Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07218
- Subject:
- XR_383122.3
- Aligned Length:
- 3445
- Identities:
- 1641
- Gaps:
- 1598
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCGTGTGATGATGACGTTGTACGTCCGGCGCGGGCGAGTGACGCGGCGCGGCCCGTTGTCTGTGCGGGGCTGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAGCCCTAAGGGCGGTGGGCGCTCCCGGTTGGGGGCGGCGCGGGTTTAGCAGGGCCTGGACATGGCGCTGAGAG 148
Query 1 ----------------ATGAATAAGGGCTGGCTGGAGCTGGAGAGCGACCCAGGCCTCTTCACCCTGCTCGTGG 58
|||||||||||||||||||||||||||||.||||||||||||||||||||.||.||||
Sbjct 149 GCCGCTCCGCGGGAAGATGAATAAGGGCTGGCTGGAGCTGGAGAGTGACCCAGGCCTCTTCACCCTCCTGGTGG 222
Query 59 AAGATTTCGGTGTCAAGGGGGTGCAAGTGGAGGAGATCTACGACCTTCAGAGCAAATGTCAGGGCCCTGTATAT 132
||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.|||||.|||||.|||
Sbjct 223 AAGATTTCGGTGTCAAAGGGGTGCAAGTGGAGGAGATCTATGACCTTCAGAGTAAATGCCAGGGGCCTGTGTAT 296
Query 133 GGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCCGGTCCCGGCGAAAGGTCTCTACCTTGGTGGATGATAC 206
||||||||||||||||||||||||||||||||||||.|||||||.||.|||||.|||||.|||||||||||.||
Sbjct 297 GGATTTATCTTCCTGTTCAAATGGATCGAAGAGCGCAGGTCCCGCCGCAAGGTTTCTACGTTGGTGGATGACAC 370
Query 207 GTCCGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCCCACCAGCTGATACCCAACTCTTGTGCAACTC 280
|||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||||||||.||||
Sbjct 371 GTCTGTGATTGATGATGATATTGTGAATAACATGTTCTTTGCTCACCAGCTGATTCCCAACTCTTGTGCCACTC 444
Query 281 ATGCCTTGCTGAGCGTGCTCCTGAACTGCAGCAGCGTGGACCTGGGACCCACCCTGAGTCGCATGAAGGACTTC 354
|.||||||||.||||||||.|||||||||||||..|||||.|||||.|||||.|||||.||.||||||||.|||
Sbjct 445 ACGCCTTGCTAAGCGTGCTTCTGAACTGCAGCAATGTGGATCTGGGGCCCACGCTGAGCCGAATGAAGGATTTC 518
Query 355 ACCAAGGGTTTTAGCCCTGAGAGCAAAGGATATGCGATTGGCAATGCCCCGGAGTTGGCCAAGGCCCATAATAG 428
|||||.||.||.||.||||||||||||||||||||.||||||||||||||.||..||||||||||.||||||||
Sbjct 519 ACCAAAGGCTTCAGTCCTGAGAGCAAAGGATATGCAATTGGCAATGCCCCTGAACTGGCCAAGGCACATAATAG 592
Query 429 CCATGCCAGGCCCGAGCCACGCCACCTCCCTGAGAAGCAGAATGGCCTTAGTGCAGTGCGGACCATGGAGGCGT 502
||||||||||||.||.|||||.|||||.||||||||.|||||||||||.|||||||||||||||||||||||||
Sbjct 593 CCATGCCAGGCCAGAACCACGTCACCTTCCTGAGAAACAGAATGGCCTCAGTGCAGTGCGGACCATGGAGGCGT 666
Query 503 TCCACTTTGTCAGCTATGTGCCTATCACAGGCCGGCTCTTTGAGCTGGATGGGCTGAAGGTCTACCCCATTGAC 576
|.||.||||||||||||||||||||||||||..||||||||||..|||||||..||||.||||||||.|||||.
