Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07503
- Subject:
- XR_945894.2
- Aligned Length:
- 4509
- Identities:
- 2087
- Gaps:
- 2421
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAAAGCCCGCGCCAGCCTCGGCCGCCCGGCGGGACCCAGAGCCGCCGCGGGAGCTTCCAGCGTCCCCAGGTTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TATAATAATCAAGAAGCACATGAAAGAGGCCTCTTCATCAAGCATTCTTGACTAAGTTATGAAAATGGAATTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AGTTTATTTTCCCCCTTCATATGGTAAGTCCAGCTGTGAGCAGAGTGTTCTGTTCTTCACTTCCAGCAAGCCAG 222
Query 1 ----------ATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTG 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGTTTCATAAATGGACGCTGACATGGACTACGAAAGACCCAACGTTGAAACTATCAAATGTGTGGTCGTGGGTG 296
Query 65 ACAATGCCGTGGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTG 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAATGCCGTGGGGAAGACGCGCTTGATCTGTGCCAGGGCGTGCAACACCACACTCACGCAGTATCAGCTGCTG 370
Query 139 GCCACCCACGTGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGA 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GCCACCCACGTGCCAACAGTGTGGGCGATTGACCAGTACCGCGTGTGCCAGGAGGTCTTGGAGCGTTCTCGGGA 444
Query 213 TGTTGTTGATGAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTG 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTTGTTGATGAAGTGAGTGTTTCTCTCAGGCTTTGGGATACTTTTGGTGATCATCACAAAGACAGACGCTTTG 518
Query 287 CATATGGCAGGTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CATATGGCAGGTCTGATGTTGTGGTCCTCTGTTTTTCGATTGCTAATCCCAATTCCCTAAATCATGTGAAAAGC 592
Query 361 ATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGTGGTATCCAGAAATCAAGCACTTTTGCCCTCGAACACCCGTTATCCTTGTTGGGTGCCAGCTTGATCTCCG 666
Query 435 CTATGCCGACCTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGC 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTATGCCGACCTGGAAGCTGTTAATCGAGCCAGGCGCCCGTTAGCAAGGCCCATAAAGAGAGGGGATATTTTGC 740
Query 509 CCCCAGAAAAAGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CCCCAGAAAAAGGCCGAGAGGTAGCAAAGGAACTTGGCTTACCATACTATGAAACAAGCGTGTTTGACCAGTTT 814
Query 583 GGTATCAAGGATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATC 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GGTATCAAGGATGTGTTTGACAATGCAATCCGAGCAGCGCTGATTTCCCGCAGGCACCTGCAATTCTGGAAATC 888
Query 657 CCACCTAAAGAAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCA 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CCACCTAAAGAAAGTCCAGAAACCTTTACTTCAGGCACCCTTCCTACCTCCAAAAGCCCCTCCACCGGTCATCA 962
Query 731 AAATTCCAGAGTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTT 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAATTCCAGAGTGTCCTTCCATGGGGACAAATGAAGCTGCCTGTTTACTGGACAATCCTCTATGTGCCGATGTT 1036
Query 805 CTGTTCATCCTTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTGTTCATCCTTCAGGACCAGGAACACATCTTTGCACATCGAATTTACCTCGCTACCTCTTCTTCCAAATTTTA 1110
Query 879 TGATCTGTTTTTAATGGAATGTGAAGAATCCCCAAACGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCA 952
||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGATCTGTTTTTAATGGAATGTGAAGAATCCCCAAATGGGAGTGAAGGAGCCTGTGAGAAAGAGAAGCAGAGCA 1184
Query 953 GAGATTTCCAGGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAG 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GAGATTTCCAGGGGCGGATATTGAGTGTCGACCCAGAGGAAGAAAGGGAGGAGGGCCCGCCTAGGATTCCTCAG 1258
Query 1027 GCCGACCAGTGGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGA 1100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCGACCAGTGGAAGTCTTCAAACAAGAGCCTGGTGGAGGCTCTGGGGCTGGAAGCCGAGGGTGCAGTTCCTGA 1332
