Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07162
Subject:
NM_003445.3
Aligned Length:
1873
Identities:
1399
Gaps:
281

Alignment

Query    1  ATGATTTCACCTTCACTTGAACTGCTTCATTCAGGACTCTGCAAATTCCCTGAAGTAGAAGGAAAAATGACCAC  74
                                                                              ||||||||
Sbjct    1  ------------------------------------------------------------------ATGACCAC  8

Query   75  ATTCAAAGAGGCAGTGACATTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTG  148
            ||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    9  ATTCAAGGAGGCAGTGACCTTCAAGGATGTGGCTGTGGTCTTCACTGAGGAGGAGCTGGGGCTGCTGGACCCTG  82

Query  149  CCCAGAGGAAGCTGTACCGAGATGTGATGCTAGAGAACTTCAGGAACCTGCTCTCAGTAGGGAATCAACCATTC  222
            |||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||.|||||||.|||
Sbjct   83  CCCAGAGGAAGCTGTACCGAGATGTGATGCTGGAGAACTTCAGGAACCTGCTCTCAGTGGGGCATCAACCGTTC  156

Query  223  CACCAAGATACTTTCCACTT-CTTAGGGAAGGAAAAGTTTTGGAAGATGAAGACAACAAGCCAAAGAGAAGGGA  295
            |||||||||||||.|||||| ||.|||||| |||||||||||||.||||..||||.|||.||||||||||||||
Sbjct  157  CACCAAGATACTTGCCACTTCCTAAGGGAA-GAAAAGTTTTGGATGATGGGGACAGCAACCCAAAGAGAAGGGA  229

Query  296  ATTCAGGAGGCAAGATCCAAATTGAGATGGAGACTGTTCCAGAAGCAGGACCACATGAAGAGTGGTCCTGTCAG  369
            |||||||||||||||||||||.||||.|||||.|||||||||||||||||.|||||||||||||||||||.|||
Sbjct  230  ATTCAGGAGGCAAGATCCAAACTGAGTTGGAGTCTGTTCCAGAAGCAGGAGCACATGAAGAGTGGTCCTGCCAG  303

Query  370  CAAATATGGGAACAAATTGCAAGTGACCTAACCAGGTCTCAAAACTCCATAAGGAACAGCTCTCAGTTCTTCAA  443
            |||||.||||||||||||||||..|||.|||||||||||||..||||.||.|..||.|.||||||||||||..|
Sbjct  304  CAAATCTGGGAACAAATTGCAAAAGACTTAACCAGGTCTCAGGACTCTATCATAAATAACTCTCAGTTCTTTGA  377

Query  444  AGAAGGTGATGTCCCCTGCCAGATTGAGGCAAGACTATCTATAAGTCACGTGCA--ACAGAAACCTTACC---G  512
            |.|.|||||||||||||.||||.||||.|||.|||||.|.|.||.|||  |.||  |||||||||||.||   |
Sbjct  378  AAATGGTGATGTCCCCTCCCAGGTTGAAGCAGGACTACCCACAATTCA--TACAGGACAGAAACCTTCCCAGGG  449

Query  513  TTGTAATGAA-TGTAAACAGTCCATCAGTGATGTTTCTGTCTTTGATCTTCATCAACAATCACACTCAGGAGAG  585
            |.|    ||| ||||||||||||.|||||||||||.|..||||||||||||.|||.||.|.|.||||||.||||
Sbjct  450  TGG----GAAGTGTAAACAGTCCTTCAGTGATGTTCCCATCTTTGATCTTCCTCAGCAGTTATACTCAGAAGAG  519

Query  586  AAATCTCATACATGTGGTGAGTGTGGAAAAAGCTTCTGTTACAGCCCAGCCCTTCATATTCATCAGAGAGTCCA  659
            ||.|||.|||||||||.||||||||||||||||.|||||||||.|.||||.||||||.||||||||||||||||
Sbjct  520  AAGTCTTATACATGTGATGAGTGTGGAAAAAGCATCTGTTACATCTCAGCTCTTCATGTTCATCAGAGAGTCCA  593

Query  660  TATGGGAGAAAAATGCTATAAGTGTGATGTGTGTGGTAAGGAATTTAATCAGAGCTCACATCTGCAAACTCATC  733
            ..|||||||.|||..||.||.|||||||||||||||.||||||||||.|||.||||||||||||||||||||||
Sbjct  594  CGTGGGAGAGAAACTCTTTATGTGTGATGTGTGTGGCAAGGAATTTAGTCAAAGCTCACATCTGCAAACTCATC  667

Query  734  AGAGAGTCCATACTGGAGAGAAACCATTCAAACGTGGGCAATGTGGGAAAGGCTTCCATAGTAGATCAGCACTT  807
            ||||||||||.|||||||||||||||||||||.|||.|||||||||||||||.|||..|.||||||||||||||
Sbjct  668  AGAGAGTCCACACTGGAGAGAAACCATTCAAATGTGAGCAATGTGGGAAAGGTTTCAGTCGTAGATCAGCACTT  741

Query  808  AATGTTCATTGCAAATTGCACACAGGAGAGAAACCTTATAATTGTGAGGAATGTGGGAAAGCCTTCATTCATGA  881
            |||||||||.|.|||||.||||||||||||||||||||.|.||||||||.|||||||||.||||||||||||||
Sbjct  742  AATGTTCATCGTAAATTACACACAGGAGAGAAACCTTACATTTGTGAGGCATGTGGGAAGGCCTTCATTCATGA  815

Query  882  TTCACAGCTTCAGGAACATCAGAGAATCCATACTGGGGAGAAGCCATTCAAATGTGATATATGTGGTAAGAGCT  955
            |||.||||||.||||||||.||||||||||||||||||||||.||||||||||||||||||||||||||||.||
Sbjct  816  TTCCCAGCTTAAGGAACATAAGAGAATCCATACTGGGGAGAAACCATTCAAATGTGATATATGTGGTAAGACCT  889