Sbjct 667 TTCATTTTGTCAGCTATGTGCCTATCACAGGGAGGCTCTTTGAATTGGATGGATTGAAAGTCTACCCAATTGAT 740
Query 577 CATGGGCCCTGGGGGGAGGACGAGGAGTGGACAGACAAGGCCCGGCGGGTCATCATGGAGCGTATCGGCCTCGC 650
||||||||||||||.||||||||||||||||||||.||.||.||..||||||||||||||||.|||||.||.||
Sbjct 741 CATGGGCCCTGGGGAGAGGACGAGGAGTGGACAGATAAAGCTCGAAGGGTCATCATGGAGCGAATCGGTCTTGC 814
Query 651 CACTGCAGGGGAGCCCTACCACGACATCCGCTTCAACCTGATGGCAGTGGTGCCCGACCGCAGGATCAAGTATG 724
.|||||||||||||||||.||.|||||.||||||||||||||||||||||||||.|||||||||||.|||||||
Sbjct 815 TACTGCAGGGGAGCCCTATCATGACATTCGCTTCAACCTGATGGCAGTGGTGCCTGACCGCAGGATTAAGTATG 888
Query 725 AGGCCAGGCTGCATGTGCTGAAGGTGAACCGTCAGACAGTACTAGAGGCTCTGCAGCAGCTGATAAGAGTAACA 798
||.|||||||.|||||.||||||||||||||.||.|||||.||.|||||.||||||||||||||.||||||||.
Sbjct 889 AGACCAGGCTACATGTACTGAAGGTGAACCGACAAACAGTCCTGGAGGCCCTGCAGCAGCTGATTAGAGTAACC 962
Query 799 CAGCCAGAGCTGATTCAGACCCACAAGTCTCAAGAGTCACAGCTGCCTGAGGAGTCCAAGTCAGCCAGCAACAA 872
|||||.||||||||||||||||||||.|||||||||||||||||||||||||||..||||.|||||||||.|||
Sbjct 963 CAGCCGGAGCTGATTCAGACCCACAAATCTCAAGAGTCACAGCTGCCTGAGGAGAGCAAGCCAGCCAGCAGCAA 1036
Query 873 GTCCCCGCTGGTGCTGGAAGCAAACAGGGCCCCTGCAGCCTCTGAGGGCAACCACACAGATGGTGCAGAGGAGG 946
||||||.||.|..|||||.|||..|||..||||.|..|||||||||.|||..||.|||||||||||||||||||
Sbjct 1037 GTCCCCCCTTGGACTGGAGGCAGGCAGAACCCCAGTGGCCTCTGAGTGCACTCAGACAGATGGTGCAGAGGAGG 1110
Query 947 CGGCTGGTTCATGCGCACAAGCCCCATCCCACAGCCCTCCCAACAAACCCAAGCTAGTGGTGAAGCCTCCAGGC 1020
.|||||||||.|||.|||||.|..||.||||.||.|||||||.||||...|||||.|||||||||||||||||.
Sbjct 1111 TGGCTGGTTCGTGCCCACAAACTACAACCCATAGTCCTCCCAGCAAATGTAAGCTGGTGGTGAAGCCTCCAGGG 1184
Query 1021 AGCAGCCTCAATGGGGTTCACCCCAACCCCACTCCCATTGTCCAGCGGCTGCCGGCCTTTCTAGACAATCACAA 1094
|||||||||||||||||||.|||.|||||..|.||.|||||||||||||||||.|||||.||||||||||||||
Sbjct 1185 AGCAGCCTCAATGGGGTTCCCCCAAACCCTGCCCCTATTGTCCAGCGGCTGCCAGCCTTCCTAGACAATCACAA 1258
Query 1095 TTATGCCAAGTCCCCCATGCAGGAGGAAGAAGACCTGGCGGCAGGTGTGGGCCGCAGCCGAGTTCCAGTCCGCC 1168
|||||||||.|||||.|||||||||||.|||||||||||||||||.|||||.||||||||.|||||.|||||..
