Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06819
- Subject:
- XR_001748830.1
- Aligned Length:
- 3517
- Identities:
- 1234
- Gaps:
- 2281
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTAGCCGCGGCGCTGCTGCTGGGCTGCTGGGCTGGCGCGGAGTCCACCCTGCCGTCTCCGCCTTGGCTTCTGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGTCCAGAAGGCCAGGCATTTGCCGCCTCTGAGCGCTTCTGTTCCCCTTACCCGCAACCTCCTACTGCTCTTC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTCTCTCCCTCTCTTAGGGAGGTTGAAGCTGGTGCTGGTTTCTGTCGGCGCCACAGACTGACTGCTCTGCAAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CCCAGCCGAGGACCTGAATCCCGGAGACTAGAAGACCCTTGGCGGTGGCTCTTTCTAATAGCACTTTACCTGAA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GTGGGGTCGTGGTGGAGTTTCTCCTCCACCTCTCAATGCAAACACTATGCGGAGAGCAGTCTGCTTCCCTGCGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTGCCTGCTCCTTAATCTTCACGCTGCAGGGTGCTTTTCAGGAAACAATGATCATTTTTTGGCAATTAATCAG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAGAAGAGTGGGAAGCCGGTATTCATTTATAAGCATTCACAAGACATTGAGAAGAGCCTGGATATAGCCCCACA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AAAAATCTACAGACATAGCTACCATTCCTCTTCCGAAGCTCAAGTAAGCAAACGCCACCAGATTGTCAATTCAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATTTCCTAGACCCGCATATGACCCGTCTCTCAATCTGCTGGCCATGGATGGTCAAGATCTTGAAGTGGAAAAT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTCCCAATCCCAGCAGCAAATGTAATTGTGGTGACACTGCAAATGGATGTAAACAAGCTGAACATAACCTTGCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCGGATCTTCCGCCAAGGAGTGGCTGCAGCTTTAGGACTCTTACCCCAGCAAGTGCACATCAATCGCCTCATTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAAGAAGAACAGTATTGAACTGTTTGTGTCTCCCATAAACCGAAAAACAGGAATTTCTGATGCTCTGCCCTCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GAGGAAGTTCTTCGTTCACTTAATATCAATGTTTTGCATCAAAGTTTATCCCAGTTTGGAATTACAGAAGTCTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTGAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACAAAATCTGGAGCAAAGAAGGATTTTATGCTGTTG 1036
Query 1 -----------------------------------------ATGATTCTTCACAGATTAAAAGAAAGATTTCAG 33
|||||||||.|||||||||||||||||||||||
Sbjct 1037 TCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTGATGATTCTTTACAGATTAAAAGAAAGATTTCAG 1110
Query 34 CTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTC 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCACCTATCGCCCATCACATTACAGCCAGCACTGTC 1184
Query 108 CGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTC 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGGCCCCAAAGGTACTGAATGTTGTCGTGGACCCTC 1258
Query 182 AAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCC 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACCTCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCC 1332
Query 256 ATAGGACTTCAAAAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACC 329
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTACATTGGACATGAGTAGCTTGGGGAACATTGAACC 1406
Query 330 CTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGGAGTATCTGCAGTCAGCCAGCCGAATTCTCACAA 1480
Query 404 GGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTT 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTCCAAAGTGAATTCATGGAAATACCAATGAACTTT 1554
Query 478 GTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAAAAATCGCTATAAGACCATTTTACCAAATCCCCT 1628
Query 552 CAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGG 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCATTGAGCACCTACATTAATGCTAATTATATTAGGG 1702
Query 626 GCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAG 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGCCCCATGATCAACACCGTGGATGATTTCTGGCAG 1776
Query 700 ATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 ATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCACAAAACTCAAAGAAAAAAATGAGAAATGTGTGCT 1850
Query 774 ATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACT 847
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 ATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGGTTCTGGTTATCAGTGTAAATGAATGTGATAACT 1924
Query 848 ACACCATTCGAAACCTTGTCTTAA-------------------------------------------------- 871
||||||||||||||||||||||||
Sbjct 1925 ACACCATTCGAAACCTTGTCTTAAAGAAATAAATTGCCAGCAAGATGGGGGTGATAAAAGGCATTCAGTATTGT 1998
Query 872 ------------------------------------------------------------AGCAAGGAAGCCAC 885
||||||||||||||
Sbjct 1999 GGTTTGGATGACTTTTAGTTCTACAAGTGAATGAGGCATTTGGTGGCTGTTGCTATTTTCAGCAAGGAAGCCAC 2072
Query 886 ACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 ACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGATCACAAGACTCCAGACAGTGCCCAGCCCCTCCT 2146
Query 960 ACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTG 1033
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147 ACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCCAGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTG 2220
Query 1034 CAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTG 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221 CAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATTGGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTG 2294
Query 1108 GATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATT 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 GATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGGTGGAATGGTGCAAACCAGTGAGCAGTATGAATT 2368
Query 1182 TGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAG------------------- 1236
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAGCAGAGACTGTCCAGTGAGTCATTGAAGACTTGT 2442
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2443 CAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCACCCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGA 2516
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2517 AGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGTGGAAGACTGGGCAACATATTTAAGATTTCCAGC 2590
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2591 TCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATTATTCTGAAGGTTTTTTGATGATGGAGGTATGAT 2664
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2665 AGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGTACTGACTCTATCTGCCACACAGAATGTATGTAT 2738
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2739 GTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATGAGCTGCTGAAGACATTCGTATTATGTGTTAGAT 2812
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2813 GCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCAGCTGTTAAACTGTTCCTGTTTTGAAGTGCTATT 2886
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2887 ACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAGTGATTGATAATGGATTTTTAACAGAGAAGTCTT 2960
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2961 TGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTATATGGAAATGTGTCTTGATAATATTACCTATTAA 3034
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3035 ATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCACAATGATTGTCATTGGGTATATATGTATTTACT 3108
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3109 CTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTCTATCCACTGTATTTCCACATCGTGAGTCATTTT 3182
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3183 ACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTATCAAGAGTTTTAACTACTTGTCTCTCTTTTGCT 3256
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3257 AAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTCTCTCAACAAAAGGTATATGCCTTCAGGAATGAT 3330
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3331 ATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTCCATGTATGTCCTTACATTTCTGAAAGCTTTCAA 3404
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 3405 TCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCAAACACTAGCTGTTCTGCTCATATATGAATTTTT 3478
Query 1237 --------------------------------------- 1236
Sbjct 3479 AATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAA 3517
