Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07233
- Subject:
- XR_375499.2
- Aligned Length:
- 3866
- Identities:
- 1304
- Gaps:
- 2372
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCCGGCTAGATAGACGAACGCCGAGAAGCTGTGGCGCATGCGCAATACCGGGGTTTCCTTGGCCGCCCACCCTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCCGAGCGGTGGAGTTGGGGATAAACAGGCAGTGGCTGGGGAGGTGAGGGAGGGGGGGCATTCGCTTTTGGGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCACCTCAGGTGCCTAGGTTTTCCTTTAGGTTTGTTCTATCCGAGACGCGGGACTCCCGGGGCCCGGCTCAAGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTTCCTGTCTGGTAAGAGAAGGTAGCTTTGGCGGAGAGCAGTTCAAGTTGCTAGGAAGGTGCGAGACTGCAGCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCCCCCATGCCGGGCAAGTGGTGCGGTCCTGAGCTTGTCCTGGAGCCTGAACAACGCCTGTGAGAAGCCCGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAACGCGGGTTCTGTGAAGAGACGTGGGGAAGATTCGATTCCGAGAAAAGGAAAAGCCGGATTGAAAGGGAGCG 444
Query 1 -----------------------------ATGGCGTCGGCCTCCTCCGGGCCGTCGTCTTCGGTCGGTTTTTCA 45
||||||||.||||||||.|||||..|| .|||.|||.||||||
Sbjct 445 AAGCCGCTGAGGGGGAGGGGGCTGCCAAGATGGCGTCCGCCTCCTCAGGGCCAGCG---GCGGCCGGGTTTTCA 515
Query 46 TCCTTTGATCCCGCGGTCCCTTCCTGTACCTTGTCCTCAGCATCTGGAATCAAGAGACCCATGGCATCTGAGGT 119
|||.|||||.|||.||.||||.|..||||| .|..||||||||||||||||||||.|||..|.||||||||.
Sbjct 516 TCCCTTGATGCCGGGGCCCCTGCTGGTACC---GCAGCAGCATCTGGAATCAAGAGAGCCACAGTATCTGAGGG 586
Query 120 GCCTTATGCCTCTGGCATGCCCATCAAGAAAATAGGCCATAGAAGTGTTGATTCCTCAGGAGAGACAACATATA 193
.||||..|||||||.||||||..|.||.||||||||||||.||||||||||||||||.||||||||.|||||.|
Sbjct 587 ACCTTCCGCCTCTGTCATGCCTGTTAAAAAAATAGGCCATCGAAGTGTTGATTCCTCTGGAGAGACTACATACA 660
Query 194 AAAAGACAACCTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATTACCCACACTGTGGGGAGCCTGAGTACC 267
|.||||||||.|||||||||||||||||||||||||||||||||||.||.|||||||||||.||||||||.|||
Sbjct 661 AGAAGACAACTTCATCAGCCTTGAAAGGTGCCATCCAGTTAGGCATCACTCACACTGTGGGCAGCCTGAGCACC 734
Query 268 AAACCAGAGCGTGATGTCCTCATGCAAGATTTCTACGTGGTTGAGAGTATCTTCTTTCCCAGTGAAGGGAGCAA 341
|||||||||||||||||||||||||||||.|||||||||||.|||||.|||||.||.|||||||||||.|||||
Sbjct 735 AAACCAGAGCGTGATGTCCTCATGCAAGACTTCTACGTGGTGGAGAGCATCTTTTTCCCCAGTGAAGGCAGCAA 808
Query 342 CCTGACCCCTGCTCATCACTACAATGACTTTCGTTTCAAGACCTATGCACCTGTTGCCTTCCGCTACTTCCGGG 415
||||||.||.|||||.||.||||||||||||||.||||||||||||||.||||||||||||||.||||||.|.|
