Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06380
- Subject:
- XR_001754837.2
- Aligned Length:
- 2673
- Identities:
- 1768
- Gaps:
- 874
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CATGCTCATCACGCTGTGCTACCTGTACCTGTGGGCGCGCTGGGGTCGCCGGCCGGCTGAGCTCGTGCGCGCCA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGTGCGGCGGCTGCGTGCCTCGCGCTGTTCCTTCACCTTCTGCGGCGCGGCCGCGCAGCCCCCGGGCGCCCGC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTGTGCCTGAGCCGTGGCGGCCGCGTCTTCTGCGTCAGCGACAGCCAGTCCATTGAAGACTTGAACAAGTGGGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCTATTTCTTGTGTCTCCTTTTATACTTGAAGCAGAACACATAGCATTTGTGACGGAGAGCATTTGGGTACAAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGAGAATTTACAGAGATCATCCTCTTCAGAAACAATTGTCAAGTGGTCAGACTGTTGTTTGCCATTAGCTTGC 370
Query 1 ------------------------------------------------------------------------AT 2
||
Sbjct 371 AGACCTGGGGATCCTTATCGGCTAATTGCTGAAGCAAGTGTGGACAACTTCAGCAAGCTGGGGGTGGCGTTCAT 444
Query 3 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGAAGATAGACTCCACATGGATAATGGACTGGTACCCCAAAAGATTGTGTCGGTGCACTTGCAGGACTCCACTC 518
Query 77 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 150
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGAAGGAAGTTAAGGATCAGGTCTCAAACAAGCAAGCCCAGATCCTAGAGCCGAAGCCTGAACCTTCTCTTGAG 592
Query 151 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATTAAGCCTGAGCAGGACGGTATGGAGCATGTTGGCAGAGATGACCCAAAGGCTCTTGGTGAAGAACCCAAACA 666
Query 225 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGGAGAGGCAGTGCCTCTGGGAGTGAGCCTGCTGGGGACAGTGACAGGGGAGGGGGCCCCGTTGAGCATTATC 740
Query 299 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCTCCATCTGTCTAGTTGCCACGAGTGTCTGGAACTTGAGAACAGCACCATTGAGTCAGTCAAGTTTGCGTCT 814
Query 373 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GCCGAGAACATTCCAGACCTTCCCTACGATTATAGCAGCAGTTTGGAGAGTGTTGCTGATGAGACCTCCCCCGA 888
Query 447 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AAGAGAAGGGAGGAGAGTCAACCTCACGGGAAAGGCACCCAACATCCTCCTCTATGTGGGCTCCGACTCCCAGG 962
Query 521 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCCCTCGGCCGGTTCCACGAGGTCCGGTCTGTGCTGGCCGACTGTGTGGACATTGACAGTTATATTCTCTAC 1036
Query 595 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CACCTGCTGGAGGACAGTGCTCTCAGAGACCCGTGGACGGACAACTGTCTGCTGTTGGTCATTGCTACCAGGGA 1110
Query 669 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTCCATTCCCGAAGACCTGTACCAGAAGTTCATGGCCTATCTTTCTCAGGGAGGGAAGGTGTTGGGCCTGTCTT 1184
Query 743 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 816
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATCCTTCACCTTTGGTGGCTTTCAGGTGACAAGCAAGGGTGCACTGCACAAGACAGTCCAGAACTTGGTTTTC 1258
Query 817 TCCAAGGCTGACCAGAGTGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 890
|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCCAAGGCTGACCAGAGCGAGGTGAAGCTCAGCGTCTTGAGCAGTGGCTGCAGGTACCAGGAAGGCCCCGTCCG 1332
Query 891 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GCTCAGCCCCGGCAGGCTCCAGGGCCACCTGGAGAATGAGGACAAGGACAGGATGATTGTGCATGTGCCTTTTG 1406
Query 965 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GAACTCGCGGGGGAGAAGCTGTTCTTTGCCAGGTGCACTTAGAACTACCTCCCAGCTCCAACATAGTGCAAACT 1480
