Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06606
- Subject:
- NM_001165996.1
- Aligned Length:
- 2615
- Identities:
- 1002
- Gaps:
- 1489
Alignment
Query 1 ATGAGAGAGCTCGTCAACATTCCACTGGTACATATTCTTACTCTGGTTGCCTTCAGCGGAACTGAGAAACTTCC 74
|||||||||||.|||||||||||||||.||||.||.||.||.|||||||||||||||||.||||||||||||||
Sbjct 1 ATGAGAGAGCTTGTCAACATTCCACTGTTACAGATGCTCACCCTGGTTGCCTTCAGCGGGACTGAGAAACTTCC 74
Query 75 AAAAGCTCCTGTCATCACCACTCCTCTTGAAACAGTGGATGCCTTAGTTGAAGAAGTGGCTACTTTCATGTGTG 148
||||||.||||||||||||||.|||||||||||.||.||||||||.|||||||||||.||.|||||||||||||
Sbjct 75 AAAAGCCCCTGTCATCACCACGCCTCTTGAAACTGTAGATGCCTTGGTTGAAGAAGTAGCGACTTTCATGTGTG 148
Query 149 CAGTGGAATCCTACCCCCAGCCTGAGATTTCCTGGACTAGAAATAAAATTCTCATTAAACTCTTTGACACCCGG 222
|.||||||||||||||.|||||.||||||||.|||||.||||||||||||||||||||.||.|||||||||||.
Sbjct 149 CCGTGGAATCCTACCCTCAGCCCGAGATTTCTTGGACCAGAAATAAAATTCTCATTAAGCTGTTTGACACCCGC 222
Query 223 TACAGCATCCGGGAGAATGGGCAGCTCCTCACCATCCTGAGTGTGGAAGACAGTGATGATGGCATTTACTGCTG 296
||||||||||||||||||||.||||||||||||||.|||||.|||||||||||||||||||||||.||||||||
Sbjct 223 TACAGCATCCGGGAGAATGGTCAGCTCCTCACCATTCTGAGCGTGGAAGACAGTGATGATGGCATCTACTGCTG 296
Query 297 CACGGCCAACAATGGTGTGGGAGGAGCTGTGGAGAGTTGTGGAGCCCTGCAAGTGAAGATGAAACCTAAAATAA 370
||..|||||||||||.|||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 297 CATAGCCAACAATGGAGTGGGAGGAGCCGTGGAGAGTTGTGGTGCCCTGCAAGTGAAGATGAAACCTAAAATAA 370
Query 371 CTCGTCCTCCCATAAATGTGAAAATAATAGAAGGATTAAAAGCAGTCCTACCATGTACTACAATGGGTAATCCC 444
|||||||||||||.|||||.|||||||||||.|||||.||.|||||.||.||.||.|||||.||||||||.|||
Sbjct 371 CTCGTCCTCCCATTAATGTAAAAATAATAGAGGGATTGAAGGCAGTTCTGCCGTGCACTACGATGGGTAACCCC 444
Query 445 AAACCATCAGTGTCTTGGATAAAGGGAGACAGCCCTCTCAGGGAAAATTCCCGAATTGCAGTTCTTGAATCTGG 518
||||||||.|||||.|||||.|||||.||||...|||||||||||||||||.||||.|||||||||||||||||
Sbjct 445 AAACCATCTGTGTCCTGGATCAAGGGGGACAATGCTCTCAGGGAAAATTCCAGAATCGCAGTTCTTGAATCTGG 518
Query 519 GAGCTTGAGGATTCATAACGTACAAAAGGAAGATGCAGGACAGTATCGATGTGTGGCAAAAAACAGCCTCGGGA 592
||||||.|||||.|||||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||.|
Sbjct 519 GAGCTTAAGGATCCATAATGTGCAAAAGGAAGATGCAGGACAGTACCGCTGTGTGGCCAAAAACAGCCTGGGCA 592
Query 593 CAGCATATTCCAAAGTGGTGAAGCTGGAAGTTGAGGAAGAAAGTGAACCCGAACAAGATACTAAAGTTTTTGCC 666
||||.||.||||||.||||||||||||||||.||| ||||||||.
