Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_07510
• Subject: XR_944849.3
• Aligned Length: 3849
• Identities: 2432
• Gaps: 1416

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGAGACACTAGTCCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCGGCCGGCGGGGCTCGCGCAACCTCCCTCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGCCGGGCTTAACAGCCCCGTCCGCCGCTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAACCGCTGCCGCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCG  444

Query    1  ---------------ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGAGGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  518

Query   60  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  592

Query  134  CCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTT  207
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCGGCGAGTCTAAACCCAAGAGCGATGGAAAGAACTCCAGTGGATCCAAGCGTTATAATCGCAAACGTGAACTT  666

Query  208  TCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAACAA  281
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAGTTCACAGAAAAGCAAGACTTTTAACAA  740

Query  282  GATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGG  355
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTTCTTTTAATGGTGGAAGACGAGATGAGG  814

Query  356  TAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGTCCTAAGAAGATCAACCTGAACCACTTG  429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGTCCTAAGAAGATCAACCTGAACCACTTG  888

Query  430  TTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGGCAGTGGACATGGTAGCTGGGGAAAGAG  503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGGCAGTGGACATGGTAGCTGGGGAAAGAG  962

Query  504  GAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGGCCAACTGCCAATTTGTGGTGTCTGAAG  577
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGGCCAACTGCCAATTTGTGGTGTCTGAAG  1036

Query  578  ACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAACTGGGACTTTGTGGAACAAGTGCGCATT  651
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  ACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAACTGGGACTTTGTGGAACAAGTGCGCATT  1110

Query  652  TGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTGCAGCCAAGATAACCCGTTGTGGACA  725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTACTGCAGCCAAGATAACCCGTTGTGGACA  1184

Query  726  CATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGAAGACGTGGAGTAAATGTCCCATCTGTT  799
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  CATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGAAGACGTGGAGTAAATGTCCCATCTGTT  1258

Query  800  ACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAGTCACATCAGTATGTTGTTGGTGATACC  873
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAGTCACATCAGTATGTTGTTGGTGATACC  1332

Query  874  ATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGA  947
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  ATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTTGCCCAAATCCAAATGGATGAATGTAGA  1406

Query  948  CCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGTTTCTGCTGGCCTCTAAGGAGCAGGTGC  1021
            ||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 1407  CCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGTTGCTGCTGGCCTCTAAGGAGCAGGTGC  1480

Query 1022  TGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCCGAGTCC  1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTGGCAGAGGAGAAGCACACTCCCGAGTCC  1554

Query 1096  TGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGCTCTGTCGGGATTGGCCGGAAGCAGAAG  1169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGCTCTGTCGGGATTGGCCGGAAGCAGAAG  1628

Query 1170  GGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGGCTCCCTTGGCGAAGGAGTCTGTTTTTC  1243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGGCTCCCTTGGCGAAGGAGTCTGTTTTTC  1702

Query 1244  AACCCAGGA---------------AGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAAACCACGGAAGTT  1302
            |||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  AACCCAGGAAGAGTTTGCTGCAACAGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAAACCACGGAAGTT  1776

Query 1303  TGTTCTCTGGACACTCCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGTGTCTGAACCAGA  1376
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  TGTTCTCTGGACACTCCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGTGTCTGAACCAGA  1850

Query 1377  GCCTGAGGGGTTGCCAGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGGGGACCATTTGCA  1450
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  GCCTGAGGGGTTGCCAGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGGGGACCATTTGCA  1924

Query 1451  CTGAGTCCAGCCAGCAGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTT  1524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CTGAGTCCAGCCAGCAGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCTTGTTACTACTTT  1998

Query 1525  TACCAAGCGGAAGATGGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCGGGAGTACGGCAG  1598
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  TACCAAGCGGAAGATGGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCGGGAGTACGGCAG  2072

Query 1599  CCTGGAGAGGAGCCCCGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGTCTGAGGATGTTC  1672
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CCTGGAGAGGAGCCCCGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGTCTGAGGATGTTC  2146

Query 1673  GACAGCGTCACAGATATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTGGCTTTGCAACCT  1746
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GACAGCGTCACAGATATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTGGCTTTGCAACCT  2220

Query 1747  CCTGTGGTCTCTAAGGAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCAGCGCCAAAAGAA  1820
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CCTGTGGTCTCTAAGGAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCAGCGCCAAAAGAA  2294

