Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07503
- Subject:
- NM_001252638.1
- Aligned Length:
- 2102
- Identities:
- 1438
- Gaps:
- 391
Alignment
Query 1 ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTGACAATGCCGT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTGGCCACCCACG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGATGTTGTTGAT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTGCATATGGCAG 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 GTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGCATGTGGTATC 370
||||||||||
Sbjct 1 ----------------------------------------------------------------ATGTGGTATC 10
Query 371 CAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCGCTATGCCGAC 444
.|||||||||||||||||||||||||||.|||||..||||.|||||.||||||||.||.||||||||.||||||
Sbjct 11 AAGAAATCAAGCACTTTTGCCCTCGAACGCCCGTCGTCCTGGTTGGCTGCCAGCTAGACCTCCGCTACGCCGAC 84
Query 445 CTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGCCCCCAGAAAA 518
|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||.||.|||||||||||||||||
Sbjct 85 CTGGAGGCTGTTAACCGGGCCAGACGCCCCTTAGCAAGGCCCATAAAGAGAGGTGACATTTTGCCCCCAGAAAA 158
Query 519 AGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTTGGTATCAAGG 592
||||||.|||||.||.||||||||||||.|.||.|||||.||.||.||||||||||||||||||||.|||||||
Sbjct 159 AGGCCGCGAGGTGGCGAAGGAACTTGGCATCCCGTACTACGAGACCAGCGTGTTTGACCAGTTTGGCATCAAGG 232
Query 593 ATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATCCCACCTAAAG 666
|.|||||.||||||||.|||||||||||.||.||.||||||.||||||||||.|||||||||||||||.|.||.
Sbjct 233 ACGTGTTCGACAATGCCATCCGAGCAGCCCTCATCTCCCGCCGGCACCTGCAGTTCTGGAAATCCCACTTGAAA 306
Query 667 AAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCAAAATTCCAGA 740
|||||||||||.|||.|.||||||||.||||||||||||||.|||||.|||||.|||||||||||..|.||.||
Sbjct 307 AAAGTCCAGAAGCCTCTGCTTCAGGCGCCCTTCCTACCTCCGAAAGCTCCTCCCCCGGTCATCAAGGTCCCCGA 380
Query 741 GTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTTCTGTTCATCC 814
||||||.||...||||||.|..||.||||||||||||||||||||.||.||.||.|||||.||.||.|||.|.|
Sbjct 381 GTGTCCGTCTGCGGGGACCAGCGATGCTGCCTGTTTACTGGACAACCCCCTGTGCGCCGACGTCCTCTTCGTTC 454
Query 815 TTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTATGATCTGTTT 888
|.||.|||.||||.|||||||||||.||.||.|||||||||||||||||||||||||||||.||.||.||.|||
Sbjct 455 TCCATGACGAGGAGCACATCTTTGCGCACCGCATTTACCTCGCTACCTCTTCTTCCAAATTCTACGACCTTTTT 528
Query 889 TTAATGGAATGTGAAGAATCCCCAAACGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCAGAGATTTCCA 962
||||||||.||||||||||||||.....||.|||.||||||..||||| |||..||.|.||||.|||||.||
Sbjct 529 TTAATGGAGTGTGAAGAATCCCCTTGTTGGGGTGGAGGAGCTGGTGAG---GAGGTGCCGTGCAGGGATTTTCA 599
Query 963 GGGGCGGATATTGAGTGTCG----ACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAGGCCGA- 1031
||||||||....||||.|.| |.|| ||||||| ||.||||||||||.|..||||..||||||||.||
Sbjct 600 GGGGCGGACGCAGAGTCTTGGATCAGCC-GAGGAAG---GGAAGGAGGGCCCCCAGAGGACCCCTCAGGCTGAC 669
Query 1032 CCAGTGGA-AGTCTTCAAACAAGAGCCTGGTGGA------GGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCT 1098
||| ||| .|||||||..|.||..||||...|| ||||.||..|.||||||||..|| |||||
Sbjct 670 CCA--GGAGCGTCTTCAGGCCAGGACCTGCCTGAGAGTTTGGCTTTGCAGATGGAAGCCTCGG-----GTTCC- 735
Query 1099 GAGACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTC 1172