Query 1039 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CCAGAAGATTTTAACTTGCTCAAGTCAAGCAATTTTAGAAGATACGAAGTCCTTAGAGAGATTCTGACAACCCT 1554
Query 1113 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGGCCTCAGCTGTGACATGAAACAAGTTCCTGCCTTAACTCCTCTTTACTTGCTGTCAGCTGCGGAGGAAATCA 1628
Query 1187 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGGATCCTCTTATGCAGTGGCTTGGGAAACATGTGGACTCCGAGGGAGAAATAAAATCCGGCCAGCTCTCTCTT 1702
Query 1261 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGATTTGTTTCATCCTACGTGTCTGAAGTAGAAATAACCCCATCTTGTATACCTGTGGTGACCAACATGGAGGC 1776
Query 1335 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CTTCTCATCAGAACATTTCAACTTAGAGATCTATCGCCAAAATCTGCAGACCAAGCAGTTGGGGAAAGTAATTT 1850
Query 1409 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGTTTGCCGAAGTGACCCCCACAACGATGCGTCTCCTGGATGGGCTGATGTTTCAGACACCGCAGGAAATGGGC 1924
Query 1483 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAAAGGACGGGGAGGGAATGTGTGGCTGAGCCCTGTGGGATG 1556
|||||||||||||||||||||||||||||||||||
Sbjct 1925 TTAATAGTGATCGCGGCCCGGCAGACCGAGGGCAA--------------------------------------- 1959
Query 1557 TGCTCTTTCTACTCTGCTCATCTCCATTCCACTGAGATCCCAGCTGGGACAGAGGATCCCGTTTGTCCAGCATC 1630
Sbjct 1960 -------------------------------------------------------------------------- 1959
Query 1631 TGATGTCCGTGGCTGTCGTGGAAGCAGTGAGGTCCATTCCCGAGTATCAGGATATCAACTTACGAGTGAAGTGG 1704
||||||||||||||||||||||||||
Sbjct 1960 ------------------------------------------------AGGATATCAACTTACGAGTGAAGTGG 1985
Query 1705 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 1778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1986 CCCAACGATATTTATTACAGTGACCTCATGAAGATCGGCGGAGTTCTGGTTAACTCAACACTCATGGGAGAAAC 2059
Query 1779 ATTTTATATACTTATT----GGCTG---TGGATTTAATGTGACTAACAGTAACCCTACCATCTGCATCAACGAC 1845
|||||||||||||||| ||.|| |||.|||| ||.|.|||
Sbjct 2060 ATTTTATATACTTATTGTAAGGTTGAGATGGTTTTA---------------------------GCTTGAAC--- 2103
Query 1846 CTCATCACAGAATACAATAAACAACACAAGG-CAGAACTGAAGCCCTTAAGAGCCGATTATCTCATCGCCAGA- 1917
.||||| |||||| |.|||| ||.||..|||| ||.|.||||
Sbjct 2104 -------AAGAAT--AATAAA----AGAAGGACAAAAAGGAAG---------------------ATGGACAGAA 2143
Query 1918 ------GTCGTGACTGT-------GCTGGAGAAACTGA----TCAAAGAGTTTCAGGACA---AAGGGCCCAAC 1971
||| |||.| |.|.||||.|| || |.||| |.|||||| ||||
Sbjct 2144 ATACATGTC---ACTCTTCAAGTGGTTAGAGACAC-GAAATCTGAAA-----TGAGGACAAGGAAGG------- 2201
Query 1972 AGCGTCCTTCCCCTTTATTACCGATACTGGGTCCACAGTGGTCAG-CAAG------------TCCATCTGGGCA 2032
|| || |||.|.||| |||| |||||.| ||||
Sbjct 2202 AG--------------------GA------------AGTTGACAGTCAAGACTGTAACTTTTTCCATGT-GGCA 2242
Query 2033 GCGCAGAGGGACCAAAGGTGT----CCATC-----GTTGGCCTGGACGAT--TCTGGCTTCCTCCAGGTTCACC 2095
| ||||| ||.|||| ||||| |.||..|||..|.|| |.||..||
Sbjct 2243 G---AGAGG-----AATGTGTGATGCCATCAACAGGCTGAGCTGCTCAATTGTTTGTTTT-------------- 2294
Query 2096 AGGAGGGCGGCGAGGTTGTGACTGTGCACCCGGACGGCAACTCCTTCGACATGCTGAGAAACCTCATCCTCCCC 2169
Sbjct 2295 -------------------------------------------------------------------------- 2294
Query 2170 AAACGGCGG 2178
Sbjct 2295 --------- 2294
