Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06943
- Subject:
- XR_001752592.1
- Aligned Length:
- 4911
- Identities:
- 1370
- Gaps:
- 3446
Alignment
Query 1 --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 55 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 129 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 203 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 277 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 351 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 425 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 499 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 573 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 647 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 721 ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 794
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 795 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 869 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 943 CTCCTA--GAC----CTCAC----GCCCAC---------------CATCTTG-------GATT----------- 973
|||||| ||| || || |||||| ||||.|| ||||
Sbjct 963 CTCCTAGTGACTAGGCT-ACTTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCC 1035
Query 974 --------------------------------------------GGTTCTCGATCCCGTAC------------- 990
.|.|.||.||||.||.|
Sbjct 1036 AGATTTGAAATCAAGTTTGTTTGAGACGTGGATGACGATGGGGAAGATGTCCATCCTGTGCAGGGTGCAGACAC 1109
Query 991 --CCCAGCT--ACG-CCA---------------TCTTTG----------------------------------- 1009
.|||||| ||| ||| ||||||
Sbjct 1110 TGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAGTGAGTCAAGATCACAGG 1183
Query 1010 -------------------------------GCTCGA-------------------------AGAC--CATCCA 1025
||| || |||| ||.|||
Sbjct 1184 CCTCAGAGGAAGCAAAGGGAGCCAACGCCCAGCT-GAGGAAACTGAGATTCAAGGAGTTGGGAGACCTCACCCA 1256
Query 1026 -------------CCTCACTGGCCG------GT----CCCTCCTGCCGGCGCTG----------GAGGCCG--- 1063
|||.||||||.| || ..|||||||.|| |||| ||||.||
Sbjct 1257 CAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGG-GCTGTTGGGACCCAGAGGTCGGCG 1329
Query 1064 ---AG----CCC----CTCTGGGC----------------------CACCGTCTTTGGCA-------------- 1090
|| ||| |||.||.| |.||.||.|..|||
Sbjct 1330 ACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCTGCATTCCTGAAACCCTT 1403
Query 1091 GCCAG---AG---------CCACCACGAGGTCACCATGTCCT-ACC----CCATGCG---CTCC---------- 1134
.|||| || |||||.|| .||.||.||| ||| |||||.| ||||
Sbjct 1404 CCCAGGACAGCTCCCCTGCCCACCCCG-----CCCTTGACCTCACCTTTTCCATGAGGGACTCCACAGCATGGC 1472
Query 1135 --GT---GCAGCACCGG--------CACTTCCGCCTCGTGCACAA---------------------CCTCA-AC 1173
|| .|||||.||| |||.||..||||.||.|..| ||||| ||
Sbjct 1473 GGGTCACCCAGCAGCGGCCCCCGGACACCTCTCCCTCCTGGATGATGTCCCCTCTCTGGCTCCAGGCCTCATAC 1546
Query 1174 T---------TCA-------------------AGATGCCCTTTCCCATCGACCAGGACTTCTACGT-------C 1212
| ||| |||.||.||| |.| ||||..||.||.| |
Sbjct 1547 TCCTCCTGGCTCAAGTACTCTACAGCACTGGGAGAAGCTCTT---CTT-----AGGATGTCCACTTTACAAACC 1612
Query 1213 TCACC------------------------CACCTTCCA-------------GGA----------CCTCCTGAAC 1239
|.||| |||| |||| ||| ||||||| |
Sbjct 1613 TGACCCTGCACACCCCGCTCTGTGCCCTGCACC-TCCATCCTGAACTATCTGGACACAGCAGTGCCTCCTG--C 1683
Query 1240 CGCACTAC--------AGCTGGT----CAGCCCAC------GGGCTGGTACAAGGACCTCCGT----CATTACT 1291
|.|.||.| |||...| |||||||| || |||.||.|..|||||.| |.|.||
Sbjct 1684 CACCCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCCAGTGG---GGTCCAGGCCCCTCCCTGGAGCCTCAC- 1753
