Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06605
Subject:
NM_001320987.3
Aligned Length:
2892
Identities:
2787
Gaps:
102

Alignment

Query    1  ATGGATGAACAGAGCGTGGAGAGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAGAAATTGCGGGATGC  74
            ||||||||||||||||||||                                                      
Sbjct    1  ATGGATGAACAGAGCGTGGA------------------------------------------------------  20

Query   75  ACGCCTGTGTCCTCATTGCTCCAAACTGTGTTGTTTCAGCTGTATTAGGCGCTGGCTGACAGAGCAGAGAGCTC  148
                                                            ||||||||||||||||||||||||||
Sbjct   21  ------------------------------------------------GCGCTGGCTGACAGAGCAGAGAGCTC  46

Query  149  AATGTCCTCATTGCCGTGCTCCACTCCAGCTACGAGAACTAGTAAATTGTCGTTGGGCAGAAGAAGTAACACAA  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   47  AATGTCCTCATTGCCGTGCTCCACTCCAGCTACGAGAACTAGTAAATTGTCGTTGGGCAGAAGAAGTAACACAA  120

Query  223  CAGCTTGATACTCTTCAACTCTGCAGTCTCACCAAACATGAAGAAAATGAAAAGGACAAATGTGAAAATCACCA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CAGCTTGATACTCTTCAACTCTGCAGTCTCACCAAACATGAAGAAAATGAAAAGGACAAATGTGAAAATCACCA  194

Query  297  TGAAAAACTTAGTGTATTTTGCTGGGCTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATGC  370
            |||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  195  TGAAAAACTTAGTGTATTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTGTGCACTTTGGGGAGGAATGC  268

Query  371  ATGGCGGACATACCTTTAAACCTTTGGCAGAAATTTATGAGCAACACGTCACTAAAGTGAATGAAGAGGTAGCC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  ATGGCGGACATACCTTTAAACCTTTGGCAGAAATTTATGAGCAACACGTCACTAAAGTGAATGAAGAGGTAGCC  342

Query  445  AAACTTCGTCGGCGTCTCATGGAACTGATCAGCTTAGTTCAAGAAGTGGAAAGGAATGTAGAAGCTGTAAGAAA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  343  AAACTTCGTCGGCGTCTCATGGAACTGATCAGCTTAGTTCAAGAAGTGGAAAGGAATGTAGAAGCTGTAAGAAA  416

Query  519  TGCAAAAGATGAGCGTGTTCGGGAAATTAGGAATGCAGTGGAGATGATGATTGCACGGTTAGACACACAGCTGA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  TGCAAAAGATGAGCGTGTTCGGGAAATTAGGAATGCAGTGGAGATGATGATTGCACGGTTAGACACACAGCTGA  490

Query  593  AGAATAAGCTTATAACACTGATGGGTCAGAAGACATCTCTAACCCAAGAAACAGAGCTTTTGGAATCCTTACTT  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  491  AGAATAAGCTTATAACACTGATGGGTCAGAAGACATCTCTAACCCAAGAAACAGAGCTTTTGGAATCCTTACTT  564

Query  667  CAGGAGGTGGAGCACCAGTTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAGAGCTCAGAGATCCTTATGAT  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  565  CAGGAGGTGGAGCACCAGTTGCGGTCTTGTAGTAAGAGTGAGTTGATATCTAAGAGCTCAGAGATCCTTATGAT  638

Query  741  GTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTTACCACTCCTGTTCCACCAGACTTTACCAGTGAAT  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  639  GTTTCAGCAAGTTCATCGGAAGCCCATGGCATCTTTTGTTACCACTCCTGTTCCACCAGACTTTACCAGTGAAT  712

Query  815  TAGTGCCATCTTACGATTCAGCTACTTTTGTTTTAGAGAATTTCAGCACTTTGCGTCAGAGAGCAGATCCTGTT  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  713  TAGTGCCATCTTACGATTCAGCTACTTTTGTTTTAGAGAATTTCAGCACTTTGCGTCAGAGAGCAGATCCTGTT  786

Query  889  TACAGTCCACCTCTTCAAGTTTCAGGACTTTGCTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTGCG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  787  TACAGTCCACCTCTTCAAGTTTCAGGACTTTGCTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTGCG  860

Query  963  AGGTTACTACTTATCTGTGTTTCTGGAGCTCTCAGCTGGCTTGCCTGAAACTTCTAAATATGAATATCGTGTAG  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  861  AGGTTACTACTTATCTGTGTTTCTGGAGCTCTCAGCTGGCTTGCCTGAAACTTCTAAATATGAATATCGTGTAG  934