Sbjct 593 CAGCTTACTCCAAACTGGTGAAGCTGGAAGTGGAG------------------------------GTTTTTGCA 636
Query 667 AGGATCCTGCGGGCTCCTGAATCCCACAATGTCACCTTTGGCTCCTTTGTGACCCTGCACTGTACAGCAACAGG 740
||.||||||||.|||||||||||||||||||||||||||||.||||||||.|||||.|.|||.|||||||.|||
Sbjct 637 AGAATCCTGCGTGCTCCTGAATCCCACAATGTCACCTTTGGTTCCTTTGTAACCCTACGCTGCACAGCAATAGG 710
Query 741 CATTCCTGTCCCCACCATCACCTGGATTGAAAACGGAAATGCTGTTTCTTCTGGGTCCATTCAAGAGAGTGTGA 814
|||.||||||||||||||||.||||||||||||||||||||||||||||||.||.|||||||||||||||||||
Sbjct 711 CATCCCTGTCCCCACCATCAGCTGGATTGAAAACGGAAATGCTGTTTCTTCAGGTTCCATTCAAGAGAGTGTGA 784
Query 815 AAGACCGAGTGATTGACTCAAGACTGCAGCTGTTTATCACCAAGCCAGGACTCTACACATGCATAGCTACCAAT 888
|||||||||||||||||||||||||.|||||.||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 785 AAGACCGAGTGATTGACTCAAGACTCCAGCTCTTCATCACAAAGCCAGGACTCTACACATGCATAGCTACCAAT 858
Query 889 AAGCATGGGGAGAAGTTCAGTACTGCCAAGGCTGCAGCCACCATCAGCATAGCAGAATGG-------------- 948
|||||.||.||.|||||||||||.||.||||||||||||||..|||||||||||||||||
Sbjct 859 AAGCACGGAGAAAAGTTCAGTACCGCAAAGGCTGCAGCCACTGTCAGCATAGCAGAATGGAGTAAGTCACAGAA 932
Query 949 -------------------------------------------------------------------------- 948
Sbjct 933 AGACAGCCAAGGCTACTGTGCCCAGTACAGAGGGGAGGTGTGTGATGCAGTCCTGGCGAAAGATGCTCTTGTCT 1006
Query 949 -------------------------------------------------------------------------- 948
Sbjct 1007 TCTTCAACACCTCCTACCGGGACCCCGAGGACGCCCAGGAGCTGCTGATCCACACTGCGTGGAATGAGCTGAAG 1080
Query 949 -------------------------------------------------------------------------- 948
Sbjct 1081 GCTGTGAGTCCACTGTGCCGGCCAGCTGCTGAGGCTCTGCTGTGTAACCACCTCTTCCAAGAGTGCAGCCCTGG 1154
Query 949 ----------------------------AGAGAGTACTGCTTGGCAGTAAAGGAGCTCTTCTGCGCAAAAGAAT 994
||||||||||||.||||.|||||||||||||||||.|||||.||||
Sbjct 1155 AGTGGTACCTACTCCCATGCCCATTTGCAGAGAGTACTGCCTGGCGGTAAAGGAGCTCTTCTGTGCAAAGGAAT 1228
Query 995 GGCTGGTAATGGAAGAGAAGACCCACAGAGGACTCTACAGATCCGAGATGCATTTGCTGTCC-GTGCCAGAATG 1067
|||.||.||||||||..|||.|||||.|.||.|||||||||||.|.|||||||.|.|| ||| ||.|||||.||
Sbjct 1229 GGCAGGCAATGGAAGGAAAGGCCCACCGGGGCCTCTACAGATCTGGGATGCATCTCCT-TCCGGTACCAGAGTG 1301
Query 1068 CAGCAAGCTTCCCAGCATGCATTGGGACCCCACGGCCTGTGCCAGACTGCCACATCTAGCATTCCCACCAATGA 1141
|||||||||||||||||||||..||||||||||.|||||..|.|||||||||.||.||| ..|.|||.||
Sbjct 1302 CAGCAAGCTTCCCAGCATGCACCGGGACCCCACAGCCTGCACAAGACTGCCATATTTAG-----GTAACAAAGA 1370