Query 1292 ACTACCGGG-CGCG--------------------CTGG--GAGCTCTACGA------CCGGAGCC-----GGGA 1331
||..|||| |.|| |||| |||..|||.|| .|.||||| |.||
Sbjct 1754 -CTTGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAGGGCTATGAGCTGCTGCTGAGCCCTGCAGAGA 1826
Query 1332 CCCCCACGAGACCCAGAACCTG--GCCACCGACC-------CGCGCT------TTGC-----------TC---- 1375
||..|| |||.|||.||.||.| |||.||..|| .||||| |.|| ||
Sbjct 1827 CCAGCA-GAGGCCCTGACCCAGCTGCCTCCTGCCAGGCTGGAGCGCTCCATCCTGGCGGCCATGCCAGTCTCCA 1899
Query 1376 -AGCTT-----------------------------CTGGAGATGCT-----------------TCGGGACC--- 1399
||||| ||||||||||| .|||||||
Sbjct 1900 GAGCTTTCAAAAGACTCCAGGGCCTCGGCCCACCCCTGGAGATGCTGATTTACTTGTCCTGGGGCGGGACCCAG 1973
Query 1400 ----AGCTG-------GCCA------AGTGGCAGTGGGAGACCCAC-----GACCCC-----------TGGGTG 1440
.|||| |||| || ||| ||||| ||||.| |||||
Sbjct 1974 GGGGTGCTGTTGAGCAGCCAGCGTACAG-GGC---------CCCACTCCAGGACCTCAATATTCATGGTGGGT- 2036
Query 1441 TGCGCCCCCGACGGCGTCCTGGAG-----GAGA-AGCTCT-----CTCCCCAGTGCCA-GCCCCTCC------- 1495
|||..|.|.||..||||||| |||| ||||.| .|.|..||||||| |||.||||
Sbjct 2037 ----CCCTGGCCTGCAGCCTGGAGTCACCGAGAGAGCTGTTAGAAATGCAGAGTGCCAGGCCTCTCCCTGGACC 2106
Query 1496 --------------------------------ACAATGAGCTG------------------------------- 1506
.||||||| ||
Sbjct 2107 TGCTGGCTCCGATCCCCAGGGGACTTGAGTTTGCAATGAG-TGATGGGGGTGCTGAGCTCAACACTCCTGCTTT 2179
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2180 CTAGCACTGTGCGTTCCGTGCACTTGAAACTTGGAGCCTCCCATAGGCTGATCTAGAACAATGGTTTCCTTTTC 2253
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2254 TTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCTCAATCCCGGCTCACT 2327
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2328 GCAACCTCTGCCTCCGGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCTGC 2401
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2402 CACCACGCCCAGCTAAGTTTTTTGTATTTTTAATAGAGACAGGGTTTCACCAGGTTACCCAGGCTGGTCTCGAA 2475
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2476 CTCCTGACCTCAGATGATCCACCCGCCTCGGCCTCCCAAAGTGTTTGGATTACAGGTGTGAGCCACCATGCTCG 2549
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2550 GCCTAGAGCAGTGGTTTTCAATGGAGCAAGGCAGGGGGCAATGTCACTCCCCAGGGAGGGTGACCAGCTGTCCC 2623
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2624 TGCTTGCCCAGGACCGAGGGGCTTCCCTGCAAGTGGGGCTTTCAGTGCTAAGACCAAGACAGTCCTAGGAGAAC 2697
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2698 CAGGGGACCCTTGGCAACCTATAGAGACATTTCTGGTTGTCACAGCTGGGGCATGGGAGTAGTCCCGGCATCCT 2771
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2772 GGGTAGGGCGGCCAGGGATGCTGCTCTATATCCTGCAGTGCCCAGGACGGCCCCACCACAGACGGGGATCCAGC 2845
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2846 CCCAAACGTCCATGGTACCAAAGCTAAGAAACCCAGAGCTAAGAAACCCAGATCTAGAATGTTCTAGAATGAAC 2919
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2920 ATTTCATTTGCAATATATAAAGCATCCATCACAAAGAAACAACATCTTCAGCAGTGATCTTGGCAGGCTTCCCT 2993
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2994 CCTTAGGGGGGTCTCACCACGCCCACCCTCTATTGCTGGGCAGGAGGAGGAAGCCGAGGCAGGCTGGGTGCCAT 3067
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3068 TTCCCTGTGGGCCTCTCTGGGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGATGGTGCCG 3141
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3142 TGCGCGGCAGTATCCTTCATGGTGTAAGAGTTCACGCGGTGGGCATGCCAGCAGCCGCAGCCCTGGAACATGGT 3215
