Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07561
- Subject:
- NR_135140.1
- Aligned Length:
- 4490
- Identities:
- 611
- Gaps:
- 3878
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGCAGGAGTTTCCCCGACAGCTGGAGGCTGCGTGGGATCCGGCGGCGGCTCCCGAGCGCGGCGGTGCGGCCTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCGCCCCCTCCCTCCCTCCTCCCCCGCCCGCTTCCGCCCGGCTTATTATCCTCCTTATTGACAAACAGAGCG 148
Query 1 ----------------------------------------ATGGGAGACAAGAAGAGCCCCACCAGGCCGAAGC 34
||||||||||||||||||||||||||||||||||
Sbjct 149 GTCGCGGCGGCGACTCTCGGCGTGCGGTGATAGCCAAGCCATGGGAGACAAGAAGAGCCCCACCAGGCCGAAGC 222
Query 35 GGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCC 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGTCTGCACCTTCCGGAACAGCGCCGAGGCC 296
Query 109 TTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCC------------------------------- 151
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGAATGAAGAATCATGAAATCATAAGTTTCTT 370
Query 152 -----------------------------------------------------------------------GAT 154
|||
Sbjct 371 GAAGGAAGGAGAGAAGAAAAAGCTGGATCACTTACCAGTAACTGGAGTTCTCCTATTGGGTAATCTCCACAGAT 444
Query 155 CCACATTGTTTGAAGTTATTGTGAGTGCCTCGAGGACCAAGGAACCGTTGAAATTTCCAATTTCAGGAA----- 223
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACATTGTTTGAAGTTATTGTGAGTGCCTCGAGGACCAAGGAACCGTTGAAATTTCCAATTTCAGGAAGTTCC 518
Query 224 -------------------------------------------------------------------------- 223
Sbjct 519 AGTGGATGCCCATCAGGAAGATTCTCATGCTGAACAGAAGGGCAAGAGAGGTGGATCTGTGAGGGAAAAGACCC 592
Query 224 ---------------------GGAAACCTCGACCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTT 276
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AATAGGATAACTCAAGTTACTGGAAACCTCGACCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTT 666
Query 277 GTGCCTCCTACACAGTCAAAGAAAGAGAAAAAAGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTGCCTCCTACACAGTCAAAGAAAGAGAAAAAAGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAG 740
Query 351 CAAAAAGAATAGCCATAAGAAAACCAGGCCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAG 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CAAAAAGAATAGCCATAAGAAAACCAGGCCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAG 814
Query 425 TTACTGTTGGAGATCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCT 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTACTGTTGGAGATCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCT 888
Query 499 GCCTCTGCAGATCAACACAGTCAAAGCGGCTCTAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTC 572
||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCTTCTGCAGATCAACACAGTCAAAGCGGCTCTAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTC 962
Query 573 ACCCAGAGGAGAAGCCTCATCATTGAATGGAGAATCTCAT---------------------------------- 612
||||||||||||||||||||||||||||||||||||||||
Sbjct 963 ACCCAGAGGAGAAGCCTCATCATTGAATGGAGAATCTCATTAAAGTTTATTTTCTCCAATTTCTTAGTCACTTC 1036
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1037 TGTCCTACCATGCAAATACACAGATTATGCCAAGAGGTACCACATTTTCATGACAGATACATTCATGCACAATC 1110
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1111 CATAATTTGAGTTTTACATAAAATAGAAATTTGTTAGAATTTGTTAGATTTTATTGCAATGATGCCTACCAAAC 1184
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1185 ATTTCCAGACTTAACATTTTGGTCTCTGCAGTTAAGTGCCATGAAAATGTGGTTGAATTATTCATTATGCAGTG 1258
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1259 TTATTGGTAAGTGTATTTTCACTTTTAGTTTAGTGAATTCTAACACATAATTCTTGAATTCTCTACTATTGGCA 1332
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1333 TGTAACGAATTTAAATTTTTTATAACATAGTGCAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAGA 1406
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1407 TAGTTATATGTATACAAGTCAAAGAACAACTTAACTATTGCTGCAACAGGTTTTTCTTAATGGTTATCCTCTTA 1480
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1481 AATACACCTGCTGGTACTTGGTGTGGTTAAATAGGAAAATTGTTATTAAATAAAGAATTTGTATGAACCTTTGC 1554
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1555 CAATGTTTTTGACACGTTTTACTAATTATTGTTCCTGAATTATGTTTCTGGTTTTATCTATTTTTTGAGGTTTT 1628
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1629 TTTGTTTGCTTATTTTTCAAAACATTCATTTATTGTAATGTTTACTAGCGGACTAGTAAACAATAAAACATTGA 1702
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1703 TTATTTAGCTTTATAATTCAGGTTTAGTGCTATTGTCATTGAACACTGGTATTTTCTGTATCATATAAAACATT 1776
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1777 AAAATTCAAATAATTATAAGCATTTGGCAAAAACAAGAGAAAAGAAACTTGCCATATTTTACAAGCTGCAATTT 1850
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1851 TAGAAAAGCTTTAACTTAATGATAGTTTTATCATTGTTTTCTTGTCCCAAACTTATCCAGGGCCATAGAAGTAT 1924
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1925 GAATCTAATTAAAACAGAAATGGGAATTATTGCACAGAAATGGGAAATAACTAATTTTAAATCAGTCAAATTGG 1998
