Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06380
- Subject:
- XR_001754835.1
- Aligned Length:
- 5044
- Identities:
- 2177
- Gaps:
- 2866
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CATGCTCATCACGCTGTGCTACCTGTACCTGTGGGCGCGCTGGGGTCGCCGGCCGGCTGAGCTCGTGCGCGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGTGCGGCGGCTGCGTGCCTCGCGCTGTTCCTTCACCTTCTGCGGCGCGGCCGCGCAGCCCCCGGGCGCCCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGTGCCTGAGCCGTGGCGGCCGCGTCTTCTGCGTCAGCGACAGCCAGTCCATTGAAGACTTGAACAAGTGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTATTTCTTGTGTCTCCTTTTATACTTGAAGCAGAACACATAGCATTTGTGACGGAGAGCATTTGGGTACAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGAGAATTTACAGAGATCATCCTCTTCAGAAACAATTGTCAAGTGGTCAGACTGTTGTTTGCCATTAGCTTGC 370
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 371 AGACCTGGGGATCCTTATCGGCTAATTGCTGAAGCAAGTGTGGACAACTTCAGCAAGCTGGGGGTGGCGTTCAT 444
Query 3 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 518
Query 77 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 592
Query 151 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 666
Query 225 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 740
Query 299 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 814
Query 373 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 888
Query 447 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 962
Query 521 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 1036
Query 595 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 1110
Query 669 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 1184
Query 743 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 1258
Query 817 TCCAAGGCTGACCAGAGTGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 890
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCCAAGGCTGACCAGAGCGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 1332
Query 891 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 1406
Query 965 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1480
Query 1039 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1554
Query 1113 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1628
Query 1187 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1702
Query 1261 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1776
Query 1335 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1850
Query 1409 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1924
Query 1483 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATG 1998
Query 1557 TGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATC 1630
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATC 2072
Query 1631 TGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGG 1704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 TGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGG 2146
Query 1705 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 2220
Query 1779 ATTTTATATACTTATT---------------------------------------------------------- 1794
||||||||||||||||
Sbjct 2221 ATTTTATATACTTATTGTAAGGTTGAGATGGTTTTAGCTTGAACAAGAATAATAAAAGAAGGACAAAAAGGAAG 2294
Query 1795 -------------------------------------------------------------------------- 1794
Sbjct 2295 ATGGACAGAAATACATGTCACTCTTCAAGTGGTTAGAGACACGAAATCTGAAATGAGGACAAGGAAGGAGGAAG 2368
Query 1795 -------------------------------------------------------------------------- 1794
Sbjct 2369 TTGACAGTCAAGACTGTAACTTTTTCCATGTGGCAGAGAGGAATGTGTGATGCCATCAACAGGCTGAGCTGCTC 2442
Query 1795 -------------------GGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCA 1849
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AATTGTTTGTTTTTGTCCAGGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCA 2516
Query 1850 TCACAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTG 1923
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TCACAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTG 2590
Query 1924 ACTGTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATA 1997
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 ACTGTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATA 2664
Query 1998 CTGGGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACG 2071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CTGGGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACG 2738
