Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07561
- Subject:
- XR_245886.4
- Aligned Length:
- 2550
- Identities:
- 598
- Gaps:
- 1938
Alignment
Query 1 --------------------------------------------------------------------ATGGGA 6
||||||
Sbjct 1 ATTATCCTCCTTATTGACAAACAGAGCGGTCGCGGCGGCGACTCTCGGCGTGCGGTGATAGCCAAGCCATGGGA 74
Query 7 GACAAGAAGAGCCCCACCAGGCCGAAGCGGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GACAAGAAGAGCCCCACCAGGCCGAAGCGGCAGCCGAAGCCGTCCTCGGATGAGGGTTACTGGGACTGTAGCGT 148
Query 81 CTGCACCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCG-- 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CTGCACCTTCCGGAACAGCGCCGAGGCCTTCAAGTGCATGATGTGCGATGTGCGGAAGGGCACCTCCACCCGGG 222
Query 153 -------------------------------ATCCACA-------TT---GTTTGA-----------------A 168
.|||||| || |||.|| |
Sbjct 223 ACAGCAAGGAAGGGGGGAAGCTGGTGTCCTACTCCACAGCCAGTCTTGGGGTTAGAGGAACCCTGAGAAATAGA 296
Query 169 GT---------------------------------------------------------------TATTGT--- 176
|| |||.||
Sbjct 297 GTAGGTGGTGGCAGCTCAGAAGAGAAGAAACAGGCTGAATACCTGGCACCTGGAAGAAGAAGGAATATAGTACA 370
Query 177 -----GAGT------------------------------------GCCTCGAGGACCA---AGGAACCGTTGAA 206
|||| |.||.||||.||| .||..||..|||.
Sbjct 371 CAGGGGAGTTGGCCCAGGACAGAGAAGTGGGCCTAGTTTAAAAGAGGCTTGAGGCCCACATGGGGGCCCCTGAC 444
Query 207 ATT-----------------------------------TCCAATT----------------------------- 216
||| |||||||
Sbjct 445 ATTTTTTTTTTTTACCAGTACATCTAAGCTCTTGTAGATCCAATTTTTAGTGGTGGAAACATTACTTGAGGAGG 518
Query 217 --TCAG-------------------------------------------------------------------- 220
||||
Sbjct 519 ACTCAGAGAAGCATTGTCATTTGGATTGAAACTGAAGAGGCTCTGGGCAACTCACCAGAAATCTAAGGGACACT 592
Query 221 --------GAAGGAAACCTCGACCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCTCCTA 286
|||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGTTCCTGAAAGAAACCTCGACCTGTCTCCCAGTTGGTTGCACAGCAGGTTACTCAGCAGTTTGTGCCTCCTA 666
Query 287 CACAGTCAAAGAAAGAGAAAAAAGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CACAGTCAAAGAAAGAGAAAAAAGATAAAGTAGAAAAAGAAAAAAGTGAAAAGGAAACAACTAGCAAAAAGAAT 740
Query 361 AGCCATAAGAAAACCAGGCCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAGTTACTGTTGG 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGCCATAAGAAAACCAGGCCAAGATTGAAAAATGTGGATCGGAGTAGTGCTCAGCATTTGGAAGTTACTGTTGG 814
Query 435 AGATCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCTGCCTCTGCAG 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 815 AGATCTGACAGTCATTATTACAGACTTTAAGGAGAAAACAAAGTCACCGCCTGCATCTAGTGCTGCTTCTGCAG 888
Query 509 ATCAACACAGTCAAAGCGGCTCTAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTCACCCAGAGGA 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ATCAACACAGTCAAAGCGGCTCTAGCTCTGATAACACAGAGAGAGGAATGTCCAGGTCATCTTCACCCAGAGGA 962
Query 583 GAAGCCTCATCATTGAATGGAGAATCTCAT-------------------------------------------- 612
||||||||||||||||||||||||||||||