Query 1142 CG-TCCTCAAAGCCAAGTGTGGACATTCCAAATCTGCCTTCCTCCTCCTCTTCTTCCTTCTCTGTCTCACCTAC 1214
.| |||||.| |||.||..||.|
Sbjct 1371 AGTTCCTCCA-----------GACTTTGGAAGT----------------------------------------- 1392
Query 1215 ATACTCCATGACTGTAATAATCTCCATCATGTCCAGCTTTGCAATATTTGTGCTTCTTACCATAACTACTCTCT 1288
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1289 ATTGCTGCCGAAGAAGAAAACAATGGAAAAATAAGAAAAGAGAATCAGCAGCAGTAACCCTCACCACACTGCCT 1362
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1363 TCTGAGCTCTTACTAGATAGACTTCATCCCAACCCCATGTACCAGAGGATGCCGCTCCTTCTGAACCCCAAATT 1436
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1437 GCTCAGCCTGGAGTATCCAAGGAATAACATTGAATATGTGAGAGACATCGGAGAGGGAGCGTTTGGAAGGGTGT 1510
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1511 TTCAAGCAAGGGCACCAGGCTTACTTCCCTATGAACCTTTCACTATGGTGGCAGTAAAGATGCTCAAAGAAGAA 1584
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1585 GCCTCGGCAGATATGCAAGCGGACTTTCAGAGGGAGGCAGCCCTCATGGCAGAATTTGACAACCCTAACATTGT 1658
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1659 GAAGCTATTAGGAGTGTGTGCTGTCGGGAAGCCAATGTGCCTGCTCTTTGAATACATGGCCTATGGTGACCTCA 1732
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1733 ATGAGTTCCTCCGCAGCATGTCCCCTCACACCGTGTGCAGCCTCAGTCACAGTGACTTGTCTATGAGGGCTCAG 1806
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1807 GTCTCCAGCCCTGGGCCCCCACCCCTCTCCTGTGCTGAGCAGCTTTGCATTGCCAGGCAGGTGGCAGCTGGCAT 1880
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1881 GGCTTACCTCTCAGAACGTAAGTTTGTTCACCGAGATTTAGCCACCAGGAACTGCCTGGTGGGCGAGAACATGG 1954
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1955 TGGTGAAAATTGCCGACTTTGGCCTCTCCAGGAACATCTACTCAGCAGACTACTACAAAGCTAATGAAAACGAC 2028
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2029 GCTATCCCTATCCGTTGGATGCCACCAGAGTCCATTTTTTATAACCGCTACACTACAGAGTCTGATGTGTGGGC 2102
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2103 CTATGGCGTGGTCCTCTGGGAGATCTTCTCCTATGGCCTGCAGCCCTACTATGGGATGGCCCATGAGGAGGTCA 2176
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2177 TTTACTACGTGCGAGATGGCAACATCCTCTCCTGCCCTGAGAACTGCCCCGTGGAGCTGTACAATCTCATGCGT 2250
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2251 CTATGTTGGAGCAAGCTGCCTGCAGACAGACCCAGTTTCACCAGTATTCACCGAATTCTGGAACGCATGTGTGA 2324
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2325 GAGGGCAGAGGGAACTGTGAGTGTC 2349
Sbjct 1393 ------------------------- 1392