Sbjct 809 CCTGACACCGGCTCACCATTACAATGACTTTCGATTCAAGACCTATGCGCCTGTTGCCTTCCGTTACTTCAGAG 882
Query 416 AGCTATTTGGTATCCGGCCCGATGATTACTTGTATTCCCTCTGCAGTGAGCCGCTGATTGAACTCTGTAGCTCT 489
||||.|||||.||||||||.||||||||||||||.|||||.|||||||||||..||||||||||||..|..|||
Sbjct 883 AGCTCTTTGGCATCCGGCCTGATGATTACTTGTACTCCCTTTGCAGTGAGCCATTGATTGAACTCTCCAATTCT 956
Query 490 GGAGCTAGTGGTTCCCTATTCTATGTGTCCAGCGACGATGAGTTCATTATTAAGACAGTCCAACATAAAGAGGC 563
|||||||||||||||||.||||||||||||||.||.|||||.|||||.||||||||.|||||.||||||||.||
Sbjct 957 GGAGCTAGTGGTTCCCTCTTCTATGTGTCCAGTGATGATGAATTCATCATTAAGACCGTCCAGCATAAAGAAGC 1030
Query 564 GGAATTTCTGCAGAAGCTGCTTCCAGGATACTACATGAACCTCAACCAGAACCCTCGGACTTTGCTGCCTAAAT 637
.|||||||||||||||.||||||||||||||||||||||.||.|||||.||||||||.|||||||||||.||||
Sbjct 1031 AGAATTTCTGCAGAAGTTGCTTCCAGGATACTACATGAATCTTAACCAAAACCCTCGTACTTTGCTGCCCAAAT 1104
Query 638 TCTATGGACTGTACTGTGTGCAGGCAGGTGGCAAGAACATTCGGATTGTGGTGATGAACAATCTTTTACCAAGA 711
|.||||||.|||||||||||||.|||||.|||||||||||.||.||||||||||||||||||||.||.||..|.
Sbjct 1105 TTTATGGATTGTACTGTGTGCAAGCAGGCGGCAAGAACATACGAATTGTGGTGATGAACAATCTCTTGCCTCGG 1178
Query 712 TCGGTAAAAATGCATATCAAATATGACCTCAAAGGCTCAACCTACAAACGGCGGGCTTCCCAGAAAGAGCGAGA 785
||.||.|||||||||||.|||||||||||.||.||.|||||.|||||.|||||||||||.||||||||.|||||
Sbjct 1179 TCAGTCAAAATGCATATGAAATATGACCTGAAGGGTTCAACTTACAAGCGGCGGGCTTCTCAGAAAGAACGAGA 1252
Query 786 GAAGCCTCTTCCCACATTTAAAGACCTAGACTTCTTACAAGACATCCCTGATGGTCTTTTTTTGGATGCTGACA 859
|||..||||.|||||.|||||||||||.||||||.|||||||.||||||||.||.||.||||||||||||||||
Sbjct 1253 GAAAACTCTCCCCACCTTTAAAGACCTGGACTTCCTACAAGATATCCCTGACGGCCTATTTTTGGATGCTGACA 1326
Query 860 TGTACAACGCTCTCTGTAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGATTATAGC 933
||||||..|||||.||||||||.||.|||||||||||||||||||||||||||||||||||||||||.||.|||
Sbjct 1327 TGTACAGTGCTCTGTGTAAGACTCTACAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGGACTACAGC 1400
Query 934 CTCTTGATGTCAATCCATAATATAGATCATGCACAACGAGAGCCCTTAAGCAGTGAAACACAGTACTCAGTTGA 1007
||.||||||||.|||||.||.||.||.||||||||..|.||||||...||||.|||.|||||||||||.|.|||
Sbjct 1401 CTGTTGATGTCCATCCACAACATGGACCATGCACAGAGGGAGCCCACGAGCAATGACACACAGTACTCGGCTGA 1474
Query 1008 TACTCGAAGACCGGCCCCCCAAAAGGCTCTGTATTCCACAGCCATGGAATCCATCCAGGGAGAGGCTCGACGGG 1081
.||.||.|||||.|||||.||.|||||.||.|||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 1475 CACGCGCAGACCAGCCCCACAGAAGGCGCTCTATTCCACAGCTATGGAATCCATCCAGGGCGAGGCTCGACGGG 1548
