Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_06649
Subject:
XM_011241407.1
Aligned Length:
2147
Identities:
1596
Gaps:
439

Alignment

Query    1  ATGTCTCGCAGTCCTGATGCGAAGGAAGACCCTGTGGAGTGCCCTCTTTGCATGGAGCCCTTGGAGATAGATGA  74
            ||||||||||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||.||||||||
Sbjct    1  ATGTCTCGCAGTCCTGATGCAAAGGAAGACCCTGTGGAATGCCCTCTTTGCATGGAGCCCTTGGAAATAGATGA  74

Query   75  TATCAACTTTTTCCCTTGCACCTGTGGCTACCAGATTTGCCGATTTTGTTGGCATCGAATTCGCACTGATGAAA  148
            |||.||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||.|
Sbjct   75  TATTAACTTTTTCCCTTGCACCTGTGGCTACCAGATATGCCGATTTTGTTGGCATCGAATTCGCACTGATGAGA  148

Query  149  ATGGGCTTTGTCCTGCATGTAGAAAGCCATATCCAGAAGACCCAGCAGTTTATAAACCACTCTCCCAGGAAGAG  222
            |||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||||||.|||||||||||.
Sbjct  149  ATGGGCTTTGTCCTGCATGTAGAAAACCATATCCAGAAGATCCAGCAGTTTACAAACCACTTTCCCAGGAAGAA  222

Query  223  CTGCAAAGGATAAAGAATGAGAAAAAACAGAAACAAAATGAGAGAAAACAGAAAATATCAGAAAATCGCAAACA  296
            .|.||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||.|.|||||
Sbjct  223  TTACAAAGGATAAAGAATGAGAAAAAACAGAAACAAAATGAAAGAAAACAGAAAATCTCAGAAAATAGAAAACA  296

Query  297  TTTGGCTAGTGTACGTGTCGTACAAAAAAACCTCGTCTTTGTTGTAGGTTTATCTCAGCGCCTAGCAGACCCAG  370
            ||||||||||||||||||.||||||||||||||.||.||||||||||||.|.||.|||||||||||||||||||
Sbjct  297  TTTGGCTAGTGTACGTGTTGTACAAAAAAACCTTGTGTTTGTTGTAGGTCTGTCACAGCGCCTAGCAGACCCAG  370

Query  371  AGGTTTTAAAACGACCAGAATATTTTGGGAAGTTTGGTAAAATACATAAAGTTGTCATCAATAATAGCACATCA  444
            |.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  371  AAGTTTTAAAACGACCAGAGTATTTTGGGAAGTTTGGTAAAATACATAAAGTTGTCATCAATAATAGCACATCC  444

Query  445  TATGCAGGCTCACAGGGTCCAAGTGCCAGTGCTTATGTAACCTATATCCGGTCAGAAGACGCTCTCAGAGCCAT  518
            ||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||||.|||||||||||.||
Sbjct  445  TATGCAGGCTCACAGGGTCCGAGTGCCAGTGCTTATGTAACGTATATCCGGTCAGAAGATGCTCTCAGAGCAAT  518

Query  519  ACAGTGTGTCAACAATGTGGTAGTAGATGGCAGAACACTTAAGGCATCTCTAGGTACAACAAAATACTGCAGTT  592
            |||||||||||||||||||||||||||||||||.|||||.|||||||||.|||||||||||||.||||||||||
Sbjct  519  ACAGTGTGTCAACAATGTGGTAGTAGATGGCAGGACACTAAAGGCATCTTTAGGTACAACAAAGTACTGCAGTT  592

Query  593  ACTTCTTAAAGAATATGCAGTGTCCAAAACCTGACTGCATGTATCTTCATGAATTGGGGGATGAGGCGGCCAGC  666
            |.|||||||||||.||||||||.|||||.|||||||||||||||||||||||||||||.||||||||.||||||
Sbjct  593  ATTTCTTAAAGAACATGCAGTGCCCAAAGCCTGACTGCATGTATCTTCATGAATTGGGAGATGAGGCAGCCAGC  666

Query  667  TTCACAAAAGAGGAAATGCAGGCGGGTAAACACCAAGAATATGAACAGAAGCTACTTCAAGAATTATATAAATT  740
            |||||||||||||||||||||||||||||.|||||||||||||||||||||||.||.|||||||||||||||||
Sbjct  667  TTCACAAAAGAGGAAATGCAGGCGGGTAAGCACCAAGAATATGAACAGAAGCTCCTCCAAGAATTATATAAATT  740

Query  741  AAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGATAAAAATAAGAACAAAGTGACACCACTGCAGAG--  812
            ||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||.|.||.||  
Sbjct  741  AAATCCCAATTTTCTTCAGCTATCTACGGGTTCAGTTGATAAGAATAAGAACAAAGTGACACCATTACAAAGGT  814

Query  813  -------CCCCATTGACAAACCTTCAGATTCTCTCAGTATAGGGAACGGTGATAATTCCCAGCAGATATCTAAC  879
                   |||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||
Sbjct  815  ATGATACCCCCATTGACAAACCTTCAGATTCTCTCAGTATAGGGAATGGTGATAATTCCCAACAGATATCTAAC  888

Query  880  AGTGATACGCCTTCACCACCACCTGGTTTGTCAAAATCCAATCCAGTCATCCCCATCAGTTCATCCAATCACAG  953
            |||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||||||||||||||
Sbjct  889  AGTGATACGCCTTCACCACCACCTGGTTTATCAAAATCCAACCCTGTCATCCCCATCAGTTCATCCAATCACAG  962

