Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06380
- Subject:
- XR_001754836.1
- Aligned Length:
- 4819
- Identities:
- 2016
- Gaps:
- 2802
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CATGCTCATCACGCTGTGCTACCTGTACCTGTGGGCGCGCTGGGGTCGCCGGCCGGCTGAGCTCGTGCGCGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGTGCGGCGGCTGCGTGCCTCGCGCTGTTCCTTCACCTTCTGCGGCGCGGCCGCGCAGCCCCCGGGCGCCCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGTGCCTGAGCCGTGGCGGCCGCGTCTTCTGCGTCAGCGACAGCCAGTCCATTGAAGACTTGAACAAGTGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTATTTCTTGTGTCTCCTTTTATACTTGAAGCAGAACACATAGCATTTGTGACGGAGAGCATTTGGGTACAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGAGAATTTACAGAGATCATCCTCTTCAGAAACAATTGTCAAGTGGTCAGACTGTTGTTTGCCATTAGCTTGC 370
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 371 AGACCTGGGGATCCTTATCGGCTAATTGCTGAAGCAAGTGTGGACAACTTCAGCAAGCTGGGGGTGGCGTTCAT 444
Query 3 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 518
Query 77 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 592
Query 151 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 666
Query 225 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 740
Query 299 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 814
Query 373 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 888
Query 447 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 962
Query 521 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 1036
Query 595 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 1110
Query 669 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 1184
Query 743 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 1258
Query 817 TCCAAGGCTGACCAGAGTGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 890
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCCAAGGCTGACCAGAGCGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 1332
Query 891 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 1406
Query 965 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1480
Query 1039 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1554
Query 1113 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1628
Query 1187 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1702
Query 1261 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1776
Query 1335 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1850
Query 1409 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1924
Query 1483 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATG 1556
|||||||||||||||||||||||||||||||||||
Sbjct 1925 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAA--------------------------------------- 1959
Query 1557 TGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATC 1630
Sbjct 1960 -------------------------------------------------------------------------- 1959
Query 1631 TGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGG 1704
||||||||||||||||||||||||||
Sbjct 1960 ------------------------------------------------AGGATATCAACTTACGAGTGAAGTGG 1985
Query 1705 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 2059
Query 1779 ATTTTATATACTTATTGGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCATCA 1852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2060 ATTTTATATACTTATTGGCTGTGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGACCTCATCA 2133
Query 1853 CAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTGACT 1926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2134 CAGAATACAATAAACAACACAAGGCAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGAGTCGTGACT 2207
Query 1927 GTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATACTG 2000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2208 GTGCTGGAGAAACTGATCAAAGAGTTTCAGGACAAAGGGCCCAACAGCGTCCTTCCCCTTTATTACCGATACTG 2281
Query 2001 GGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACGATT 2074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2282 GGTCCACAGTGGTCAGCAAGTCCATCTGGGCAGCGCAGAGGGACCAAAGGTGTCCATCGTTGGCCTGGACGATT 2355
Query 2075 CTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATG 2148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2356 CTGGCTTCCTCCAGGTTCACCAGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATG 2429
Query 2149 CTGAGAAACCTCATCCTCCCCAAACGGCGG-------------------------------------------- 2178