Query 1037  AGATGGTTCACCAGTCCTGTAATGATCCTACAAAAAATATCATTCGAGAATTTGCATCTGACTTTGAAGTTGGA  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  935  AGATGGTTCACCAGTCCTGTAATGATCCTACAAAAAATATCATTCGAGAATTTGCATCTGACTTTGAAGTTGGA  1008

Query 1111  GAATGCTGGGGCTATAATAGATTTTTCCGTTTGGACTTACTCGCAAATGAAGGATACTTGAATCCACAAAATGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009  GAATGCTGGGGCTATAATAGATTTTTCCGTTTGGACTTACTCGCAAATGAAGGATACTTGAATCCACAAAATGA  1082

Query 1185  TACAGTGATTTTAAGGTTTCAGGTACGTTCACCAACTTTCTTTCAAAAATCCCGGGACCAGCATTGGTACATTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083  TACAGTGATTTTAAGGTTTCAGGTACGTTCACCAACTTTCTTTCAAAAATCCCGGGACCAGCATTGGTACATTA  1156

Query 1259  CTCAGCTGGAAGCTGCACAGACTAGTTATATCCAACAAATAAACAACCTTAAAGAGAGACTTACTATTGAGCTG  1332
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157  CTCAGTTGGAAGCTGCACAGACTAGTTATATCCAACAAATAAACAACCTTAAAGAGAGACTTACTATTGAGCTG  1230

Query 1333  TCTCGAACTCAGAAGTCAAGAGATTTGTCACCACCAGATAACCATCTTAGCCCCCAAAATGATGATGCTCTGGA  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231  TCTCGAACTCAGAAGTCAAGAGATTTGTCACCACCAGATAACCATCTTAGCCCCCAAAATGATGATGCTCTGGA  1304

Query 1407  GACACGAGCTAAGAAGTCTGCATGCTCTGACATGCTTCTCGAAGGTGGTCCTACTACAGCTTCTGTAAGAGAGG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1305  GACACGAGCTAAGAAGTCTGCATGCTCTGACATGCTTCTCGAAGGTGGTCCTACTACAGCTTCTGTAAGAGAGG  1378

Query 1481  CCAAAGAGGATGAAGAAGATGAGGAGAAGATTCAGAATGAAGATTATCATCACGAGCTTTCAGATGGAGATCTG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379  CCAAAGAGGATGAAGAAGATGAGGAGAAGATTCAGAATGAAGATTATCATCACGAGCTTTCAGATGGAGATCTG  1452

Query 1555  GATCTGGATCTTGTTTATGAGGATGAAGTAAATCAGCTCGATGGCAGCAGTTCCTCTGCTAGTTCCACAGCAAC  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453  GATCTGGATCTTGTTTATGAGGATGAAGTAAATCAGCTCGATGGCAGCAGTTCCTCTGCTAGTTCCACAGCAAC  1526

Query 1629  AAGTAATACAGAAGAAAATGATATTGATGAAGAAACTATGTCTGGAGAAAATGATGTGGAATATAACAACATGG  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1527  AAGTAATACAGAAGAAAATGATATTGATGAAGAAACTATGTCTGGAGAAAATGATGTGGAATATAACAACATGG  1600

Query 1703  AATTAGAAGAGGGAGAACTCATGGAAGATGCAGCTGCTGCAGGACCCGCAGGTAGTAGCCATGGTTATGTGGGT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1601  AATTAGAAGAGGGAGAACTCATGGAAGATGCAGCTGCTGCAGGACCCGCAGGTAGTAGCCATGGTTATGTGGGT  1674

Query 1777  TCCAGTAGTAGAATATCAAGAAGAACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATT  1850
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1675  TCCAGTAGTAGAATATCAAGAAGAACACATTTATGCTCCGCTGCTACCAGTAGTTTACTAGACATTGATCCATT  1748

Query 1851  AATTTTAATACATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGCCCAC  1924
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1749  AATTTTAATACATTTGTTGGACCTTAAGGACCGGAGCAGTATAGAAAATTTGTGGGGCTTACAGCCTCGCCCAC  1822

Query 1925  CTGCTTCACTTCTGCAGCCCACAGCATCATATTCTCGAAAAGATAAAGACCAAAGGAAGCAACAGGCAATGTGG  1998
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823  CTGCTTCACTTCTGCAGCCCACAGCATCATATTCTCGAAAAGATAAAGACCAAAGGAAGCAACAGGCAATGTGG  1896

