Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_07353
Subject:
NM_001324059.2
Aligned Length:
1717
Identities:
1489
Gaps:
224

Alignment

Query    1  ATGGCGGATTTCGAAGATTTGAGGAATATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTT  74
                                       |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ---------------------------ATGGTTTCTAGTTTTAGGGTTTCTGAACTACAAGTATTACTAGGCTT  47

Query   75  TGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   48  TGCTGGACGGAATAAAAGTGGACGCAAGCATGACCTCCTGATGAGGGCGCTGCATTTATTGAAGAGCGGCTGCA  121

Query  149  GCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTGAAGGACTTTCTGAT  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  122  GCCCTGCGGTTCAGATTAAAATCCGAGAATTGTATAGACGCCGATATCCACGAACTCTTGAAGGACTTTCTGAT  195

Query  223  TTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCACCTGTAGAACCTGACTTGGCCGTGGC  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  196  TTATCCACAATCAAATCATCGGTTTTCAGTTTGGATGGTGGCTCATCACCTGTAGAACCTGACTTGGCCGTGGC  269

Query  297  TGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCTGTGCTGCTTC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  270  TGGAATCCACTCGTTGCCTTCCACTTCAGTTACACCTCACTCACCATCCTCTCCTGTTGGTTCTGTGCTGCTTC  343

Query  371  AAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCAGTTA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  344  AAGATACTAAGCCCACATTTGAGATGCAGCAGCCATCTCCCCCAATTCCTCCTGTCCATCCTGATGTGCAGTTA  417

Query  445  AAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTAGTTCAAAGCAGTATTCAGCG  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  418  AAAAATCTGCCCTTTTATGATGTCCTTGATGTTCTCATCAAGCCCACGAGTTTAGTTCAAAGCAGTATTCAGCG  491

Query  519  ATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGGATTTTT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  492  ATTTCAAGAGAAGTTTTTTATTTTTGCTTTGACACCTCAACAAGTTAGAGAGATATGCATATCCAGGGATTTTT  565

Query  593  TGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGCCCTCAA  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  566  TGCCAGGTGGTAGGAGAGATTATACAGTCCAAGTTCAGTTGAGACTTTGCCTGGCAGAGACAAGTTGCCCTCAA  639

Query  667  GAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGCACCACC  740
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  640  GAAGATAACTATCCAAATAGTCTATGTATAAAAGTAAATGGGAAGCTATTTCCTTTGCCTGGCTATGCACCACC  713

Query  741  GCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTATCTTCAG  814
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  714  GCCTAAAAATGGGATTGAACAGAAGCGCCCTGGACGCCCCTTGAATATTACATCTTTAGTTAGGTTATCTTCAG  787

Query  815  CTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATATCTTGTA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  788  CTGTGCCAAACCAAATTTCCATTTCTTGGGCATCAGAAATTGGGAAGAATTACTCTATGTCTGTATATCTTGTA  861

Query  889  CGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTCCAGAGC  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  862  CGGCAGCTTACATCAGCCATGTTATTACAGAGATTAAAAATGAAAGGTATTAGAAACCCTGATCATTCCAGAGC  935

Query  963  ACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCTTGATGT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  936  ACTAATTAAAGAAAAACTTACTGCAGATCCTGATAGTGAAATTGCTACAACTAGCCTTCGGGTATCCTTGATGT  1009

Query 1037  GCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTTGATGCT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010  GCCCTTTAGGAAAAATGAGGCTGACAATCCCATGCCGTGCAGTGACTTGTACACATCTGCAGTGTTTTGATGCT  1083

Query 1111  GCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGCCTATGA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084  GCCCTCTATCTACAAATGAATGAGAAAAAGCCCACCTGGATTTGTCCTGTGTGTGACAAAAAAGCTGCCTATGA  1157

Query 1185  AAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAATTCCAAG  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1158  AAGTCTAATATTAGATGGGCTTTTTATGGAAATTCTCAATGACTGTTCTGATGTAGATGAGATCAAATTCCAAG  1231

Query 1259  AAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACAAAAATA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232  AAGATGGTTCTTGGTGTCCAATGAGACCGAAGAAAGAAGCTATGAAAGTATCCAGCCAACCGTGTACAAAAATA  1305

Query 1333  GAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGTAGATGT  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306  GAAAGTTCAAGCGTCCTCAGTAAGCCTTGTTCAGTGACTGTAGCCAGTGAGGCAAGCAAGAAGAAAGTAGATGT  1379

Query 1407  TATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCTTTATGT  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380  TATTGATCTTACAATAGAAAGCTCTTCTGACGAAGAGGAAGACCCTCCTGCCAAAAGGAAATGCATCTTTATGT  1453

Query 1481  CAGAAACACAAAGCAGCCCAACCAAAGGGGTT-CTCATGTATCAGCCATCTTCTGTAAGGGTGCCCAGTGTGAC  1553
            |||||||||||||||||||||||||||||.|| .|.||.||                                 
Sbjct 1454  CAGAAACACAAAGCAGCCCAACCAAAGGGTTTGTTAATTTA---------------------------------  1494

Query 1554  TTCGGTTGATCCTGCTGCTATTCCGCCTTCATTAACAGACTACTCAGTACCATTCCACCATACGCCAATATCAA  1627
                                                                                      
Sbjct 1495  --------------------------------------------------------------------------  1494

Query 1628  GCATGTCATCAGATTTGCCAGGAGAACAAAGAAGAAATGATATTAATAATGAACTGAAGCTTGGAACATCTTCT  1701
                                                                                      
Sbjct 1495  --------------------------------------------------------------------------  1494

Query 1702  GATACTGTGCAACAG  1716
                           
Sbjct 1495  ---------------  1494

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