Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_06943
- Subject:
- XR_002958057.1
- Aligned Length:
- 5584
- Identities:
- 1380
- Gaps:
- 4105
Alignment
Query 1 --------------------ATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 54
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGTCCGAGCCGCCGCCGCCATGAGCTGCCCCGTGCCCGCCTGCTGCGCGCTGCTGCTAGTCCTGGGGCTCTGC 74
Query 55 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGGCGCGTCCCCGGAACGCACTGCTGCTCCTCGCGGATGACGGAGGCTTTGAGAGTGGCGCGTACAACAACAG 148
Query 129 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGCCATCGCCACCCCGCACCTGGACGCCTTGGCCCGCCGCAGCCTCCTCTTTCGCAATGCCTTCACCTCGGTCA 222
Query 203 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GCAGCTGCTCTCCCAGCCGCGCCAGCCTCCTCACTGGCCTGCCCCAGCATCAGAATGGGATGTACGGGCTGCAC 296
Query 277 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAGGACGTGCACCACTTCAACTCCTTCGACAAGGTGCGGAGCCTGCCGCTGCTGCTCAGCCAAGCTGGTGTGCG 370
Query 351 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CACAGGCATCATCGGGAAGAAGCACGTGGGGCCGGAGACCGTGTACCCGTTTGACTTTGCGTACACGGAGGAGA 444
Query 425 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATGGCTCCGTCCTCCAGGTGGGGCGGAACATCACTAGAATTAAGCTGCTCGTCCGGAAATTCCTGCAGACTCAG 518
Query 499 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATGACCGGCCTTTCTTCCTCTACGTCGCCTTCCACGACCCCCACCGCTGTGGGCACTCCCAGCCCCAGTACGG 592
Query 573 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AACCTTCTGTGAGAAGTTTGGCAACGGAGAGAGCGGCATGGGTCGTATCCCAGACTGGACCCCCCAGGCCTACG 666
Query 647 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 ACCCACTGGACGTGCTGGTGCCTTACTTCGTCCCCAACACCCCGGCAGCCCGAGCCGACCTGGCCGCTCAGTAC 740
Query 721 ACCACCGTAGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 794
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACCGTCGGCCGCATGGACCAAGGAGTTGGACTGGTGCTCCAGGAGCTGCGTGACGCCGGTGTCCTGAACGA 814
Query 795 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 868
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CACACTGGTGATCTTCACGTCCGACAACGGGATCCCCTTCCCCAGCGGCAGGACCAACCTGTACTGGCCGGGCA 888
Query 869 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTGCTGAACCCTTACTGGTGTCATCCCCGGAGCACCCAAAACGCTGGGGCCAAGTCAGCGAGGCCTACGTGAGC 962
Query 943 CTCCTAGA-------------CCTCA------------------------------------------------ 955
|||||||| .||||
Sbjct 963 CTCCTAGAGGAAAAGAATGAGGCTCAGAGAGGTGAAGTAAGCTGCTCAGGATTGCACAGCTGTGACTAGGCTAC 1036
Query 956 ---CGCCCAC---------------CATC----------------------------------------TTGGA 971
.|||||| |||| ||.|.
Sbjct 1037 TTTTGCCCACTGTAAAAGGCACCGTCATCCTGGTATCAAGATTCTGGAGAGGCCAGATTTGAAATCAAGTTTGT 1110
Query 972 TTGGT-------------------------------------------------------TCTCGATCCCGT-A 989
||||| |||||.| |.|| |
Sbjct 1111 TTGGTAAGCGTGAAATCAGAGCAGTTGTTGTTGTTGTTGTTTTGTTTTGTTGAGACAGAGTCTCGCT-CTGTCA 1183
Query 990 CCC-----------CAGCTACGCCATCTTTGGCTCGAAGACC----ATCCACCTC------------ACTGGCC 1036
||| |||...|||.||| ||||||| ||| .|||||||| |.|..|.