Query 1082 GTGGTACCATGGAGACTGATGACCATATGGGTGGCATCCCTGCCCGGAATAGTAAAGGGGAAAGGCTTCTGCTT 1155
|.||.||..||||||||||.|||||.|||||||||||||||||||||||||..|||||.||||||||.||||||
Sbjct 1549 GCGGCACTGTGGAGACTGAGGACCACATGGGTGGCATCCCTGCCCGGAATAACAAAGGAGAAAGGCTCCTGCTT 1622
Query 1156 TATATTGGCATCATTGACATTCTACAGTCTTACAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCCCTGGT 1229
|||||||||||||||||.|||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1623 TATATTGGCATCATTGATATTCTTCAGTCCTACAGGTTTGTTAAGAAGTTGGAGCACTCTTGGAAAGCACTGGT 1696
Query 1230 ACATGACGGAGACACTGTCTCAGTGCATCGCCCAGGCTTCTACGCTGAACGGTTCCAGCGCTTCATGTGCAACA 1303
.|||||.||.||.||.||.|||||||||||.|||||||||||.|||||.|||||||||||.|||||||||||||
Sbjct 1697 CCATGATGGGGATACGGTGTCAGTGCATCGTCCAGGCTTCTATGCTGAGCGGTTCCAGCGTTTCATGTGCAACA 1770
Query 1304 CAGTATTTAAGAAGATTCCCT----------------------------------------------------- 1324
||||.||.|||||||||||||
Sbjct 1771 CAGTGTTCAAGAAGATTCCCTGTAAGTGGCTTCTACCAGATGATCCCCCAGTGGCTCCCTTCCCCCAAGACATG 1844
Query 1325 -------------------------------------------------------------------------- 1324
Sbjct 1845 GGGGGCAAGACACCTCTGTCAGGGAGCTGCCAAGGCCAGAGGCCTCTCCTGCTCTGCCTACATCCTGTGAGCGC 1918
Query 1325 --------------------------------------------GCGTT------------------------- 1329
|||||
Sbjct 1919 TGCTTCTCGTCCTTGTGTCAGTCACTGTCTGTCCCAGTGTTTCCGCGTTGCTGCTCCCCCCTGGCTCTCCCTAC 1992
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 1993 ATGTATCGTCGAGTGAAGCCTTCTCCTACCAAAAAGTTTCGGTCTGGCCCGTCTTTCTCTCGGCGATCAGGCCC 2066
Query 1330 -------------------------------------------------------------------------- 1329
Sbjct 2067 CAGCGGCAACTCCTGCACCTCCCAGCTGATGGCCTCTGGGGAACACAGAGCACAAGTGACCACCAAGGCGGAAG 2140
Query 1330 --------------CACCTTGGTCGTCCTGATGTTTTACCTCAGACTCCACCTTTGGAGGAAATCAGTGAGGGC 1389
||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||||||.
Sbjct 2141 TGGAGCCAGATGTACACCTTGGGCGTCCTGATGTCTTACCTCAGACTCCACCTTTGGAGGAAATAAGTGAGGGT 2214
Query 1390 TCGCCTATTCCTGACCCCAGTTTCTCACCTCTAGTTGGAGAGACTTTGCAAATGCTAACTACAAGTACAACCTT 1463
||.|||.||||||.||||||||||||||||.||||||||.|..||||||||||.||||.|...|||.|||||||
Sbjct 2215 TCACCTGTTCCTGGCCCCAGTTTCTCACCTGTAGTTGGACAACCTTTGCAAATACTAAATTTGAGTTCAACCTT 2288
Query 1464 GGAAAAGCTTGAAGTTGCAGAGTCAGAGTTCACCCAT------------------------------------- 1500
||||||||||||.|||||||||||||||||||||||.