Query 2072 ATTCTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGAC 2145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 ATTCTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGAC 2812
Query 2146 ATGCTGAGAAACCTCATCCTCCCCAAACGGCGG----------------------------------------- 2178
|||||||||||||||||||||||||||||||||
Sbjct 2813 ATGCTGAGAAACCTCATCCTCCCCAAACGGCGGTAATGCCGGGCGTCCCCGAGACGCGGCTGCCTGTCCGTGCC 2886
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2887 CATGCATCTGGAAATCTAATTTAGAGTTGTAGGTGAATTTTCTTTTCCTCCAATTCATTTGTTAAGTCTTTGTT 2960
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2961 CTTTTTCTGTGTTTCTGTTTGTTTTTAGGTTTGTTTTGTTGTCGTTTTCTTTGGTGTTTGAAGAGGCTCTGGGA 3034
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3035 TAGATGGTTAAGAAGTAGAAAATTTAGTTTAGGGAAAGCCCTCCCACAGGTGGGAAATTGCTCTCCCCTCTGTG 3108
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3109 GCTTGGACTTACGTTTATTGTCAAGGGGAGTTTTTACATGGAAATGACAATGGGAAAATTCAGATATTTTCTTA 3182
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3183 GTAGTGCAGACCTTTACCCCTAGTCTATGAAAAAACAAACCAAAATATGCTCTTGCGCCCAGGCCAGTGGTGAG 3256
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3257 TTAGAGGTATGCTATCACTGTTTGTAAGCATCTGGGGAGGTACTGAACTGTAAGAACATGCTTGGACACTTAGT 3330
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3331 CATTGTTCTGTGTTTTTATTAATGAAGAAAAGGGAAGACAGACTTCCAAGAGTTACTGTCCACCCGGTGGTGTG 3404
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3405 GCCCCATAGCGAAGTCTAAATGCCTGTAGAGATAGAGCTAGCTGGTGTGGTTGCAGTGACCTTGTAGAGGAAAT 3478
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3479 CAGTTCATTACTTTGACATCATTCAGTGAGCTCTCCTTTCCTAAGGAAGTTTAAATGTCCTTAGTTAGGGACTG 3552
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3553 ACTTTCTTAAGTAAGTTTAAATTTACTACATATTGTGAAGAGACAGGATCAAGTTCAGAATCCTTAAATGTCTG 3626
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3627 ATTAGGCATCACTTGGATGAGGAGGTGGGCGATTTGGCTCTGACAGCTGGAGATGAAGGCACACTCATACCACA 3700
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3701 TACAAGGGAGGATTTGGAGCTTTTAAGCCAGTTTCAGATTTACTCTGAAATGTGGAGCATTCCTGCAAGACTGT 3774
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3775 GCAGCTCACGGAATATAGAAGACATGGCATTTTACTCAGAAGTCATAAGTTTTTGCCCCCCTCATTTACCTCGT 3848
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3849 ATTACCAAGAAAGAAAATGTTATCGATACTAAACACCATCAGTTCAGAGGGAGGATGTGTGTGTGTGCCCGCAT 3922
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3923 ATGTGTGTGCGTGCGTGTGTGCGCACATAGCTTTAAAAGAAGACATTCAAAATTTGATGTGCTACAAGCCTCAT 3996
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3997 GAAAGAACAAAAGAAATGAAGCCTTTTGATATGCATTCGCTATTCCCAGATGTACGCCATGCCTTTTCCATGTC 4070
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4071 CCTCCTATCTCTGTTGAACTTATGAATCATACTCATTACTTTTCAGCTTTTTAAAAGGCCAATTTTTGTCCAGT 4144
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4145 TTTCTCTCTTCCAGTCCCAGCTGAAATTAGTGGAAAGAAAGTTTGATGGAGCTTTCAGCTTTGAACAAAATCCC 4218
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4219 TTCATTGTAAACTAGCACCATCTTTATCCAGGTCTTACCCAGTCAGGCTAATTCCAGAAACTTGTGGTTTTTAG 4292
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4293 TATAGTCTGTCTACCTTTAGCCAGGCACAGGACAGCCCTATGAAAAAATACCCAATATATATTTTTTGGAAATG 4366
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4367 AAACATTAAAAGAACTTAAAAAGTAATTTTTGGAAATGAGGCTTCAATTAGAATTATTTTTCTCAAAAAACAAA 4440
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4441 CAAACAAAAAACACAAAAAAAACCACTCTTCTCCAAATGCCCAAGCCTTCTTTCAAAATTAGTTAGAAACTTAA 4514
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4515 GTAAAATACAAGTCCACACCATCCCCAAATTACAAAATGGACTTACCCTTGAGAGGGCATCTGCAGAATATCAT 4588
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4589 CAGGGACAAAGATCTCGAGGCTAACGATGTAGGTTTCATTTCTCAGACTTTGTAATATAAGGCAAGCCCTCTCT 4662
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4663 CAGAGCTGCCATCATCACTTTTTGAATTTCTTTGGGGGTTATTTAATGAAAAACATGCTATGTTTTGTTTTAAG 4736
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4737 CTGAAGTCCTATTCTGGACACTCTGCTTTGGGAAAAAATGTTATCATTTAATTTCCTTTCTGCAAATTAAAACT 4810
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4811 AATGAAGTGTGGCCTTGTCAAAGGCTATGGAGATGTTCCGGGCATACTGCTGTGCTCTGTGCTTTCCAGCAGGC 4884
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4885 GCTCCTCCCTCACGCAGGAGACTCAGTTGTCCTGAGAGAGATGAAGCAGCCTTGAAGCAGATGCTGCGTTTTCC 4958
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4959 ATAAACCTGATTTTGCCTCACATGAACCAAAGACTCTCAAAACTCCGCTTCTATAGAATTAGCTGAATAAAGGC 5032
Query 2179 ------------ 2178
Sbjct 5033 ATTTTACTGATA 5044