Sbjct 1184 CCCAGGCTGGAGTGCAGTGGCGCGATC-TTGGCTC----ACCGCAACTCCACCTCCCAGTTCAAGTAATTATCA 1252
Query 1037 GGTC----CCTCC--------------TGCCGGCG-------------CTGG---------------------- 1057
.||| ||||| |.|.|||| ||||
Sbjct 1253 TGTCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCGCCGCCACACCTGGCTAGTTTTTGTATTTTTAATAG 1326
Query 1058 ------------------------AGGC------CGA---------------------GCCC-CTCTGGGCCAC 1079
|||| ||| |||| |.|| ||||.|
Sbjct 1327 AGACAGGGTTTCTCCATGTTGGCCAGGCTGGTCTCGAACTGCTGACCTCAAGCAATCTGCCCACCCT-GGCCTC 1399
Query 1080 C----GTCTTTGG----CA-GCCAGAGCCACCACG-------------AGG----TCACCATGTCCTA------ 1121
| ||..|.|| || ||..||||||||||| ||| || .||||..|.|
Sbjct 1400 CCAAAGTGCTGGGATTACAGGCGTGAGCCACCACGCCCGGCCAAAATCAGGGGAATC-TCATGAGCAATCAGCG 1472
Query 1122 --CCCCATGCGCTCC-------GTGCAGCACCGGCACT---------TCCGCCTCGTGCACAACCTCA------ 1171
.|||.|| ||| ||||.|.|.||||.|| ||.||.||.|||| ||||.||
Sbjct 1473 GGGCCCTTG---TCCCAAAGTTGTGCGGAAACGGCCCTGTCAGCGCCTCAGCTTCCTGCA-AACCGCAGAGCAC 1542
Query 1172 ACTTCAAGA------TGCC-----CTTT-------CCCA---------TCGA---------CCAG--------- 1200
|| ||.||| |||| |||| |||| |||| ||||
Sbjct 1543 AC-TCCAGAGGCACCTGCCGTGGGCTTTGGGGGAGCCCAGGAGCCGCTTCGAAGCCCCTGCCCAGCCCCCAGCG 1615
Query 1201 -----------GA-CTTCT-----------------------ACGT--------------------------CT 1213
|| ||||| |||| ||
Sbjct 1616 TGCACCTACTTGAGCTTCTTTGCCATCTTCTCGTTGACAGAGACGTGGATGACGATGGGGAAGATGTCCATCCT 1689
Query 1214 ----------CACCCACCTTCCA---GGACCTCCTGAACCGCA--------CT--------------------- 1245
||..|||..|||| ||||.|||.|.|..||| ||
Sbjct 1690 GTGCAGGGTGCAGACACTGTCCAGCTGGACGTCCAGGAGGGCATGGGTGTTCTTTGTGGGAGGGAGAGAAGAAG 1763
Query 1246 ------------ACAG--CT--------------GGTCAGCCCACG---GGCT-----------GGTACAAGGA 1277
|||| || || ||||.||| .||| |.|.||||||
Sbjct 1764 TGAGTCAAGATCACAGGCCTCAGAGGAAGCAAAGGG--AGCCAACGCCCAGCTGAGGAAACTGAGATTCAAGGA 1835
Query 1278 ---------------CCTCCGTCA--TTACTACTACCGGGC---------------GC----GCTGG------- 1308
||.|.|||| |...|.|||.|.||| || |||||
Sbjct 1836 GTTGGGAGACCTCACCCACAGTCACGTGGATCCTAACTGGCTGAGATGAGTTTTGGGCTCCTGCTGGGCTGTTG 1909
Query 1309 -------GAGCTCTACGAC---------------------CGGAGCCGGGACC----------CCCAC------ 1338
|||.||..|||| |||..||.|.||| |||.|
Sbjct 1910 GGACCCAGAGGTCGGCGACAAGGTCACCCAGGTCTCAGGTCGGTCCCTGTACCTTTATCTCATCCCCCTCCTCT 1983
Query 1339 --------GAGA-----CCCAGAA-------CCTGGCCACCGACCCGCGCTTTG--CTCAGCTT---------- 1380
||.| |||||.| ||||.|||| ||||| |.||| ||||.|||
Sbjct 1984 GCATTCCTGAAACCCTTCCCAGGACAGCTCCCCTGCCCAC---CCCGC-CCTTGACCTCACCTTTTCCATGAGG 2053
Query 1381 -----------------------------------------------------CTGGA-GATG------CTTCG 1394
||||| |||| ||..|
Sbjct 2054 GACTCCACAGCATGGCGGGTCACCCAGCAGCGGCCCCCGGACACCTCTCCCTCCTGGATGATGTCCCCTCTCTG 2127
Query 1395 GGACCAG--------------CTGGC-CAAGT------------------------------------------ 1411
|..|||| ||||| |||||
Sbjct 2128 GCTCCAGGCCTCATACTCCTCCTGGCTCAAGTACTCTACAGGTGACATTGGACGGGGCCATCATAGACCAGCTG 2201
Query 1412 -------GGCAGTGGGAGACCCACG------ACCCCTGGGTGTGCGC-----CCCCGACGGCGTCCTGGAGGAG 1467
|.|.|.|||||.||||.| ||||| |||.|.| |||.|.|.|| .||| ||||
Sbjct 2202 TGTGGGGGTCTGGGGGAGTCCCATGGTAAACACCCC----TGTCCCCGTGAACCCTGCCAGC--ACTG--GGAG 2267
Query 1468 AAGCTCT-----------------------------------CTCCC----CAGTG-CCAGCCCCTCCACAATG 1501
||||||| |.||| |.||| ||.||.||||||...||
Sbjct 2268 AAGCTCTTCTTAGGATGTCCACTTTACAAACCTGACCCTGCACACCCCGCTCTGTGCCCTGCACCTCCATCCTG 2341
Query 1502 AGCTG--------------------------------------------------------------------- 1506
|.||.