Sbjct 2289 GGAAAAGCTTGATGTTGCAGAGTCAGAGTTCACCCACTGAGCAGTGAGCCTCAGAAGACCTGAAACAAGACTCT 2362
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2363 GCTGTCGCTTTGATCCCAAGATGTCAGCCCTTGCCCCAGGAATGCTGAATCGTCTTCTTGGTCATCAACAGAGG 2436
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2437 AGAGAATGTGGAGCTAGCAGGGCTCTGACACTGTCTCCCCTTCCTCTGGGCAGTAGTGCCTTTGACAGTTGAGG 2510
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2511 ACAGCATCGTCCCCACCACTCCAGAAGTGGGTGGCGTGAATTTTCCACTGCCTGCCATGGCTTCTATAGCTGAA 2584
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2585 TATTTTTCAAACCCCCATTCTTTGTGCTGACATGGGGTTGCTGGACTGGTGGTTTCCTCCTGTTTACCTTTCTC 2658
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2659 CTGGAGCTGGACTCTTCATTTCCTCAGGACGGACTGGCTGGACATTGTTCCTGCCTTGGCTCTCCCGCTGGTCT 2732
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2733 TTGGAGACTCCCAATGATTTGTATAAAGGTGTTTGGGGGAAAGTAAGGATCATCCTTACTCCCAACCTTCTTTT 2806
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2807 CCTTAAAAAAGGAAAAAAAAAAAAAAAAAAAACACAAAGAGCACACAATGTAAATTTGAGCCAGTCTCAGATAA 2880
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2881 AAGTTCTCTAAGTGTTGTAGAAGAGCCCTAGTGTTTGTGAAGCAGAAAGGCTGGGGCTGCCCCACCAGCAGCTG 2954
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 2955 CTCTCTGACTCCCTCACTTAGGGTTGAGGGAATAGAGAGGGCCTGGCCCTTTTTTAAGACAAAGGGGCAGCCAT 3028
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3029 GTTAGGAGAGTGGACCTTAGCAGGACCCTACTCACTGCCAGGTCTTCGGTTATTACTATTCTGCAATTTGGAAT 3102
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3103 GTATCCTCATAGTTTTTTCTAGATATAAAGAATTATCAAATGATTTTAGACCATTCTCCAAAGGAGATTTCTTT 3176
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3177 GTTCTTCCTATATTTTCCAACAGTATTCTGCTCTTTGTGGAGCTACGGTGGAGGGAGATGTTTGTGTCTGTTTA 3250
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3251 ACAGGCAGTCTGTATCTATGAGGCTAGAGAATATTTTCTTAAACTCCTAGGGAGCCACAGACTTCCCTCTGTAC 3324
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3325 GGTTGTCGCCATGTCACCTGGCCTGCCCTTACTCTGCAGAGAAGCTGGAAATGGGGCCACGGAGCCCTCTCCTT 3398
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3399 CCTCTCAGTTGTGGCCCATCTGGTCCTGGCTGGTGGGGCAGTGCATGGTGTTTCAGGCTGGCTGTTGAAATCCC 3472
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3473 ACATTAGTTCCTTCCCTGTCCCGTCCCACCTTGATAGCAGGTTAGCCAACCCCCACGTAACTGTCTATATTAGA 3546
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3547 CACCCCCAGCCACCTTCTGGCTGCCTGTCTTTGCTGCCATGTTCTTTTTTACAAGAAGGAAACAAACAATTTCT 3620
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3621 TGCTATTTTTTTTTCATAATTTACTATTTATGATGTATTTAAGTGTTTTATTCAGGACAGGGTTCTGTAAGGGG 3694
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3695 TGGGAGGGAGTATTTGAGGGAGGGCTGGGACTTAGGGAAAGGACATGGGATTCAACATTTTTATGGAGTGTTAC 3768
Query 1501 -------------------------------------------------------------------------- 1500
Sbjct 3769 TATTTGCCTCTACTTTGTATTGTTGAAAAATGACAGATGCAATATAAAAGTAATAAATATCTGGTTTTAATGTA 3842
Query 1501 ------------------ 1500
Sbjct 3843 TTAAAGTTCTAGCAATCA 3860