Query 1101 GACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAA 1174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GACACAGACTTTGACCGGATGGAGTAAGGGGTTCATTGGCATGCACAGGGAAATGCAAGTCAACCCCATTTCAA 1406
Query 1175 AGCGGATGGGGCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAG 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AGCGGATGGGGCCCATGACTGTGGTCAGGATGGACGCTTCAGTCCAGCCAGGCCCTTTTCGGACCCTGCTCCAG 1480
Query 1249 TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTTCTTTATACGGGACAACTGGATGAAAAGGAAAAGGATTTGGTGGGCCTGGCTCAGATCGCAGAGGTCCTCGA 1554
Query 1323 GATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAG 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GATGTTCGATTTGAGGATGATGGTGGAAAACATCATGAACAAGGAAGCCTTCATGAACCAGGAGATTACGAAAG 1628
Query 1397 CCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAA 1470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CCTTTCACGTAAGGAAAGCCAATCGGATAAAAGAGTGTCTCAGCAAGGGAACGTTCTCGGACGTGACATTTAAA 1702
Query 1471 TTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGG 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TTGGACGATGGAGCCATCAGTGCCCACAAGCCGCTGCTGATCTGTAGCTGTGAGTGGATGGCAGCCATGTTCGG 1776
Query 1545 GGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTAT 1618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGGGTCATTTGTGGAAAGTGCCAACAGTGAGGTGTATCTCCCGAACATAAACAAGATATCAATGCAAGCAGTAT 1850
Query 1619 TGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAAC 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 TGGATTATCTCTATACCAAGCAGTTGTCTCCTAACTTGGATCTGGACCCGCTGGAATTAATTGCCTTGGCAAAC 1924
Query 1693 AGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAG 1766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 AGATTTTGCCTGCCACACTTGGTTGCACTTGCAGAACAGCATGCCGTTCAGGAGTTGACCAAAGCCGCCACGAG 1998
Query 1767 TGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCG 1840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 TGGCGTGGGCATTGACGGAGAAGTGCTCTCTTACTTGGAATTGGCTCAGTTTCACAATGCCCACCAGTTGGCCG 2072
Query 1841 CCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAA 1914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073 CCTGGTGTTTGCACCACATCTGCACCAACTACAACAGTGTATGCTCCAAGTTCCGTAAGGAAATCAAATCAAAA 2146
Query 1915 TCTGCAG------------------------------------------------------------------- 1921
|||||||
Sbjct 2147 TCTGCAGGTGAGACTGTGTGAGGCCCCCATTCATCCAGCTCTCCTCACCTCTCATGGAAGCTTTTATCTTCTAT 2220
Query 1922 -------------------------------------------------------------------------- 1921
Sbjct 2221 GTCCCTGGAAAGGAACATGGTCAGCAGGCAGCTCATGGATGATTCCTCGAGACTGGCTGGTGGTCACATATTAA 2294
Query 1922 -ACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCG 1994
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 TACAACCAGGAATACTTCGAGCGGCACCGCTGGCCCCCTGTGTGGTACCTGAAGGAAGAAGATCACTACCAGCG 2368
Query 1995 TGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGA 2068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 TGTGAAAAGGGAACGAGAGAAGGAAGATATTGCACTAAATAAGCATCGCTCAAGACGAAAGTGGTGCTTCTGGA 2442
Query 2069 ATTCATCTCCAGCAGTGGCC------------------------------------------------------ 2088
||||||||||||||||||||
Sbjct 2443 ATTCATCTCCAGCAGTGGCCTGAAGAGGAAGAGAAAAAAAACAAAAAACAGAAACCAATCGGTAATCTGATCCA 2516
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2517 CCACTTTTCAAAGCACTACTATAAAATTCGTCTTGTTAGAGATACGACATAGTTCAGGTTTCGGGCACTGATCT 2590
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2591 TCCTCCACTTTTGTGCATTTATCTTTGTTAGGATCAAAGCACAAGCTCACCATCAATGAGCCTGGACAAAAAGG 2664
