Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06379
- Subject:
- XR_001743373.1
- Aligned Length:
- 3245
- Identities:
- 882
- Gaps:
- 2241
Alignment
Query 1 ----------------------ATGGTGGTCATGGCACCCCGAACCCTCTTCCTGCTACTCTCGGGGGCCCTGA 52
.||| |||||||||.|||||||.||||.|||||||.|||||.|||||||||.
Sbjct 1 ATATTTTTCCCAGACGCGGAGGTTGG-GGTCATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGG 73
Query 53 CCCTGACCGAGACCTGGGCGGGCTCCCACTCCATGAGGTATTTCAGCGCCGCCGTGTCCCGGCCCAGCCGCGGG 126
||||||||||.||.||||||||||||||||||.||||||||||||||.||||.|||||.||||||.||||||||
Sbjct 74 CCCTGACCGATACTTGGGCGGGCTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGG 147
Query 127 GAGCCCCGCTTCATCGCCATGGGCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACTCGGCGTGTCC 200
||||||||||.|||||||.|||..|||||.|||||||||||.|||.|||||||||||||||||.|.|||..|||
Sbjct 148 GAGCCCCGCTACATCGCCGTGGAGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCC 221
Query 201 GAGGATGGAGCCGCGGGCGCCGTGGGTGGAGCGGGAGGGGCCAGAGTATTGGGAAGAGGA-GACACGGAACACC 273
|||||||||||||||||.||||||||||||||..||||||||..||||||||| ||.||| .|||.||.||.||
Sbjct 222 GAGGATGGAGCCGCGGGAGCCGTGGGTGGAGCAAGAGGGGCCGCAGTATTGGG-AGTGGACCACAGGGTACGCC 294
Query 274 AAGGCCCACGCACAGACTGACAGAATGAACCTGCAGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCAGTTC 347
||||||.||||||||||||||.||.||..||||..||.|||||.|.||..||||||||||||||||||..|.||
Sbjct 295 AAGGCCAACGCACAGACTGACCGAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGGTC 368
Query 348 TCATACCCTCCAGTGGATGATTGGCTGCGACCTGGGGTCCGACGGACGCCTCCTCCGCGGGTATGAACAGTATG 421
|||.|||||||||.|.||||.||||||||||.|||||.||||||||||||||||||||||||||.|.|||.|.|
Sbjct 369 TCACACCCTCCAGGGAATGAATGGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACG 442
Query 422 CCTACGATGGCAAGGATTACCTCGCCCTGAACGAGGACCTGCGCTCCTGGACCGCAGCGGACACTGCGGCTCAG 495
|.|||||.||||||||||||.||.|||||||||||||||||||||||||||||||.||||||||.|.|||||||
Sbjct 443 CGTACGACGGCAAGGATTACATCTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAG 516
Query 496 ATCTCCAAGCGCAAGTGTGAGGC---GGCCAATGTGGCTGAACAAAGGAG---AG--CCTACCTGGAGGGCACG 561
|||.||.|||||...|.|||||| || |||.|| ||.||||| || ||||||||||||||..|
Sbjct 517 ATCACCCAGCGCTTCTATGAGGCAGAGG--AATATG------CAGAGGAGTTCAGGACCTACCTGGAGGGCGAG 582
Query 562 TGCGTGGAGTGGCTCCACAGATACCTGGAGAACGGGAAGGAGATGCTGCAGCGCGCGGACCCCCCCAAGACACA 635
|||.||||||.|||||.|||||||.|||||||.||||||||||.|||.||||||||.||.||.||.|||.||||
Sbjct 583 TGCCTGGAGTTGCTCCGCAGATACTTGGAGAATGGGAAGGAGACGCTACAGCGCGCAGATCCTCCAAAGGCACA 656
Query 636 CGTGACCCACCACCCTGTCTTTGACTATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGA 709
|||..||||||||||..|||.||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CGTTGCCCACCACCCCATCTCTGACCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGA 730
Query 710 TCATACTGACCTGGCAGCGGGATGGGGAGGACCAGACCCAGGACGTGGAGCTCGTGGAGACCAAGCCTGCAGGG 783
|||..||||||||||||||||||||||||||.||||||||||||...|||||.||||||||||.||||||||||
Sbjct 731 TCACGCTGACCTGGCAGCGGGATGGGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGG 804
Query 784 GATGGAACCTTCCAGAAGTGGGCAGCTGTGGTGGTGCCTTCTGGAGAGGAGCAGAGATACACGTGCCATGTGCA 857
|||||||||||||||||||||||.|||||||||||||||.||||||||||.|||||||||||.|||||||||||
Sbjct 805 GATGGAACCTTCCAGAAGTGGGCCGCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCA 878
Query 858 GCATGAGGGGCTGCCGGAGCCCCTCATGCTGAGATGGAAGCAGTCTTCCCTGCCCACCATCCCCATCATGGGTA 931
|||.|||||||||||..||||||||||.|||||||||.||||||||.|||.||||||||||||||||.||||.|
Sbjct 879 GCACGAGGGGCTGCCCCAGCCCCTCATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCA 952
Query 932 TCGTTGCTGGTCTGGTTGTCCTTGCAGCTGTAGTCACTGGAGCTGCGGTCGCTGCTGTGCTGTGGAGGAAGAAG 1005
||||||||||.||.||||||||||.||||||.|||||||||||||.|||||||||||||.||||||||||||||
Sbjct 953 TCGTTGCTGGCCTTGTTGTCCTTGGAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAG 1026
Query 1006 AGCTCAGAT----------------------------------------------------------------- 1014
|||||||||
Sbjct 1027 AGCTCAGATAGAAACAGAGGGAGCTACTCTCAGGCTGCAGCCTACTCAGTGGTCAGCGGAAACTTGATGATAAC 1100