Sbjct 963 GAAGCCTCATCATTGAATGGAGAATCTCATTAAAGTTTATTTTCTCCAATTTCTTAGTCACTTCTGTCCTACCA 1036
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1037 TGCAAATACACAGATTATGCCAAGAGGTACCACATTTTCATGACAGATACATTCATGCACAATCCATAATTTGA 1110
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1111 GTTTTACATAAAATAGAAATTTGTTAGAATTTGTTAGATTTTATTGCAATGATGCCTACCAAACATTTCCAGAC 1184
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1185 TTAACATTTTGGTCTCTGCAGTTAAGTGCCATGAAAATGTGGTTGAATTATTCATTATGCAGTGTTATTGGTAA 1258
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1259 GTGTATTTTCACTTTTAGTTTAGTGAATTCTAACACATAATTCTTGAATTCTCTACTATTGGCATGTAACGAAT 1332
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1333 TTAAATTTTTTATAACATAGTGCAAGCTGCCTAAATATGTATTATTTGAGAATTGTGAAACAGATAGTTATATG 1406
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1407 TATACAAGTCAAAGAACAACTTAACTATTGCTGCAACAGGTTTTTCTTAATGGTTATCCTCTTAAATACACCTG 1480
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1481 CTGGTACTTGGTGTGGTTAAATAGGAAAATTGTTATTAAATAAAGAATTTGTATGAACCTTTGCCAATGTTTTT 1554
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1555 GACACGTTTTACTAATTATTGTTCCTGAATTATGTTTCTGGTTTTATCTATTTTTTGAGGTTTTTTTGTTTGCT 1628
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1629 TATTTTTCAAAACATTCATTTATTGTAATGTTTACTAGCGGACTAGTAAACAATAAAACATTGATTATTTAGCT 1702
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1703 TTATAATTCAGGTTTAGTGCTATTGTCATTGAACACTGGTATTTTCTGTATCATATAAAACATTAAAATTCAAA 1776
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1777 TAATTATAAGCATTTGGCAAAAACAAGAGAAAAGAAACTTGCCATATTTTACAAGCTGCAATTTTAGAAAAGCT 1850
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1851 TTAACTTAATGATAGTTTTATCATTGTTTTCTTGTCCCAAACTTATCCAGGGCCATAGAAGTATGAATCTAATT 1924
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1925 AAAACAGAAATGGGAATTATTGCACAGAAATGGGAAATAACTAATTTTAAATCAGTCAAATTGGCTTCTTATTA 1998
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1999 AATACAATAATTCTTATGAAAATCATAGTACCCTATTTTCAGACACAGCTGCCAGTTTACACATTTCTCAGTAT 2072
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2073 CCTGAAAGGAAAAAAGTATAGCCCCACTTATACTATGTAAAATTACCAATAAAATATTTTTATGACTACAGATT 2146
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2147 TTGCATTTTTGTTTACAACTATTTAAAGAGTTTTATGTTGTATTTAGAATTTCAACCTAGAAACCACACAGTAC 2220
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2221 TTAAATTCTCCTGGGGTCTCCTGCTTTCTCTTAACCATTTGCTTAATATATATCTACCTAAAGGAGACTTCTGA 2294
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2295 ATTGTAAATGAACTTAAAAATAGAATGTGGATGCAAAATATCACATAAGACATCATGATAACATTTGAAGAAAA 2368
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2369 AATAAAACTGTAGACCCTAACAGTTGTGATATTTGGTGGTTTCATGTGGTAATGTAATTTTCTGTTTAATTACA 2442
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2443 GTACTTTTTACAGGCACAGTGGTACTGTCTTTTTTGTAAGATGCTAGTTGTGAAATACAATTAATTGCATACAG 2516
Query 613 ---------------------------------- 612
Sbjct 2517 TAAAAGTCTGTGATTAAAACATTTATATACCTCA 2550