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2665 GAAGCTGACTCTCACTGCATTCCTTAAACTGATATGTATATTTTTTTTGTTAGGAGGCTTAATAAACTTTAGTC 2738
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2739 TGTTATTTTGTTTCTTTTTATACAAAGAAAAAAAATTCAGCTTTCATGTTTCTGATTCCAGATTGGAAAATATT 2812
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2813 TTTATATGGTCTGTTGTATTTTGTTGAAATGAAAATACTGTGTATTACTTTATTTTACAGGCCACAATTGATTA 2886
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2887 TGAAGTCACCCTGTGATTCTCTTTGCCCACATGACCACCGAGCATTATTACGTAATTAGAGGGTTATCCTTTTG 2960
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 2961 TTGTGAAAGGAAGGAGGGGACTGAAATCTCCCAAAGTGCAAATTGGAGAGTGTTTAATCTTTGTTCTGTTGAAT 3034
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3035 AACATCGGTGTAATTACAAAGTCAACTCCAAGAATGTGTATTTACAATATTTGCCATGTTAAGTGCTGGTAATT 3108
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3109 ATATGGTTATATGTGCCATGTAAAATATAGTGATATCAAATATTCTGTTGTTTCCAATGTCTAGTTTCAAGAGG 3182
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3183 ACAATCTTTATAATCATTAGAAGGGCTTATTAAATCCCAGCATTATCCAGGGCAAACTCACTGGTGGACCTGAA 3256
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3257 TACATAAGATACCATTAGTGCGCTGGTGTTCGGATTGCTGTATTAGGGTTTACATCTCTCAGTATTCCTTGAAC 3330
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3331 TTGCCATGCTTCTGCATGCAGATTCTTCACTGACTTGAATTGAGATGGGCAAGGGAAAAGGTCCCTGGACTCCC 3404
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3405 TCCTGCCATCTACAGGCTTGTCACATCTCACCACCAGAAACAGGCTTCCTCAGGCTTCTCACCTGTGGCCAACT 3478
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3479 TCACTTTGTAAGACCCATATTTTTAACTCTTCCCAGGGAAAATTCATGTTGCTGCAGAAGTAGGCTAAGGCAGA 3552
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3553 CCACCCACTTCTGCTGAAATGCATTGGGAGCCTGTGAAAGCACAAAGCTGGAGGCTGGGCGCCTGCGTTCTCCT 3626
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3627 ACACGGAAAGGAATCTAATTCCAAGAGTCTAGGAAATGGTGCTATTGTGAGTTCGTTCTGACTCTTTCTCATTC 3700
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3701 TGAGTTTTCAGTGTTAAACTAGGAAGTGTGACAGCAGGGGAGCTTTCGTGAGGCAGTCAGTCATTGCTTCTCTG 3774
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3775 TAAATTAAAATGTTACAGCACACACATACACACACAGAGAGCATTTCAAGGCCACAGCTCCACACCTGCCATGG 3848
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3849 GATGTTAATGTGGCAGGGGGTGGGGCTCATTCTGTTGGGAGGTCAAATTACCAATGCCAAGGACTGTTGATTTT 3922
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3923 GTTTTTATTTTTATTTTTTCTTCTAGCTTTTCAGAAGATGGAAATGAGACAGTTGAGTCCAAACCCCAATGCTG 3996
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 3997 ACAGCCATATGCATTTGAAAATCTATCTAGATTACAGATGGGCATTTATTACTGGCAGTGGAAACACCAGATAG 4070
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 4071 AAGATCTTAGGAGAGGCCCAGAAATGCATCACCTTGTCATGACAAAAGAGAAGGCAGTAGAGTAGGGATAGTTA 4144
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 4145 CAAATGCATCCATCTTAATTATTTTCAATAGGCTTGTAAATCTTATCGATGGAAGGAGAAAGGAGACAAGATGT 4218
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 4219 GGAAGAATTGACATGTATCCCACCATAAAATGGTAGAAGATGAGTTTTCAATGAGTAGTCATAGTTGAAATTTT 4292
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 4293 ACAACCAAAGCTCCCATTTGATTGTAATCTTGCCAAAATATAATGGATGTATAAATGAACTTGGGGTATAAGCA 4366
Query 2089 -------------------------------------------------------------------------- 2088
Sbjct 4367 ATAATATCCACTAGTGTTGTTATCAGCTACTGTAACCAAGTGGCTGGTTCATTTGGTTGATGCTGATTATGGCC 4440
Query 2089 --------------------------------------------------------------------- 2088
Sbjct 4441 TTTAACCATGGTGGTTTGTTGTGTGTTTTTTATTTCACAAAAAGCCAATAAAATTGTTTAGCTATAAAA 4509