Sbjct 2342 AACTATCTGGACACAGCAGTGCCTCCTGCCACCCTGCCAGCACCGAGCCCCTCTTCCAGCCCACCCCAGTGGGG 2415
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2416 TCCAGGCCCCTCCCTGGAGCCTCACCTTGCGGGTCACGGTGCACTGCTGAGTCATGTCCTGGATGAGGGCTATG 2489
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2490 AGCTGCTGCTGAGCCCTGCAGAGACCAGCAGAGGCCCTGACCCAGCTGCCTCCTGCCAGGCTGGAGCGCTCCAT 2563
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2564 CCTGGCGGCCATGCCAGTCTCCAGAGCTTTCAAAAGACTCCAGGGCCTCGGCCCACCCCTGGAGATGCTGATTT 2637
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2638 ACTTGTCCTGGGGCGGGACCCAGGGGGTGCTGTTGAGCAGCCAGCGTACAGGGCCCCACTCCAGGACCTCAATA 2711
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2712 TTCATGGTGGGTCCCTGGCCTGCAGCCTGGAGTCACCGAGAGAGCTGTTAGAAATGCAGAGTGCCAGGCCTCTC 2785
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2786 CCTGGACCTGCTGGCTCCGATCCCCAGGGGACTTGAGTTTGCAATGAGTGATGGGGGTGCTGAGCTCAACACTC 2859
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2860 CTGCTTTCTAGCACTGTGCGTTCCGTGCACTTGAAACTTGGAGCCTCCCATAGGCTGATCTAGAACAATGGTTT 2933
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 2934 CCTTTTCTTTTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTCGCCCAGGCTGGAGTGCAATGGCTCAATCCCG 3007
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3008 GCTCACTGCAACCTCTGCCTCCGGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGG 3081
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3082 CACCTGCCACCACGCCCAGCTAAGTTTTTTGTATTTTTAATAGAGACAGGGTTTCACCAGGTTACCCAGGCTGG 3155
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3156 TCTCGAACTCCTGACCTCAGATGATCCACCCGCCTCGGCCTCCCAAAGTGTTTGGATTACAGGTGTGAGCCACC 3229
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3230 ATGCTCGGCCTAGAGCAGTGGTTTTCAATGGAGCAAGGCAGGGGGCAATGTCACTCCCCAGGGAGGGTGACCAG 3303
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3304 CTGTCCCTGCTTGCCCAGGACCGAGGGGCTTCCCTGCAAGTGGGGCTTTCAGTGCTAAGACCAAGACAGTCCTA 3377
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3378 GGAGAACCAGGGGACCCTTGGCAACCTATAGAGACATTTCTGGTTGTCACAGCTGGGGCATGGGAGTAGTCCCG 3451
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3452 GCATCCTGGGTAGGGCGGCCAGGGATGCTGCTCTATATCCTGCAGTGCCCAGGACGGCCCCACCACAGACGGGG 3525
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3526 ATCCAGCCCCAAACGTCCATGGTACCAAAGCTAAGAAACCCAGAGCTAAGAAACCCAGATCTAGAATGTTCTAG 3599
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3600 AATGAACATTTCATTTGCAATATATAAAGCATCCATCACAAAGAAACAACATCTTCAGCAGTGATCTTGGCAGG 3673
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3674 CTTCCCTCCTTAGGGGGGTCTCACCACGCCCACCCTCTATTGCTGGGCAGGAGGAGGAAGCCGAGGCAGGCTGG 3747
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3748 GTGCCATTTCCCTGTGGGCCTCTCTGGGGACGCACCGAGCTCGAGGCAGCTGCTCACCTGGAGTAGTTGGGGAT 3821
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3822 GGTGCCGTGCGCGGCAGTATCCTTCATGGTGTAAGAGTTCACGCGGTGGGCATGCCAGCAGCCGCAGCCCTGGA 3895
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3896 ACATGGTGTCGGTGACGTGCAGGACCTCGTTGCAATGCACCTGCAGCTCCCCTTTGGCCCTGCCCTCCATGGCC 3969
