Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07193
Subject:
NM_001369599.1
Aligned Length:
1772
Identities:
1559
Gaps:
187

Alignment

Query    1  ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGAC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCA  148
                                                       .||  ||||..|.|.|     |.|||     
Sbjct    1  -------------------------------------------ATG--TTTGGCACTGA-----ATCTT-----  19

Query  149  CAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  222
            ||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   20  CATTGAGCATGTTTTTGAACACATTAACACCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCA  93

Query  223  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   94  GGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAG  167

Query  297  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  168  CCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAG  241

Query  371  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  242  ATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATAC  315

Query  445  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  316  AATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCA  389

Query  519  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  390  GACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAA  463

Query  593  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCC  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  464  ACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCC  537

Query  667  CTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGA  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  538  CTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGA  611

Query  741  AGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACC  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  612  AGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACC  685

Query  815  GACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTG  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  686  GACGCTCTCAGCAGCTACAACATCATGGATCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTG  759

Query  889  TACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGA  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  760  TACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGA  833

Query  963  TTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTAC  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  834  TTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTAC  907

Query 1037  AAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGC  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  908  AAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGC  981

Query 1111  TACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCT  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  982  TACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGACAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCT  1055

Query 1185  GAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAAATACC  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056  GAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTGGAATTCAATCCTCATGTGCCAAAATACC  1129

Query 1259  TACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATAT  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130  TACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATAT  1203

Query 1333  GCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCAC  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204  GCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCAC  1277

Query 1407  TTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAACAGCAG  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278  TTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTATCCTTACCCAATCTGTACAGAAACAGCAG  1351

Query 1481  ACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTT  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352  ACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTT  1425

Query 1555  ACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGGGTCTT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426  ACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACACATCAGTTCCCGGAACTTATGGGGGTCTT  1499

Query 1629  CGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGACTGGAATTGC------AAGAGTATTTTCA  1696
            |||||||||            ||||  |||.||           |||....||||      || |.| ||.|||
Sbjct 1500  CGCAAAAGC------------TTTC--CTCAGC-----------ACTTTGTTTGCCCCCTTAA-ACT-TTGTCA  1546

Query 1697  TGCGTGTTGAAGATGAACTGGAAATC--CCTCCGGCACCTCAATTT----CAACATTTCCAAAAC-----  1755
            ||         ||..||.||||.|.|  |||||  ||.| ||.|.|    ||.||  .|.||.||     
Sbjct 1547  TG---------GAGAAAGTGGAGAGCATCCTCC--CATC-CAGTCTGTGGCACCA--GCTAACACGGATC  1602

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