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1101 ATGGTGGTCAAGCTTATTTCTCCTGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCT 1174
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1175 TGGGCCGCCGGAAGGAAAGTTGACTCATACTGGTGTCCAGTGAAGAAACCCAGGCGCATAAGAGGGACAGTTGG 1248
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1249 ATCTCAGGGAGGACTGTCTTCTTCTCACCTCCCCGGACGATGCTTCTTGACACAGGAAAGAGGATGTGCTGCTA 1322
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1323 GGGTCATCATGTCCTGGTTTATTGTGTTGTCAGTAGAATGAAATCAAAATACATACTTCATAAATAATAAAATA 1396
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1397 ACCCATAATAAGTAAACATTTACAATTTACTCACACCATTGAGGTTTCCTCCAGGTGTGAGCACAGCTGCAGAC 1470
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1471 ACACCTTGTCGCTTCAGTCAGGACACAGGACAGAGTAAAATGGGAAGAAACCACAGTCACTGCAGAAAGGGCCC 1544
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1545 CCATGGAAGAGGCCTGGCAGGGAGGCCAGCTGCCCCAGGGCCACCATATTTAGAGATGACTTCCCCTTTCTAGG 1618
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1619 CAGGACTGGGATTTTAAAATTCTTTTTGTATTCATAGTTGTTCTGAAATTGCAGGATGATGAGACCCAGCACTG 1692
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1693 GTGAGTTATACTGTCTCTTTCTTCCCTATTAAATTCTGTGCCAAACAGCACCTTCATATATTTATCTCCTCTTC 1766
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1767 CTGGAGAGAATAAAAACAATGGAAAAATTGAACCATACAAACATACTTTAAATATGTGCTGTCAGAAGTAGCTA 1840
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1841 CTAAAGGATTAATTCCACCAAAGTGAGGGAAGGTTTGAAAAGAAAAACATTGTATACCCATATTCAAAGCAGCA 1914
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1915 TTATTCACGATAGCCAAGACAACACACACCAACACATGAATGAAGAAAATGTGGTATATATCGACAACGGAATA 1988
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 1989 TCATTCAGCCTTAAGAAGGAAACCTGGTCACAGGCTGCAACAGGGATAAACCTGAAGGACACTGCTAAGTAAAA 2062
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2063 TAAGCCAATCACAAAGAAAACCCAATACTGCACATTTCCATTTATATGAGGTGTCTAAACTGAAAGTAGACTAA 2136
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2137 TGGCTGCTAGGGGCTCGGTGAGGGGGATGGATGAATGTTTGTTCAATGGGCATAGAGTTTCAGTGTTGCAAGAT 2210
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2211 GAAAAGTTCTAGAGATCTGTTGCACAACTATGTATTTACAGTTAATACTGTACTACTGTATACTTTAAAATAGT 2284
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2285 TAAGATACCAAATTTTACATAATGTAGTTTTTGGCCCAAGGAAAAGACTAATTAGCCCTGTTACTAATTTAGGG 2358
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2359 AAAAAGTACATGAATTCATTAAAAATATATTAGTATGCGCTTACCTTAGATACAGAAAACTATGAGACAAAAAG 2432
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2433 AGAGATCCCTGCTACCCCAGCTATCACCCATGAACCAGGAAAATCAGCACCTCCTGAAACTAGACAGAAAGGCT 2506
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2507 CACAGGCCCAGCCTTGACATGTTGAATCAGTCTGCATTTTGGCTGGAACCCAGGTGGCTCCACTGCATGTAAAG 2580
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2581 CACCTTCCCAGATAGTGATGGAGGGAGATCCTAGGACAGTGACTCTGCTCCACGGGGAGAAGCCTCCAGTCCAG 2654
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2655 ATGGGAGCAGCCAGAAGGGCCCAGGAGGGACATTTCCAAGAAGATAAAATTAACAGAATGTCCAAAGTGTCCAA 2728
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2729 CGTCTTGAAAGAATCATACAAACAAAAGAGATATCAAACTTAAATTAATGAGAGTTAATAAAATAAACAAAAAC 2802
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2803 AAATGCAAGTATTAACTCCAAGAAGAACCAATGTTGTACAGGCAGTGAAAAGTAGTCCAGTTGACATATGAGAG 2876
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2877 GATTAGTCATGGTAAAAGAAACAAGAGATGGCTGAACTAAACATAATCACTATATAAATATACTGGGAAGAGTG 2950
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 2951 AAAGAGAACAAGTACTCTTAACTGTTGCATCCACCATTGCGCTGTGCAACAATGGGTGCATCTGAAAAAAATCA 3024
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3025 AGCAATAATAATAAAGAAATGGTAGTTAGAGATACAGAAGTAAAGTCAAAAGAATCAGCTAAAAAACTTGAAAG 3098
Query 1015 -------------------------------------------------------------------------- 1014
Sbjct 3099 TGGTTGGCCCCTAGAAAGGCAGAAATTGAGAAGAGGCAGAGAGGACTCTCATTTTTCTCAAGAGATTCTGCACA 3172
Query 1015 --------------------------------------------------------------- 1014
Sbjct 3173 AATATTTGACTCTTTCAATTGTGCACAATTATAAATTTGATTAAAATAAAAACAAAAGCTTCA 3235