|||..|||..|..||.||||.|||||.||||||||..|..|||||||||||||..|||..||||||||||||||
Sbjct 736 GAGGGACACGCCCTGTCCGGCTGGAGCAAGGGGTTTGTCAGCATGCACAGGGAGGTGCGGGTCAACCCCATTTC 809
Query 1173 AAAGCGGATGGGGCCCA-TGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTC 1245
.||||||.| ||||||| ||||.|||||||||.|||||.|.||..|.|||.||||||||||.|||||||||||
Sbjct 810 CAAGCGGGT-GGGCCCAGTGACCGTGGTCAGGCTGGACCCATCGATGCAGTCAGGCCCTTTCCGGACCCTGCT- 881
Query 1246 CAG-TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCC 1318
.|| ||.||.||..|.||.||.|||||.|||||||||||.|||.||.||||.|||||||||||.||.|||||||
Sbjct 882 GAGATTCCTCTACTCTGGGCAGCTGGACGAAAAGGAAAAAGATCTGCTGGGGCTGGCTCAGATGGCCGAGGTCC 955
Query 1319 TCGAGATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACG 1392
|.||||||||.|||.|||||||||||||.||.||.||||||||||||||.||.||.||||||||||||||.|||
Sbjct 956 TGGAGATGTTTGATCTGAGGATGATGGTAGAGAATATCATGAACAAGGAGGCTTTTATGAACCAGGAGATCACG 1029
Query 1393 AAAGCCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATT 1466
||||||||.|||||..||||||||||||||||.|||||.||||||||||||||.||.|||||.|||||||||||
Sbjct 1030 AAAGCCTTCCACGTCCGGAAAGCCAATCGGATCAAAGAATGTCTCAGCAAGGGCACCTTCTCAGACGTGACATT 1103
Query 1467 TAAATTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGT 1540
||..|||||.||.|||||||||||.|||||||||||||||||||||||||||||.||.||||||||.|||||||
Sbjct 1104 TACCTTGGATGACGGAGCCATCAGCGCCCACAAGCCGCTGCTGATCTGTAGCTGCGAATGGATGGCGGCCATGT 1177
Query 1541 TCGGGGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCA 1614
|||||||.||.|||||||||||.||||||.|||||||..|.|||||.||.|||||||||||.||.|||||.||.
Sbjct 1178 TCGGGGGTTCCTTTGTGGAAAGCGCCAACCGTGAGGTTCACCTCCCAAATATAAACAAGATGTCGATGCAGGCG 1251
Query 1615 GTATTGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGC 1688
||.|||||.||.|||||.||||||||||||||.||.||||||||.||||||||.|||||.||||||||||||||
Sbjct 1252 GTGTTGGAATACCTCTACACCAAGCAGTTGTCACCCAACTTGGACCTGGACCCCCTGGAGTTAATTGCCTTGGC 1325
Query 1689 AAACAGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCA 1762
||||||||||||||||.|||||||||||||.||.|.|||.||||||||.||.||||||.|.|||||.|||||..
Sbjct 1326 AAACAGATTTTGCCTGACACACTTGGTTGCTCTCGTAGAGCAGCATGCTGTCCAGGAGCTCACCAAGGCCGCTG 1399
Query 1763 CGAGTGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTG 1836
..|||||.|||.||||.||.||.|||||.|||||.||||||||..||||.|||||||||||||||.|.|||.|.
Sbjct 1400 TCAGTGGTGTGAGCATCGATGGTGAAGTTCTCTCCTACTTGGAGCTGGCACAGTTTCACAATGCCAATCAGCTA 1473
Query 1837 GCCGCCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATC 1910
||.||||||||||||||.|||||||||||||||||||||||.||.||.|||||||||||.||||||||||||||
Sbjct 1474 GCTGCCTGGTGTTTGCATCACATCTGCACCAACTACAACAGCGTCTGTTCCAAGTTCCGCAAGGAAATCAAATC 1547
Query 1911 AAAATCTGCAGACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATC 1984
.||.||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||.|||||.|
Sbjct 1548 CAAGTCAGCAGACAACCAGGAGTACTTTGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAGGAAGACC 1621
Query 1985 ACTACCAGCGTGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGG 2058
||||||||||||||||.||||||||||||||.||.||..|.||.||.||.|||||.|..|||||..||||||||
Sbjct 1622 ACTACCAGCGTGTGAAGAGGGAACGAGAGAAAGAGGACCTGGCGCTGAACAAGCACCATTCAAGGAGAAAGTGG 1695
Query 2059 TGCTTCTGGAATTCATCTCCAGCAGTGGCC 2088
||.||||||.||||.||.|||||.||.|||
Sbjct 1696 TGTTTCTGGCATTCGTCCCCAGCTGTCGCC 1725