Sbjct 1259 TTATGCCAAATCCCCTATGCAGGAGGAGGAAGACCTGGCGGCAGGAGTGGGTCGCAGCCGCGTTCCCGTCCGAG 1332
Query 1169 CACCCCAGCAGTACTCAGATGATGAGGATGACTATGAGGATGACGAGGAGGATGACGTGCAGAACACCAACTCT 1242
|.||||||||||||||.||.||.|||||||||||.|||||| |||||.||.||||||||||||||||||.||
Sbjct 1333 CGCCCCAGCAGTACTCTGAAGACGAGGATGACTACGAGGAT---GAGGACGAGGACGTGCAGAACACCAACCCT 1403
Query 1243 GCCCTTAGGTATAAGGGGAAGGGAACAGGGAAGCCAGGGGCATTGAGCGGTTCTGCTGATGGGCAACTGTCAGT 1316
|
Sbjct 1404 G------------------------------------------------------------------------- 1404
Query 1317 GCTGCAGCCCAACACCATCAACGTCTTGGCTGAGAAGCTCAAAGAGTCCCAGAAGGACCTCTCAATTCCTCTGT 1390
|||||
Sbjct 1405 --------------CCATC------------------------------------------------------- 1409
Query 1391 CCATCAAGACTAGCAGCGGGGCTGGGAGTCCGGCTGTGGCAGTGCCCACACACTCGCAGCCCTCACCCACCCCC 1464
Sbjct 1410 -------------------------------------------------------------------------- 1409
Query 1465 AGCAATGAGAGTACAGACACGGCCTCTGAGATCGGCAGTGCTTTCAACTCGCCACTGCGCTCGCCTATCCGCTC 1538
Sbjct 1410 -------------------------------------------------------------------------- 1409
Query 1539 AGCCAACCCGACGCGGCCCTCCAGCCCTGTCACCTCCCACATCTCCAAGGTGCTTTTTGGAGAGGATGACAGCC 1612
||||||||||||||||.||||||||||
Sbjct 1410 -----------------------------------------------AGGTGCTTTTTGGAGAAGATGACAGCC 1436
Query 1613 TGCTGCGTGTTGACTGCATACGCTACAACCGTGCTGTCCGTGATCTGGGTCCTGTCATCAGCACAGGCCTGCTG 1686
|.||.||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||.|||||||||
Sbjct 1437 TACTTCGTGTTGACTGCATACGCTACAACCGTGCTGTCCGTGACCTGGGTCCTGTCATTAGCACGGGCCTGCTG 1510
Query 1687 CACCTGGCTGAGGATGGGGTGCTGAGTCCCCTGGCGCTGACAGAGGGTGGGAAGGGTTCCTCGCCCTCCATCAG 1760
|||||.|||||.|||||.||.||||||||||||||.||.|||||||||||||||||||||||.||.||.|.|||
Sbjct 1511 CACCTTGCTGAAGATGGTGTACTGAGTCCCCTGGCACTCACAGAGGGTGGGAAGGGTTCCTCACCTTCTACCAG 1584
Query 1761 ACCAATCCAAGGCAGCCAGGGGTCCAGCAGCCCAGTGGAGAAGGAGGTCGTGGAAGCCACGGACAGCAGAGAGA 1834
|.|||.|||||||||||||||||||||..|||.||.||||||||||||.|||||||.|||.||.||||||||.|
Sbjct 1585 ATCAAGCCAAGGCAGCCAGGGGTCCAGTGGCCTAGAGGAGAAGGAGGTGGTGGAAGTCACAGAGAGCAGAGACA 1658
Query 1835 AGACGGGGATGGTGAGGCCTGGCGAGCCCTTGAGTGGGGAGAAATACTCACCCAAGGAGCTGCTGGCACTGCTG 1908
||.|.|||.||...|||.|..|.||||||||||||||.|||||.||||||||||||||||||||.||||||||.