Query 1821  GGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCAAGTACCCAGAAG  1894
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCAAGTACCCAGAAG  2368

Query 1895  TCCACATTCCCCTCGAGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCTGATTCTGCTTTG  1968
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  TCCACATTCCCCTCGAGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCTGATTCTGCTTTG  2442

Query 1969  GGTCCCACCAGCACCGAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGGTTCCCATG----  2038
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct 2443  GGTCCCACCAGCACCGAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGGTTCCCATGCAGG  2516

Query 2039  ---------------CAGACTTTCTGCTGACCCCTCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGC  2097
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TCTCTGGTTCCCTTTCAGACTTTCTGCTGACCCCTCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGC  2590

Query 2098  GTTGGGAGTCTGGAAGAAGACTCTCCCTTCCCTTCCTTTGCCCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGA  2171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  GTTGGGAGTCTGGAAGAAGACTCTCCCTTCCCTTCCTTTGCCCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGA  2664

Query 2172  TGTGTGGCCCAAAACTGCTCCAAAGAAAGATGAGAACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGG  2245
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  TGTGTGGCCCAAAACTGCTCCAAAGAAAGATGAGAACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGG  2738

Query 2246  AGAGTGATAATTCAGACCGTGTTCCTGTGCCCAGTTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTC  2319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  AGAGTGATAATTCAGACCGTGTTCCTGTGCCCAGTTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTC  2812

Query 2320  ATGAAACTGGACACACCAGCTACTTCAGATCCCCTCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAA  2393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  ATGAAACTGGACACACCAGCTACTTCAGATCCCCTCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAA  2886

Query 2394  ACAGAAGCTCCTGTTCAGCACCTCAGTCGTCCACACCAAG----------------------------------  2433
            ||||||||||||||||||||||||||||||||||||||||                                  
Sbjct 2887  ACAGAAGCTCCTGTTCAGCACCTCAGTCGTCCACACCAAGTGACACTACTGGCCCAGGCTACCTTCTCCATCTG  2960

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 2961  GTTTTTGTTTTTGTTTTTTTTTCCCCCATGCTTTTGTTTGGCTGCTGTAATTTTTAAGTATTTGAGTTTGAACA  3034

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3035  GATTAGCTCTGGGGGGAGGGGGTTTCCACAATGTGAGGGGGAACCAAGAAAATTTTAAATACAGTGTATTTTCC  3108

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3109  AGCTTCCTGTCTTTACACCAAAATAAAGTATTGACACAAGAGATCTCTTCCTGCCAAGGTTTTTAGTTCATTGC  3182

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3183  CAGTTTAGTCTTTTTGACCCATGTGTAATTAATTTTTCTCAACCCAAAGTAAGATTGAGTCCCCTTTGAGATGC  3256

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3257  ATTAGAGCAGTCCAACCCAGAATGGCACACACTGCTCTGCTGTAGCATCATGTCAGGGCTTCCTGGACTCAGTA  3330

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3331  CACCTCTCAGTTTGTCTTTTAAAAAACAGCTGAATCTTTACTACCTATTTAGTTCTCCTTGTTAAAGAAACAGG  3404

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3405  GGTGGGAATAAAATGGATTTAGGACACCCAGTTTGAATTGCAGTTTTTTTTTTTCTGACACATGGCCAGGCTGT  3478

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3479  GGTGCCAGCTTAATGGAGTAGGCTGTCCTTGGCACTTGCATGTGTGAAAGGAGGGTTTTGCCTCTTCTTGAGCA  3552

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3553  TGGCTTGAGTTGGTAAGGAAAGCTGTAACTCACGAAGCCCTGAGACCTGCTACCCCTAAGATCGAGCTTGTTTT  3626

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3627  CAGTGACTGGCTTGAGTCATAGGAGGAGGAGTCTGGTACAGCTGCAGGAGAGCAGGGCCATCTGAAGCGGTAGC  3700

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3701  ATTGCCACCATCTCCCTCTCATCTAGAGCAGTTTTCTTATGCCTTGGTTTGAGCTGAATTTGATGTGAATTCTT  3774

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3775  TTGCTGCTTAATAAAGTGACCTCTAGGTGCATTAGAATGCGAAGGCAAATAGTTGCAATAAATCACCTGCACAA  3848

Query 2434  -  2433
             
Sbjct 3849  G  3849