Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06575
- Subject:
- XR_001751289.1
- Aligned Length:
- 1964
- Identities:
- 1034
- Gaps:
- 880
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAAATAGCCCCGGTGTGGGGATCCGTGCGCGGATGTCCCGGCGAGTCCCGGGCTGAAAGAGGCGGCTCCGGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGCGCGAAGCGCTGGTGGCGGGCCCGGGCTGCGGCGTGTGCGCGCCCGCCAGCTGCTCCGGAGATACGGAATTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CATTTTGTGAAAAAAGAACAAGAATTTTCTGCAAGGATCATATCTAAGTGCACTTTTTGCTGATACTTCATTTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAATCTTGTAGAAAATTTCAGCTGTAGCCCTTGGACTAGAAGCTGAAATAACAGAAGCTGTGTACGATGCATTA 296
Query 1 ----------------------------------------------------------------------ATGG 4
||||
Sbjct 297 GGGTATTGAAGAAAATTAACTTTTGAATTAAATATTTGGAATATAAGGAAATAAGGAAAGTTGACTGAAAATGG 370
Query 5 GGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGAGAAAGTTT 78
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGAGAAAGTTT 444
Query 79 GGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCATTTTCAACAGCTC 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCATTTTCAACAGCTC 518
Query 153 TAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCTCAAGTATACAGAATATAATGAACCTC 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCTCAAGTATACAGAATATAATGAACCTC 592
Query 227 ATGAAAGCAGAACCAACTCGGATATTGTTGAGGCTCTGAACAAGAAGGAACACAGAGGGTGCGACAGCCCAGAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGAAAGCAGAACCAACTCGGATATTGTTGAGGCTCTGAACAAGAAGGAACACAGAGGGTGCGACAGCCCAGAC 666
Query 301 CCTGATACTTCATATGTGCTAACTCCACATACAGAAGAAAAATATAAAAAAATTAATGAGGAATTTGATAATAT 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCTGATACTTCATATGTGCTAACTCCACATACAGAAGAAAAATATAAAAAAATTAATGAGGAATTTGATAATAT 740
Query 375 GATGCGGAATCATAAAATCGC------------ACCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGTCACAG 436
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GATGCGGAATCATAAAATCGCAGTGAGTACTAAACCTGGTCTGCCACCTCAGAACTTTTCAATGTCTGTCACAG 814
Query 437 TTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGGCAGCC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCCCATCTTTGGCAGCC 888
Query 511 AGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGC 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAGAAATGTGTCTCCTGGAGC 962
Query 585 TCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACAGACCTCACAGTGCCAAATGGAG 1036
Query 659 CTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTCCAAATTTGATTGGAGCTACTGGTGCA 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTCCAAATTTGATTGGAGCTACTGGTGCA 1110
Query 733 AATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACCAGGTGGTGGTAATCTTGGAATGAACAGTAG 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACCAGGTGGTGGTAATCTTGGAATGAACAGTAG 1184
Query 807 GAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAGGGCATGATGCCTCCACTAAATACCCAA---AGGA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|| |||| ||||
Sbjct 1185 GAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAGGGCATGATGCCTCCACTAGAT--CCAATCCAGGA 1256
Query 878 T----CAGTAGTTCTCAAGCCACTCA-ACCTCTTGCTACCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTC 946
| ||.|| |.|..|| ||.||| ..||||| ||.||...||.||.|||||| .||.||
Sbjct 1257 TACCACATTA--TATTTAG-CAATCATGTCTCTT--TAGCCTCCTCTTGACTGTGA-------GAGTTT----- 1313
Query 947 CGCAAGGACTTGTGTACTCAGCAATGCCGACTGCCTACAACACTGATTATTCACTGACCAGCGCTGAC------ 1014
|.|.||||| |.|| ||| ||.|.||||| .||||
Sbjct 1314 --CTAAGACTT---TCCT------TGC----------------------TTTAATGACC----TTGACAGTTTT 1350
Query 1015 --------CT-GTCAGCCCT----TCAAGGC--TTCAACTCGCCAGGAA------------------------- 1048
|| |||||.||| || |||| || ||| |.|||||
Sbjct 1351 GAGGAGTACTAGTCAGTCCTAGAATC-AGGCATTT---CTC-CAAGGAACATTATTTTTATGGAGAATGAAAGA 1419
Query 1049 --------------TGCTGTC-------------GCTGGGACAGGTGTCGGCCT------GGCAGCAGCACCAC 1089
||||.|| |||...|.||||.||.|.|| ||||..|..|..|.
Sbjct 1420 AACCAAGATCCGAGTGCTTTCCCTCTTTTTAATTGCTCCAAAAGGTATCTGACTATGTAAGGCAAAAATAGTAA 1493
Query 1090 CTAGGACAAGCAGCCCTCAGCTCTCTTGTTGCTGGAGGGCAGTTATCTCAGGGTTCCAATTTATCCAT-TAATA 1162
|| .|.|.|||||.|||.| ||| ||| |||
Sbjct 1494 CT------------------GTATTTTGTTTCTGTA--GCA------------------------CATGTAA-- 1521
Query 1163 CCAACCAAAACATCAG-CATCAAGTCCGAACCGATTTCACCTCCTCGGGATCGTATGACCCCATCGGGCTTCCA 1235
||..||||.||..| ||.||| || ||| ||||
Sbjct 1522 --AAATAAAATATATGACAACAA-----AA--GAT-----------GGGA------------------------ 1551
Query 1236 GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCAGCCCC 1309
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1310 AGCCCCGACAGGAAATGGGGCGCTCCCCTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCAGTGAT 1383
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1384 CGGGAGGATCCACGGGGCGACTTCCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGAGAAAG 1457
Sbjct 1552 -------------------------------------------------------------------------- 1551
Query 1458 CCCTTCTGTAAAGCGAATGAGGATGGACGCGTGGGTTACC 1497
Sbjct 1552 ---------------------------------------- 1551