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1999 CTTCTTATTAAATACAATAATTCTTATGAAAATCATAGTACCCTATTTTCAGACACAGCTGCCAGTTTACACAT 2072
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2073 TTCTCAGTATCCTGAAAGGAAAAAAGTATAGCCCCACTTATACTATGTAAAATTACCAATAAAATATTTTTATG 2146
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2147 ACTACAGATTTTGCATTTTTGTTTACAACTATTTAAAGAGTTTTATGTTGTATTTAGAATTTCAACCTAGAAAC 2220
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2221 CACACAGTACTTAAATTCTCCTGGGGTCTCCTGCTTTCTCTTAACCATTTGCTTAATATATATCTACCTAAAGG 2294
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2295 AGACTTCTGAATTGTAAATGAACTTAAAAATAGAATGTGGATGCAAAATATCACATAAGACATCATGATAACAT 2368
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2369 TTGAAGAAAAAATAAAACTGTAGACCCTAACAGTTGTGATATTTGGTGGTTTCATGTGGTAATGTAATTTTCTG 2442
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2443 TTTAATTACAGTACTTTTTACAGGCACAGTGGTACTGTCTTTTTTGTAAGATGCTAGTTGTGAAATACAATTAA 2516
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2517 TTGCATACAGTAAAAGTCTGTGATTAAAACATTTATATACCTCATTCTTTAGTGTTGTTAAATGAAAAATTAAA 2590
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2591 ATTTGTGTTTATTATAAGATACTTTCAATGGAATACCAGCTAACCAGATATGTTCCTTTAAAACATGAATTTTT 2664
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2665 TTGTCTTATTCTGTTTTTAACATGTTTCAAATGTTTTATACATTTTTGGAGATAGTAAAAATTTAAAAATGTAA 2738
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2739 TAGGGAAAATATTTAATTTTTAAGTCAAAAACTATGCTTTAAAGGAATTACATCTTATGATCAAATAACTTTCA 2812
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2813 GGATGTATTTTAAATGAGCTGCAAGAGAGAAAAATCTGACAGGAGATGGGATTTTACCTGAATGGAGCATACTC 2886
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2887 ATATTTCTACATAGGTGGGAAGATACTCATCTTTCTACATAGACGGGAACACGGTGTAGCATGGAGATTAAGCG 2960
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2961 TGCTAACTGACACCTCATGTTTGAATCCTGTTGTAGAATGGAAATGAGCTTAAATTACCCAAGCTTACTTTCCA 3034
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3035 TCTATAAAACAGGGCTAATAATGGTAATCACATCTAATTTATAGGGTTTTTGGGAGGATTAAGTCAATCCGTGT 3108
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3109 AAAATTCTTAATTATCTGACACATACTGGTCACTCAGTAAATGTGAGCTTTTACCATTGTTATAGGTAAAATCC 3182
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3183 CATTACAAAAATACAAAAATATTTTTTGTAACAGTTATTTTCCTGCCCTCTTGGATGACCTAAAGTAATAGTGT 3256
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3257 TTTATAGATTTCACTAAATTTTCAGTGTAATATCAGATGTTTTCTCTGGATGCAGAAAGACCATCTTTCCATAA 3330
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3331 TTAAAGAACCTGGTGGGTGTGCACTATGAGATTGGAGAAATGAATTAAGTTGACTTGAAATTATTTTACTTTTA 3404
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3405 TTAATCACAGGTATCTCAACCTGCCTTTGTTTCACCCTACTTCAAGTACACTTCCACACCAGGAAAACAGACCC 3478
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3479 AAATTCCATAAACAGAACTGACGTTAAAATATGCGAAAGATTCAGAACCTAGGTTTAGGGTACATGTTTTTCTC 3552
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3553 TGTTTCATGAACTTACAGTGTGGTTTGAGCACTGGGTTCTTTTAGCCAAATTCCATACAAAAAGAATTTGGATG 3626
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3627 TTTTCCAGCATTTATTACCTTACTTTGCTATAAGTAAGAGTGAAGATAGGCCGGGTGTGATGGCTCATGCCAGT 3700
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3701 AATCCCAGCACTTTGGGCTGAAGCAGGCAGATATTTTGAGCCCAGGACCAGCCTGGGCAACATGGTGAAAGCTC 3774
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3775 ATCTCTATGAAAAAATTTGAATATACATATATATATATATGTATATTTAAAAAGTGAATATAATTTGAGGCACA 3848
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3849 GAAGAATATTCTTAAAACCTTTTGTATTATACAATAGAAATAAAGGTTTTATTTTTATTAAATGCTTTCCTAAA 3922
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3923 ATGATAGTGGATAATAGACAAAGTGAAAACATTTAAAAAGGAAGAGAAACTTCAGCCTTTCTAAGTTGATAGCA 3996
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3997 TGTTTATTAACTTTTAGATAAAGATCCTTATAGACTGAAAGAATGTAGCCTCTGCATTAATGGTAAATGGTCTA 4070
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4071 GAAGTTTTCGTTTCCACTGAGGCTTCCGCCACTCGCTTTTTTAAACTTCCTGCTATGGTTTGGATATGGTTTGT 4144
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4145 CCTCACCAAAACTCATGCTGAGGCCTGAGTCCCCAGTTTGATTGTGTTGGTAGGTGGTGCCTTTAAGAGGTGAT 4218
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4219 TAGGTCATTGAGATGGATTAAAGGCTTTCTCATGAGGCTCAGTTAGTTCTGGAATGGATTCGCTCTTGCAGGAA 4292
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4293 TGGATGAATTCTCACAAGAGTGGGTTGTTATGAAGTGAGGATGCTTCTTGTGTTCTGTTCTCTTTGCCCTCCTC 4366
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4367 AGTTCACCATCTGCTTTCCACCATGAGTTGAAGCAGCATGAGGCCCTCATCAGATGGGCTCCCTGATCTTGGAC 4440
Query 613 -------------------------------------------------- 612
Sbjct 4441 TCCTCAGCCTTTGGACTCATAAGCCAAAATAAATCTGTTTTCTTTATAAA 4490