Query  956  TCCGTGTTAGATCAAGACTTAATAGGCATTCCATGGTTCACACAGGAGAAAAACCATTCAGATGTGATACATGT  1029
            ||..|.||||.|||||||||||.||.||||||||||||||||||||||||||||||||.||.||||||||||||
Sbjct  890  TCTATTTTAGGTCAAGACTTAAGAGCCATTCCATGGTTCACACAGGAGAAAAACCATTTAGGTGTGATACATGT  963

Query 1030  GGCAAGAACTTTCGTCAGAGATCAGCACTTAATAGTCATTCCATGGTCCACATAGAAGAGAAGCCATACAAATG  1103
            |..||||.|||||.|||||||||||||||||||||.||||.|||||||||||.||.||||||.||.||||.|||
Sbjct  964  GATAAGAGCTTTCATCAGAGATCAGCACTTAATAGGCATTGCATGGTCCACACAGGAGAGAAACCGTACAGATG  1037

Query 1104  TGAGCAATGTGGAAAAGGCTTCATTTGTAGGCGAGATTTTTGTAAGCATCAGATGGTCCACACAGGAGAGAAAC  1177
            ||||||.||||||||||||||.|||.||||||.||||||||.||||||||||.|||||||||||||||||||||
Sbjct 1038  TGAGCAGTGTGGAAAAGGCTTTATTGGTAGGCTAGATTTTTATAAGCATCAGGTGGTCCACACAGGAGAGAAAC  1111

Query 1178  CATATAATTGTAAAGAATGTGGGAAGACCTTCAGATGGTCCTCATGTCTTTTGAACCATCAGCAAGTCCACAGT  1251
            |||||||||||||||||||||||||||.||||||||||||||||||.||||||||||||||||.||||||||||
Sbjct 1112  CATATAATTGTAAAGAATGTGGGAAGAGCTTCAGATGGTCCTCATGCCTTTTGAACCATCAGCGAGTCCACAGT  1185

Query 1252  GGACAAAAATCCTTCAAATGTGAAGAATGTGGGAAGGGATTTTATACAAATTCACGACGATCTTCCCATCAGAG  1325
            |||.|||||..|||||||||||||||||||||.||||||||||||||||||||||.||..||||||||||||||
Sbjct 1186  GGAGAAAAAAGCTTCAAATGTGAAGAATGTGGAAAGGGATTTTATACAAATTCACAACTGTCTTCCCATCAGAG  1259

Query 1326  ATCCCACAATGGAGAAAAGCCATATAACTGTGAGGAGTGTGGTAAGGACTATAAAAGGAGGTTGGATCTTGAGT  1399
            ||||||||.|||.||||||||||||||.||||||||||||||.||||.||||...|..|.|||..|||||||.|
Sbjct 1260  ATCCCACAGTGGTGAAAAGCCATATAAATGTGAGGAGTGTGGGAAGGGCTATGTTACTAAGTTTAATCTTGACT  1333

Query 1400  TTCACCAGAGGGTCCACACGGGTGAGAGACCCTATAATTGTAAGGAATGTGGCAAGAGCTTTGGCTGGGCCTCC  1473
            |.||||||||||||||||||||.||||||||.||||||||||||||||||||.||||.||||.||.|||||||.
Sbjct 1334  TGCACCAGAGGGTCCACACGGGAGAGAGACCTTATAATTGTAAGGAATGTGGGAAGAACTTTAGCCGGGCCTCA  1407

Query 1474  TGTCTTTTGAAACATCAGAGACTCCACAGTGGGGAAAAACCTTTCAAATGTGAAGAGTGTGGAAAGAGATTTAC  1547
            .||.|||||||.|||.|||||||||||.|...|.|||||||.|||||||||||.||.|||||||||||..||  
Sbjct 1408  AGTATTTTGAATCATAAGAGACTCCACTGCCAGAAAAAACCATTCAAATGTGAGGACTGTGGAAAGAGGCTT--  1479

Query 1548  TCAGAGTACACA--ACTTCATTC--------CCATCAGACATGCCATACTGGAGAAAAGCTATACAAATGTGAG  1611
                 |||||||  |   |||.|        |||.|.||.|..|.|||.|||.|||||.|.||.||||||||||
Sbjct 1480  -----GTACACAGGA---CATACCGTAAAGACCAGCCGAGAGACTATAGTGGGGAAAACCCATCCAAATGTGAG  1545

Query 1612  CAGTGTGAGAAGGGGTACAACAGTAAATTTAATCTTGACATGCACCAGAGGGTCCACAGGGGAGAGCGACCCTA  1685
            .|.||||.||...|.|||||.||....||.|||||.||                                  ||
Sbjct 1546  GATTGTGGGAGACGCTACAAGAGGCGCTTGAATCTGGA----------------------------------TA  1585

Query 1686  TAATTGTAAGGAATGTGGAAAGAGCTTTGGCTGGGCTTCATGTCTTT-----TGAAACATCAGAGACTCCACAG  1754
            ||.||.||                             |||| |.|||     |||.|||               
Sbjct 1586  TACTTTTA-----------------------------TCAT-TATTTCTAAATGACACA---------------  1614

Query 1755  TGGAGAAAAGCCATTGAAATCTGGAGTGTGGGAAGAGATCTACTCAGAATTCACAGCTTCATTTACATCAGTAA  1828
                                                                                      
Sbjct 1615  --------------------------------------------------------------------------  1614

Query 1829  GTCTATGTGGGAGAAAAGCCATA  1851
                                   
Sbjct 1615  -----------------------  1614

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