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3216 GTCGGTGACGTGCAGGACCTCGTTGCAATGCACCTGCAGCTCCCCTTTGGCCCTGCCCTCCATGGCCAGGTTGA 3289
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3290 CCCGGATGTAGAATGAGTCCCCCGAGGTCGCCACTTTGGCCTCCAGGTCCTGGAGTAGCCTCTTATAACCTGAT 3363
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3364 AAAAGGGGACATGAGCCACAGATGAGCCACAGATACGAGCCTCTGCGAGGAAGGTTGCAGAAAATTAAAGTAGG 3437
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3438 AGAGAAGGAAGGACCCTCCCAGTCTCAGAAGCTGCTCTGGCACTGGAGTCAGTGGGTGGGAGGTTTCCAGCTGG 3511
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3512 CTTGGGGGCCTCCTGGGGACCTGGGGCACAGCCTGGCTGATCCTCTCTTGGCTCTGGGGGTCCCTGGCTGCTGG 3585
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3586 GCGTGCAGAAGAACCACCAGGGACTTAAGGGTCATGGAGTCTGGCCAGGCAGCTGTGCACACGAGAGGAGTGGT 3659
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3660 ATGTGTACCGTCCGTGTTGACCTTCACAGACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGCCCCACGGCCT 3733
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3734 CCTCCAGGGTCGTGTCCTCCAGGACTGCCTTGAACAAGGGCTCTGAGGCTTCGTAATCAACCTGAGGGCAAGTC 3807
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3808 GAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAATCCAGCCAGAAGACAGAAGGCGCTGAGGGCACTGAGGCGA 3881
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3882 GGCGCGGGCCAGCCCTGCCGTAGGACCACTGCCTGCACGCCTTGGTCAAAACAAAGCCACACACCAGAGCCTCT 3955
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3956 GTGGGGCCTTCACACCTCTAGTGATGCGTGCTACACATAGTGCTGGCCAGAGAGTCAACTGCCAACCCTTCCCC 4029
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4030 AGTCGAGATCGGGGGTTCTTTGTGATAAGCACTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAAAGAACCT 4103
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4104 CGGTTCTAGAACATTCAAGAGCATTCTAGATAGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCTGCGGGCT 4177
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4178 ATACCGGGCCCTACAGGATGCTGAGTGGCATCCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCACCCACAG 4251
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4252 CCTTCCCCACTGTGAAGGCCCACCCCCCAGGGCTTCCACCATCCACTTCATTTCTTCTCAATATTGTTCTAAGC 4325
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4326 TTAGGAGAGTAGATATTTTTACAATAAAAATTAAGATGTGTTTTAACACCATTAGAATCTAATTGGCCCCCTTA 4399
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4400 GGATATCGGGACTATCTCCCTGAACATCGTCAAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGATAATTGGG 4473
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4474 AACCTTAAGAGCAGGGTTCCCCAACCCCTGGGCCACATACTGGTACTGGTCCATGGTCCATCAGGACCCGGGTC 4547
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4548 ACACAGCAGGAGGGGCGTGGTGGGCAAGTGAGCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAGCACAGCA 4621
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4622 GTAGATTCTCAGAGGAGCATGAGCCCTATCGTGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTCCTTATGA 4695
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4696 GAATCTAATTCCTGATGATCTGTTACCGTCTCCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGAAAACAAG 4769
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4770 CTCAGGGCTCCCACTGATTCTGAATTATGGTTCAGTGTATGATTCTTTCATTACATATTACAGTGTAATAATAA 4843
Query 1507 --------------------------- 1506
Sbjct 4844 TAGAAATAAAGTGTACAATCAATGTAA 4870
