACCTCACAGGCCGACAAGATACCTCTCGCATGTCCA-CCTCACAGATTCCTGGTCGGGTGGCTTCC  1218
            |||.||.||||||||.||.||.|||||...|||.||.|| .||| |||||||||        |..|||  |.||
Sbjct 1167  CTCCTCAGACCTCACTGGGCGGCAAGAGGTCTCCCGGAT-CCCAGCCTCACAGA--------CAAGTG--TGCC  1229

Query 1219  AGTGGTCTTCAGTCTGTCGTGCACCGA  1245
            |.|.|.|  ||   |.|||.|.|.   
Sbjct 1230  ATTTGAC--CA---TCTCGGGAAG---  1248