||||||||||||||||||||||||||||||
Sbjct 2430 CTGAGAAACCTCATCCTCCCCAAACGGCGGTAATGCCGGGCGTCCCCGAGACGCGGCTGCCTGTCCGTGCCCAT 2503
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2504 GCATCTGGAAATCTAATTTAGAGTTGTAGGTGAATTTTCTTTTCCTCCAATTCATTTGTTAAGTCTTTGTTCTT 2577
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2578 TTTCTGTGTTTCTGTTTGTTTTTAGGTTTGTTTTGTTGTCGTTTTCTTTGGTGTTTGAAGAGGCTCTGGGATAG 2651
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2652 ATGGTTAAGAAGTAGAAAATTTAGTTTAGGGAAAGCCCTCCCACAGGTGGGAAATTGCTCTCCCCTCTGTGGCT 2725
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2726 TGGACTTACGTTTATTGTCAAGGGGAGTTTTTACATGGAAATGACAATGGGAAAATTCAGATATTTTCTTAGTA 2799
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2800 GTGCAGACCTTTACCCCTAGTCTATGAAAAAACAAACCAAAATATGCTCTTGCGCCCAGGCCAGTGGTGAGTTA 2873
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2874 GAGGTATGCTATCACTGTTTGTAAGCATCTGGGGAGGTACTGAACTGTAAGAACATGCTTGGACACTTAGTCAT 2947
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 2948 TGTTCTGTGTTTTTATTAATGAAGAAAAGGGAAGACAGACTTCCAAGAGTTACTGTCCACCCGGTGGTGTGGCC 3021
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3022 CCATAGCGAAGTCTAAATGCCTGTAGAGATAGAGCTAGCTGGTGTGGTTGCAGTGACCTTGTAGAGGAAATCAG 3095
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3096 TTCATTACTTTGACATCATTCAGTGAGCTCTCCTTTCCTAAGGAAGTTTAAATGTCCTTAGTTAGGGACTGACT 3169
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3170 TTCTTAAGTAAGTTTAAATTTACTACATATTGTGAAGAGACAGGATCAAGTTCAGAATCCTTAAATGTCTGATT 3243
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3244 AGGCATCACTTGGATGAGGAGGTGGGCGATTTGGCTCTGACAGCTGGAGATGAAGGCACACTCATACCACATAC 3317
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3318 AAGGGAGGATTTGGAGCTTTTAAGCCAGTTTCAGATTTACTCTGAAATGTGGAGCATTCCTGCAAGACTGTGCA 3391
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3392 GCTCACGGAATATAGAAGACATGGCATTTTACTCAGAAGTCATAAGTTTTTGCCCCCCTCATTTACCTCGTATT 3465
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3466 ACCAAGAAAGAAAATGTTATCGATACTAAACACCATCAGTTCAGAGGGAGGATGTGTGTGTGTGCCCGCATATG 3539
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3540 TGTGTGCGTGCGTGTGTGCGCACATAGCTTTAAAAGAAGACATTCAAAATTTGATGTGCTACAAGCCTCATGAA 3613
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3614 AGAACAAAAGAAATGAAGCCTTTTGATATGCATTCGCTATTCCCAGATGTACGCCATGCCTTTTCCATGTCCCT 3687
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3688 CCTATCTCTGTTGAACTTATGAATCATACTCATTACTTTTCAGCTTTTTAAAAGGCCAATTTTTGTCCAGTTTT 3761
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3762 CTCTCTTCCAGTCCCAGCTGAAATTAGTGGAAAGAAAGTTTGATGGAGCTTTCAGCTTTGAACAAAATCCCTTC 3835
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3836 ATTGTAAACTAGCACCATCTTTATCCAGGTCTTACCCAGTCAGGCTAATTCCAGAAACTTGTGGTTTTTAGTAT 3909
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3910 AGTCTGTCTACCTTTAGCCAGGCACAGGACAGCCCTATGAAAAAATACCCAATATATATTTTTTGGAAATGAAA 3983
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 3984 CATTAAAAGAACTTAAAAAGTAATTTTTGGAAATGAGGCTTCAATTAGAATTATTTTTCTCAAAAAACAAACAA 4057
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4058 ACAAAAAACACAAAAAAAACCACTCTTCTCCAAATGCCCAAGCCTTCTTTCAAAATTAGTTAGAAACTTAAGTA 4131
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4132 AAATACAAGTCCACACCATCCCCAAATTACAAAATGGACTTACCCTTGAGAGGGCATCTGCAGAATATCATCAG 4205
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4206 GGACAAAGATCTCGAGGCTAACGATGTAGGTTTCATTTCTCAGACTTTGTAATATAAGGCAAGCCCTCTCTCAG 4279
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4280 AGCTGCCATCATCACTTTTTGAATTTCTTTGGGGGTTATTTAATGAAAAACATGCTATGTTTTGTTTTAAGCTG 4353
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4354 AAGTCCTATTCTGGACACTCTGCTTTGGGAAAAAATGTTATCATTTAATTTCCTTTCTGCAAATTAAAACTAAT 4427
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4428 GAAGTGTGGCCTTGTCAAAGGCTATGGAGATGTTCCGGGCATACTGCTGTGCTCTGTGCTTTCCAGCAGGCGCT 4501
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4502 CCTCCCTCACGCAGGAGACTCAGTTGTCCTGAGAGAGATGAAGCAGCCTTGAAGCAGATGCTGCGTTTTCCATA 4575
Query 2179 -------------------------------------------------------------------------- 2178
Sbjct 4576 AACCTGATTTTGCCTCACATGAACCAAAGACTCTCAAAACTCCGCTTCTATAGAATTAGCTGAATAAAGGCATT 4649
Query 2179 --------- 2178
Sbjct 4650 TTACTGATA 4658