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 3970 AGGTTGACCCGGATGTAGAATGAGTCCCCCGAGGTCGCCACTTTGGCCTCCAGGTCCTGGAGTAGCCTCTTATA 4043
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4044 ACCTGATAAAAGGGGACATGAGCCACAGATGAGCCACAGATACGAGCCTCTGCGAGGAAGGTTGCAGAAAATTA 4117
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4118 AAGTAGGAGAGAAGGAAGGACCCTCCCAGTCTCAGAAGCTGCTCTGGCACTGGAGTCAGTGGGTGGGAGGTTTC 4191
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4192 CAGCTGGCTTGGGGGCCTCCTGGGGACCTGGGGCACAGCCTGGCTGATCCTCTCTTGGCTCTGGGGGTCCCTGG 4265
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4266 CTGCTGGGCGTGCAGAAGAACCACCAGGGACTTAAGGGTCATGGAGTCTGGCCAGGCAGCTGTGCACACGAGAG 4339
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4340 GAGTGGTATGTGTACCGTCCGTGTTGACCTTCACAGACAGGCAGCAGAAGCCGTCCACCCTCCTGAGAAGCCCC 4413
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4414 ACGGCCTCCTCCAGGGTCGTGTCCTCCAGGACTGCCTTGAACAAGGGCTCTGAGGCTTCGTAATCAACCTGAGG 4487
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4488 GCAAGTCGAGAAGGTCAGTCTCTTTCCCCCGGGACTCTGAATCCAGCCAGAAGACAGAAGGCGCTGAGGGCACT 4561
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4562 GAGGCGAGGCGCGGGCCAGCCCTGCCGTAGGACCACTGCCTGCACGCCTTGGTCAAAACAAAGCCACACACCAG 4635
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4636 AGCCTCTGTGGGGCCTTCACACCTCTAGTGATGCGTGCTACACATAGTGCTGGCCAGAGAGTCAACTGCCAACC 4709
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4710 CTTCCCCAGTCGAGATCGGGGGTTCTTTGTGATAAGCACTTTCCTGTCTTGAAAAAGAAAAGAAAAGAAAAGAA 4783
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4784 AGAACCTCGGTTCTAGAACATTCAAGAGCATTCTAGATAGAGGTTTCTTAGCCTTGGGATCATTCTGTGCTGCT 4857
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4858 GCGGGCTATACCGGGCCCTACAGGATGCTGAGTGGCATCCCTGGCCTTCACCTACCCGATGCCCTGGCTCTCCA 4931
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 4932 CCCACAGCCTTCCCCACTGTGAAGGCCCACCCCCCAGGGCTTCCACCATCCACTTCATTTCTTCTCAATATTGT 5005
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5006 TCTAAGCTTAGGAGAGTAGATATTTTTACAATAAAAATTAAGATGTGTTTTAACACCATTAGAATCTAATTGGC 5079
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5080 CCCCTTAGGATATCGGGACTATCTCCCTGAACATCGTCAAGGGGCTCTGTTGCTTGAACTACCTCAGAGCTGAT 5153
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5154 AATTGGGAACCTTAAGAGCAGGGTTCCCCAACCCCTGGGCCACATACTGGTACTGGTCCATGGTCCATCAGGAC 5227
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5228 CCGGGTCACACAGCAGGAGGGGCGTGGTGGGCAAGTGAGCATTACGGCCTCAGCTCCACCTCCTGTCAGCTCAG 5301
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5302 CACAGCAGTAGATTCTCAGAGGAGCATGAGCCCTATCGTGAACTGTGCAAGTGAGGGATCTAGGTTTCACGCTC 5375
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5376 CTTATGAGAATCTAATTCCTGATGATCTGTTACCGTCTCCCATCACCCCCAGATGGGACCGTCTAGTTGCAGGA 5449
Query 1507 -------------------------------------------------------------------------- 1506
Sbjct 5450 AAACAAGCTCAGGGCTCCCACTGATTCTGAATTATGGTTCAGTGTATGATTCTTTCATTACATATTACAGTGTA 5523
Query 1507 ---------------------------------- 1506
Sbjct 5524 ATAATAATAGAAATAAAGTGTACAATCAATGTAA 5557