Query 1999  CGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACTCAAATGGCCGAAGTTCGATGTATGAAAACTGA  2072
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897  CGAGTGCCCTCTGATTTAAAGATGCTAAAAAGACTCAAAACTCAAATGGCCGAAGTTCGATGTATGAAAACTGA  1970

Query 2073  TGTAAAGAATACACTTTCAGAAATAAAAAGCAGCAGTGCTGCTTCTGGAGACATGCAGACAAGCCTTTTTTCTG  2146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971  TGTAAAGAATACACTTTCAGAAATAAAAAGCAGCAGTGCTGCTTCTGGAGACATGCAGACAAGCCTTTTTTCTG  2044

Query 2147  CTGACCAGGCAGCTCTGGCTGCATGTGGAACTGAAAACTCTGGCAGATTGCAGGATTTGGGAATGGAACTCCTG  2220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2045  CTGACCAGGCAGCTCTGGCTGCATGTGGAACTGAAAACTCTGGCAGATTGCAGGATTTGGGAATGGAACTCCTG  2118

Query 2221  GCAAAGTCATCAGTTGCCAATTGTTACATACGAAACTCCACAAATAAGAAGAGTAATTCGCCCAAGCCAGCTCG  2294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2119  GCAAAGTCATCAGTTGCCAATTGTTACATACGAAACTCCACAAATAAGAAGAGTAATTCGCCCAAGCCAGCTCG  2192

Query 2295  ATCCAGTGTAGCAGGTAGTCTATCACTTCGAAGAGCAGTGGACCCTGGAGAAAATAGTCGTTCAAAGGGAGACT  2368
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193  ATCCAGTGTAGCAGGTAGTCTATCACTTCGAAGAGCAGTGGACCCTGGAGAAAATAGTCGTTCAAAGGGAGACT  2266

Query 2369  GTCAGACTCTGTCTGAAGGCTCCCCAGGAAGCTCTCAGTCTGGGAGCAGGCACAGTTCTCCCCGAGCCTTGATA  2442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2267  GTCAGACTCTGTCTGAAGGCTCCCCAGGAAGCTCTCAGTCTGGGAGCAGGCACAGTTCTCCCCGAGCCTTGATA  2340

Query 2443  CATGGCAGTATCGGTGATATTCTGCCAAAAACTGAAGACCGGCAGTGTAAAGCTTTGGATTCAGATGCTGTTGT  2516
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2341  CATGGCAGTATCGGTGATATTCTGCCAAAAACTGAAGACCGGCAGTGTAAAGCTTTGGATTCAGATGCTGTTGT  2414

Query 2517  GGTTGCAGTTTTCAGTGGCTTGCCTGCGGTTGAGAAAAGGAGGAAAATGGTCACCTTGGGGGCTAATGCTAAAG  2590
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2415  GGTTGCAGTTTTCAGTGGCTTGCCTGCGGTTGAGAAAAGGAGGAAAATGGTCACCTTGGGGGCTAATGCTAAAG  2488

Query 2591  GAGGTCATCTGGAAGGACTGCAGATGACTGATTTGGAAAATAATTCTGAAACTGGAGAGTTACAGCCTGTACTA  2664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2489  GAGGTCATCTGGAAGGACTGCAGATGACTGATTTGGAAAATAATTCTGAAACTGGAGAGTTACAGCCTGTACTA  2562

Query 2665  CCTGAAGGAGCTTCAGCTGCCCCTGAAGAAGGAATGAGTAGCGACAGTGACATTGAATGTGACACTGAGAATGA  2738
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2563  CCTGAAGGAGCTTCAGCTGCCCCTGAAGAAGGAATGAGTAGCGACAGTGACATTGAATGTGACACTGAGAATGA  2636

Query 2739  GGAGCAGGAAGAGCATACCAGTGTGGGCGGGTTTCACGACTCCTTCATGGTCATGACACAGCCCCCGGATGAAG  2812
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637  GGAGCAGGAAGAGCATACCAGTGTGGGCGGGTTTCACGACTCCTTCATGGTCATGACACAGCCCCCGGATGAAG  2710

Query 2813  ATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAAAATAGT  2886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2711  ATACACATTCCAGTTTTCCTGATGGTGAACAAATAGGCCCTGAAGATCTCAGCTTCAATACAGATGAAAATAGT  2784

Query 2887  GGAAGA  2892
            |||||.
Sbjct 2785  GGAAGG  2790

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