Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07193
Subject:
NR_161418.1
Aligned Length:
2465
Identities:
1679
Gaps:
725

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTCTTACTGCTACAGCAGGGCTGGGGATTGCAGTATCCGCTGTTGCTGCTGCTCCCAGTCCTGCCCCTGCTGCT  74

Query    1  --------------------ATGGCTGAAGCGGCCACG--GGCTTTC----------TGG---------AGCAG  33
                                ||..|.||||.|| ||||  |||.|||          |||         |||||
Sbjct   75  ACCTAGTCCAGCCTCACCGCATCCCAGAAGAGG-CACGTCGGCCTTCATTTGCCTAGTGGATTTTCAAAAGCAG  147

Query   34  CTC-------------------AAG---TCCTGCAT-------------------------AGTTTG-------  53
            |||                   |||   .|.|||||                         ||.|.|       
Sbjct  148  CTCTTCGGTTTTTGGTGCTGTTAAGAGACCTTGCATTTCAATCACACCGGGAGAAAACTGAAGCTCGTAACAGG  221

Query   54  ---GTCT------TGGACGTATCTGTGGAC-----CGTGTGGTTCTTCAT----CGTGCTAT---TCCTGGTC-  105
               .|||      |||||..|.|| |||||     .||.|||  ||||||    |.||||.|   .||.|.|| 
Sbjct  222  AGAATCTGGCAGCTGGACACAGCT-TGGACTGCATTGTCTGG--CTTCATGACCCCTGCTGTGTAGCCGGCTCA  292

Query  106  ------------------TACA---TCCTGCGGGTGCC----------------------------------TT  124
                              ||||   |||| ||..|..|                                  ||
Sbjct  293  TCTCTTCACTCTCACATGTACACTCTCCT-CGCTTTTCTTTCTTTTTTTTTTCCCTTTTCTTTCTTCTAATTTT  365

Query  125  TGAAAATCAAC-------GACAAC-----TTGAGCA---------CAGTGAGCATGTTTTTGAACACATTAACA  177
            |.||||.||.|       |.||.|     ||| |||         ||.||||||||||||||||||||||||||
Sbjct  366  TAAAAAGCAGCCTCTGGAGCCAGCCATGTTTG-GCACTGAATCTTCATTGAGCATGTTTTTGAACACATTAACA  438

Query  178  CCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTA  251
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  CCGAAGTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTA  512

Query  252  TTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTG  325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  TTTTCGCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTG  586

Query  326  ACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGC  399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  ACAACAACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGC  660

Query  400  AAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGA  473
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AAAGTATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGA  734

Query  474  GCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATC  547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GCCTCTTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATC  808

Query  548  TGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCAT  621
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  TGCGTCCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCAT  882

Query  622  GAAGCCTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGAT  695
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  GAAGCCTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGAT  956

Query  696  AAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAG  769
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  AAAATTGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAG  1030

Query  770  AAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGA  843
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  AAAAATTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGA  1104

Query  844  TCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGC  917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  TCCCAGTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGC  1178

Query  918  CAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTA  991
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  CAGAAGACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTA  1252

Query  992  TGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTA  1065
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253  TGTTCAATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTA  1326

Query 1066  GCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGC  1139
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1327  GCAAAGTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGC  1400

Query 1140  TGTCTCTGACAA--------------------------------------------------------------  1151
            ||||||||||||                                                              
Sbjct 1401  TGTCTCTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAG  1474

Query 1152  --------------------------------------------------------------------------  1151
                                                                                      
Sbjct 1475  GGCCAGGGTTGTCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAG  1548

Query 1152  ATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAG  1225
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549  ATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAG  1622

Query 1226  CTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATC  1299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1623  CTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATC  1696

Query 1300  CTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGC  1373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1697  CTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGC  1770

Query 1374  TTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTAT  1447
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1771  TTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTAT  1844

Query 1448  TTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTAC  1521
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1845  TTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTAC  1918

Query 1522  CCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCT  1595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919  CCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCT  1992

Query 1596  GACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTATGATT------GACATTTTCTGCTCGGC--  1661
            |||||||||||||||||||||||||||||||||||||||||||    ||      .||.||.|.|||.|  |  
Sbjct 1993  GACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCT----TTCCTCAGCACTTTGTTTGCCC--CCT  2060

Query 1662  -AGAGT---TCAGGGACTGGAATTGCAAGAGTAT--TTTCAT---GCGTGTTG--------AAGA-TGAACTG-  1716
             |.|.|   |||.|||  |.||.|| .||||.||  |..|||   |..|||.|        ||.| .||.||| 
Sbjct 2061  TAAACTTTGTCATGGA--GAAAGTG-GAGAGCATCCTCCCATCCAGTCTGTGGCACCAGCTAACACGGATCTGA  2131

Query 1717  GA-AATCCCT------CCGGCACCTCA-------ATTTCAACATTTCC------AAAAC---------------  1755
            || ||.||||      |...|||||||       .|..||.|||.|||      ..|||               
Sbjct 2132  GAGAAGCCCTGTCCTCCACTCACCTCACCCGCCGCTGCCACCATCTCCTCTGTGCCAACTCCTTGTGGACCGCA  2205

Query 1756  --------------------------------------------------------------------------  1755
                                                                                      
Sbjct 2206  AGAAAGCATGACTTTGAAAAAGGGAAGCCATTCCGAGATTTTAAAATGTTCATGGACTATTCCATATTAAAAGC  2279

Query 1756  --------------------------------------------------------------------------  1755
                                                                                      
Sbjct 2280  TGTTTTTGTTGTACAAAATTCACTGATGTTCAGTTCTATTTTATTTTGCCTTCAGAAAAGAAGAAAGTCAAAAA  2353

Query 1756  --------------------------------------------------------------------------  1755
                                                                                      
Sbjct 2354  TAAAACTTTTGTGTATTACAGCAATCATTTGTATCCTCCTGTGTCTTCCAACCCTAAAATTGTTGATGTCCCAA  2427

Query 1756  -----------------------  1755
                                   
Sbjct 2428  ATAAACCTTTGGATTTACCTTGA  2450

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