Query  954  TGCACGGTCCCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCGTTATTCTCAGACATTTTTCGCCATCCCAACC  1027
            |||..||||.||||||||||||||||||||||||||||||||.|||||||||||||.|||||||||.|||||||
Sbjct  963  TGCGAGGTCTCCTTTTGAAGGGGCAGTAACAGAGTCACAGTCATTATTCTCAGACAATTTTCGCCACCCCAACC  1036

Query 1028  CTATCCCAAGTGGGCTTCCTCCTTTCCCCAGCTCCCCACAGACATCCAGTGACTGGCCTACAGCACCAGAACCA  1101
            ||||.||||||||||||||||||||.||||||||.|||||||||.|||||||.|||||||||||.|||||||||
Sbjct 1037  CTATACCAAGTGGGCTTCCTCCTTTTCCCAGCTCTCCACAGACACCCAGTGATTGGCCTACAGCTCCAGAACCA  1110

Query 1102  CAGAGCCTCTTCACATCAGAAACAATCCCAGTATCATCCTCTACAGACTGGCAAGCAGCTTTTGGCTTTGGTTC  1175
            ||||||||||||||||||||||||||||||||.|||||.||||||||||||||||||||.||.|||||||||||
Sbjct 1111  CAGAGCCTCTTCACATCAGAAACAATCCCAGTTTCATCATCTACAGACTGGCAAGCAGCATTCGGCTTTGGTTC  1184

Query 1176  TTCTAAACAACCAGAGGATGACTTGGGTTTTGATCCCTTCGATGTCACTCGAAAAGCCTTAGCAGACCTGATTG  1249
            |||||||||||||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||
Sbjct 1185  TTCTAAACAACCAGAGGATGACTTGGGGTTTGACCCCTTTGATGTCACTCGAAAAGCCTTAGCAGACCTGATTG  1258

Query 1250  AGAAGGAACTGTCCGTTCAAGACCAACCTTCCCTTTCGCCCACATCTCTTCAGAACTCCTCTTCACACACTACA  1323
            ||||||||||.|||||.|||||.||||||||||||||.||||||||||||||||||.||||.|||||||||||.
Sbjct 1259  AGAAGGAACTATCCGTCCAAGATCAACCTTCCCTTTCCCCCACATCTCTTCAGAACGCCTCCTCACACACTACG  1332

Query 1324  ACCGCCAAAGGTCCAGGCTCTGGATTCCTGCATCCTGCTGCAGCTACAAATGCCAATTCTCTCAATAGTACCTT  1397
            |||||||||||.||||||||||||||||||||..||||||||.|||||||||||||.|||||||||||||||||
Sbjct 1333  ACCGCCAAAGGGCCAGGCTCTGGATTCCTGCACTCTGCTGCACCTACAAATGCCAACTCTCTCAATAGTACCTT  1406

Query 1398  TTCAGTCTTGCCCCAGAGGTTCCCTCAATTTCAGCAGCACCGAGCGGTTTATAATTCATTCAGTTTTCCAGGCC  1471
            ||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||.|||.||||||||||||
Sbjct 1407  TTCAGTCTTGCCACAGAGGTTCCCTCAATTTCAGCAGCACCGAGCAGTTTATAATTCGTTCGGTTTTCCAGGCC  1480

Query 1472  AGGCAGCCCGCTATCCTTGGATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACC  1545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGGCAGCCCGCTATCCTTGGATGGCCTTTCCACGCAATAGCATCATGCACTTGAACCACACAGCAAACCCCACC  1554

Query 1546  TCAAATAGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCTGTAGCAGG  1619
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||..||||| |
Sbjct 1555  TCAAATAGTAATTTCTTGGACTTGAATCTCCCGCCACAGCACAACACAGGTCTGGGAGGGATCCCCATAGCA-G  1627

Query 1620  GGAAGAAGAGGT-----GAAGGTTT---------CGACCATGCCA-------CT---GTCAACCTCTTCCCATT  1669
            ..||.||.||.|     ||..||||         .||  |||.||       ||   |.| ||.|||.|||| .
Sbjct 1628  ACAACAACAGTTCTGTAGAGAGTTTAAATATGAAGGA--ATGGCAGGACGGGCTAAGGGC-ACTTCTACCCA-A  1697

Query 1670  CATT-ACAACAA-------GGACAG-------------CAGCCTACAAGTCTCCACACTACTGTGGCC------  1716
            |||| |||.|||       ||||.|             |..|||.|||  |.||| ||.||.|||..|      
Sbjct 1698  CATTAACATCAACTTTGGTGGACTGCCCAATTCTTCTTCCCCCTCCAA--CGCCA-ACCACAGTGCACCAACGT  1768

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1769  CCAACACTGCCACCACGGACAGCGTGAGTTGGGACAGCCCTGGCAGCTGGACAGACCCAGCCATCATCACAGGT  1842

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1843  ATTCCAGCATCTTCAGGAAACACTTTAGACTCTATTCAAGACGACAATCCTCCACACTGGCTAAAATCCCTACA  1916

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1917  GGCCCTCACAGAGATGGACGGCCCCAGCGCTGCCTCGTCACAACCCCATCACAGCGCCCCCTTCAGCACACAGA  1990

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 1991  TCCCTCTGCACAGAGCCAGTTGGAACCCCTACCCACCTCCTTCAAATCCCTCCAGCTTCCACTCTCCACCCCCA  2064

Query 1717  --------------------------------------------------------------------------  1716
                                                                                      
Sbjct 2065  GGCTTCCAGACAGCCTTCAGACCCCCCAGCAAAACCCCCACAGATCTGCTACAGAGTTCCACACTGGACCGCCA  2138

Query 1717  -  1716
             
Sbjct 2139  C  2139

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