Sbjct 1659 AGCCTGGGCTGAACAGGTCCAGTGAGCCCTTGAGTGGAGAGAAGTACTCACCCAAGGAGCTGCTAGCACTGCTA 1732
Query 1909 AAGTGTGTGGAGGCTGAGATTGCAAACTATGAGGCGTGCCTCAAGGAGGAGGTAGAGAAGAGGAAGAAGTTCAA 1982
||||||||.||.||.||||||||||||||||||||.||.||||||||||||||.|||||.||||||||||||||
Sbjct 1733 AAGTGTGTAGAAGCCGAGATTGCAAACTATGAGGCCTGTCTCAAGGAGGAGGTGGAGAAAAGGAAGAAGTTCAA 1806
Query 1983 GATTGATGACCAGAGAAGGACCCACAACTACGATGAGTTCATCTGCACCTTTATCTCCATGCTGGCTCAGGAAG 2056
|||||||||||||.||||||||||||||||.||.|||||.|||||.|||||.||.|||||||||||||||||||
Sbjct 1807 GATTGATGACCAGCGAAGGACCCACAACTATGACGAGTTTATCTGTACCTTCATATCCATGCTGGCTCAGGAAG 1880
Query 2057 GCATGCTGGCCAACCTAGTGGAGCAGAACATCTCCGTGCGGCGGCGCCAAGGGGTCAGCATCGGCCGGCTCCAC 2130
|.||||||||||||||||||||.|||||||||||.|||||.||||||||||||||||||||.||.|||||.|||
Sbjct 1881 GAATGCTGGCCAACCTAGTGGAACAGAACATCTCAGTGCGCCGGCGCCAAGGGGTCAGCATTGGGCGGCTTCAC 1954
Query 2131 AAGCAGCGGAAGCCTGACCGGCGGAAACGCTCTCGCCCCTACAAGGCCAAGCGCCAG----------------- 2187
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1955 AAGCAGCGGAAGCCTGACCGGCGGAAACGCTCTCGCCCCTACAAGGCCAAACGCCAGTGAGAACCTCTGGCCCT 2028
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2029 GACTCTGCAGCCTCTCTTGCCGCAAGGCCCTCATCAGGGCCCTTCACTGTCCCTCTTTTCCAAGTATTACTGAG 2102
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2103 TAGTTCAACGAGAGCCCAGGTCCTGGGAGTGGGAGTGACATGTATTCTGCACTGTGCTCTGGGGTCTGGCAGGG 2176
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2177 ACAAGGCAGCTCCTCAATGCTCAGGAAGCAGCAGCTGGAACTGGAGGGCATCCACCATGGCCTCCACAGCCATC 2250
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2251 TGAGGAGCAGCAGGACCTGGCCTTTCTGCCTGGGCAGCAGGATGTACATTCTACCTATTGGAGATGTTTAGGTT 2324
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2325 TTGGGCTTTTGTCCATCTTGCCACTGTATTAACATGGCAGCTTCCTGACTCTGCTGTCTCTCCCAGCAGCTGTC 2398
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2399 ATTCTGCTGGGCCAGGTCTCTTAGAATACATCACAGTCCCAGCTGAGAAACACACCACCACTAGCCTGTCCTCG 2472
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2473 TTGGGAAGAAGCTTGGCCTACACTTCATTCCTCTGGGAGAGCACCAAACTCAGGGACCTGGCTGCTGAGCTGGA 2546
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2547 ATGGGCATGGGGTATCCTAATAGGATGTACAGCCTATCAGGGTCCCACGGCTATAGTGGAGACAAGTGTTTGAA 2620
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2621 CTGTCCCAGTGGCATGCAGACTGTCCTGTTAGTGAGTCAGAGCAAGGCTCTGGGGCTCTTTGCCTTCAGTGTTG 2694
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2695 TGGCCCTGGCCATGGGTCTGCCTTAGGCTCCTAATCTCTGTCTCTGGGGCCCAGGGGAGCCTCGACCTAGCCCC 2768
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2769 TCAGTATTACCATGTCTTCTCTTAGGAATATCAGAGGCAGGGCTGCTTGAATGGAGCTGGTACTATTCAATTCT 2842
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2843 CCCGACTGTGCCAGCTTCCTTGTCCTCTTGCAAGGTACTCAGGGTAGGGACAGGGTTGAGAGGAGTTAGAACTT 2916
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2917 CTGTATCCCCATAGGGCTTGGTAGTAAGTACAGCACTGCTTCAAAATCCAGCCCCCAAAAGCCCTGTACCCTCT 2990
Query 2188 -------------------------------------------------------------------------- 2187
Sbjct 2991 GCTAGATACAGGCGATCCAAGCAGGCCCCTTATCTGTACATAGTGACTGTAGGGGACCCCTCTAGTTTCTGTAA 3064
Query 2188 ----------------------------------------- 2187
Sbjct 3065 ATATTGAATCAGTGAGTGAATAAAAATGTGCTAATAAATGA 3105
