Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_07648
- Subject:
- NM_001011516.2
- Aligned Length:
- 1803
- Identities:
- 610
- Gaps:
- 1176
Alignment
Query 1 ATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAACTACAGTGTGTCACTGGTTGGCCCAGCTCCTTGGGGTTTCCGGCTGCAGGGCGGTAAGGATTTCAA 74
Query 75 CATGCCTCTGACAATCTCTAGTCTAAAAGATGGCGGCAAGGCAGCCCAGGCAAATGTAAGAATAGGCGATGTGG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CATGCCTCTGACAATCTCTAGTCTAAAAGATGGCGGCAAGGCAGCCCAGGCAAATGTAAGAATAGGCGATGTGG 148
Query 149 TTCTCAGCATTGATGGAATAAATGCACAAGGAATGACTCATCTTGAAGCCCAGAATAAGATTAAGGGTTGTACA 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TTCTCAGCATTGATGGAATAAATGCACAAGGAATGACTCATCTTGAAGCCCAGAATAAGATTAAGGGTTGTACA 222
Query 223 GGCTCTTTGAATATGACTCTGCAAAGAGCATCTGCTGCACCCAAGCCTGAGCCGGTTCCTGTTCAAAAGGGAGA 296
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.|
Sbjct 223 GGCTCTTTGAATATGACTCTGCAAAGAGCATCTGCTGCACCCAAGCCTGAGCCGGTTCCTGTTCAAAA--GAAA 294
Query 297 ACCTAAAGAAGTAGTTAAACCTGTGCCCATTACATCTCCTGCTGTGTCCAAAGTCACTTCCACAAACAACATGG 370
|| |.|||| .|||||.||
Sbjct 295 AC----ACAAGT------------------------------------------------GACAAATAA----- 311
Query 371 CCTACAATAAGGCACCACGGCCTTTTGGTTCTGTGTCTTCACCAAAAGTCACATCCATCCCATCACCATCGTCT 444
Sbjct 312 -------------------------------------------------------------------------- 311
Query 445 GCCTTCACCCCAGCCCATGCGACCACCTCATCACATGCTTCCCCTTCACCCGTGGCTGCCGTCACTCCTCCCCT 518
||||
Sbjct 312 ----------------------------------------------------------------------CCCT 315
Query 519 GTTCGCTGCATCTGGACTGCATGCTAATGCCAATCTTAGTGCTGACCAGTCTCCATCTGCACTGAGCGCTGGTA 592
| ||||||.| |
Sbjct 316 G---------------------------------------------------------GCACTGTG-------A 325
Query 593 AAACTGCAGTTAATGTCCCACGGCAGCCCACAGTCACCAGCGTGTGTTCCGAGACTTCTCAGGAGCTAGCAGAG 666
||| ||||||
Sbjct 326 AAA------------TCCCAC----------------------------------------------------- 334
Query 667 GGACAGAGAAGAGGATCCCAGGGTGACAGTAAACAGCAAAATGGCCCACCAAGAAAACACATTGTGGAGCGCTA 740
.||||| |||||||||||||||||||||||||||||||
Sbjct 335 ----------------------------CTAAAC---------GCCCACCAAGAAAACACATTGTGGAGCGCTA 371
Query 741 TACAGAGTTTTATCATGTACCCACTCACAGTGATGCCAGCAAGAAGAGACTGATTGAGGATACTGAAGACTGGC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TACAGAGTTTTATCATGTACCCACTCACAGTGATGCCAGCAAGAAGAGACTGATTGAGGATACTGAAGACTGGC 445
Query 815 GTCCAAGGACTGGAACAACTCAGTCTCGCTCTTTCCGAATCCTTGCCCAGATCACTGGGACTGAACATTTGAAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 GTCCAAGGACTGGAACAACTCAGTCTCGCTCTTTCCGAATCCTTGCCCAGATCACTGGGACTGAACATTTGAAA 519
Query 889 GAATCTGAAGCCGATAATACAAAGAAGGCAAATAACTCTCAGGAGCCTTCTCCGCAGTTGGCTTCCTCGGTAGC 962
||||||||||||||||||||||||||||||||
Sbjct 520 GAATCTGAAGCCGATAATACAAAGAAGGCAAA------------------------------------------ 551
Query 963 TTCCACACGGAGCATGCCCGAGAGCCTGGACAGCCCAACCTCTGGCAGACCAGGGGTTACCAGCCTCACAACTG 1036
|||.| ||| ||||
Sbjct 552 ---------------------------GGAAA--------------AGA--------TACC------------- 563
Query 1037 CAGCTGCCTTCAAGCCTGTAGGATCCACTGGCGTCATCAAGT-CACCAA--------GCTGGCAACGGCCAAAC 1101
||||||.|.||.||| ||| |||.| |||.|| .||||| ||
Sbjct 564 ------CCTTCACGTCTTTAG--TCC-----------CAAATACACAAAATTACGTGACTGGC---------AC 609
Query 1102 CAAGGAGTACCTTC--CAC-TGGAAGAATCTCAA---ACAGCGCTGCTTACTCAGGATCAGTGGCACCAGCCAA 1169
||.|.||| ||| ||| || .|||.|| ||||
Sbjct 610 CATGAAGT---TTCAGCACGTG-----CTCTTAACGTACAG--------------------------------- 642
Query 1170 CTCAGCTTTGGGACAAACCCAGCCAAGTGACCAGGACACTTTAGTGCAAAGAGCTGAGCACATTCCAGCAGGGA 1243
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1244 AACGAACTCCGATGTGCGCCCATTGTAACCAGGTCATCAGAGGACCATTCTTAGTGGCACTGGGGAAATCTTGG 1317
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1318 CACCCAGAAGAATTCAACTGCGCTCACTGCAAAAATACAATGGCCTACATTGGATTTGTAGAGGAGAAAGGAGC 1391
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1392 CCTGTATTGTGAGCTGTGCTATGAGAAATTCTTTGCCCCTGAATGTGGTCGATGCCAAAGGAAGATCCTTGGAG 1465
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1466 AAGTCATCAATGCGTTGAAACAAACTTGGCATGTTTCCTGTTTTGTGTGTGTAGCCTGTGGAAAGCCCATTCGG 1539
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1540 AACAATGTTTTTCACTTGGAGGATGGTGAACCCTACTGTGAGACTGATTATTATGCCCTCTTTGGTACTATATG 1613
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1614 CCATGGATGTGAATTTCCCATAGAAGCTGGTGACATGTTCCTGGAAGCTCTGGGCTACACCTGGCATGACACTT 1687
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1688 GCTTTGTATGCTCAGTGTGTTGTGAAAGTTTGGAAGGTCAGACCTTTTTCTCCAAGAAGGACAAGCCCCTGTGT 1761
Sbjct 643 -------------------------------------------------------------------------- 642
Query 1762 AAGAAACATGCTCATTCTGTGAATTTT 1788
Sbjct 643 --------------------------- 642
